Wall clock time and date at job start Mon Mar 30 2020 03:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99889 * 2 1 4 4 C 1.46901 * 110.99847 * 123.95269 * 2 1 3 5 5 H 1.09000 * 109.46924 * 304.31821 * 4 2 1 6 6 C 1.52998 * 109.46878 * 184.31827 * 4 2 1 7 7 C 1.53000 * 109.46971 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47444 * 60.00068 * 7 6 4 9 9 C 1.53001 * 109.47474 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47299 * 59.99490 * 8 7 6 11 11 C 1.53003 * 109.46843 * 300.00242 * 8 7 6 12 12 C 1.52997 * 109.47039 * 64.31936 * 4 2 1 13 13 H 1.09004 * 109.47078 * 299.99769 * 12 4 2 14 14 C 1.50693 * 109.47240 * 59.99660 * 12 4 2 15 15 H 1.08000 * 120.00426 * 24.18236 * 14 12 4 16 16 C 1.37882 * 120.00297 * 204.17602 * 14 12 4 17 17 N 1.31515 * 119.99694 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00445 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47188 * 59.99836 * 18 16 14 20 20 H 1.48499 * 109.47368 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47118 * 300.00247 * 18 16 14 22 22 H 1.08992 * 109.47246 * 296.04919 * 1 2 3 23 23 H 1.09004 * 109.46717 * 56.04986 * 1 2 3 24 24 H 1.09000 * 109.46920 * 176.04031 * 1 2 3 25 25 H 1.08999 * 109.47048 * 180.28744 * 3 2 1 26 26 H 1.09002 * 109.47304 * 300.29151 * 3 2 1 27 27 H 1.09002 * 109.46979 * 60.29286 * 3 2 1 28 28 H 1.08996 * 109.47442 * 60.00035 * 6 4 2 29 29 H 1.09000 * 109.47339 * 299.99740 * 6 4 2 30 30 H 1.09003 * 109.47281 * 299.99870 * 7 6 4 31 31 H 1.09001 * 109.47230 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46979 * 180.02562 * 9 8 7 33 33 H 1.08996 * 109.46435 * 299.99126 * 9 8 7 34 34 H 1.08992 * 109.47184 * 59.99382 * 9 8 7 35 35 H 1.08998 * 109.47308 * 324.34972 * 10 8 7 36 36 H 1.09000 * 109.46615 * 84.34304 * 10 8 7 37 37 H 1.09006 * 109.47378 * 204.34343 * 10 8 7 38 38 H 1.09003 * 109.46823 * 299.99549 * 11 8 7 39 39 H 1.08996 * 109.47304 * 179.97438 * 11 8 7 40 40 H 0.96997 * 120.00509 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 1.5847 -0.3673 2.0652 6 6 3.5210 -0.6539 1.1656 7 6 4.0694 -1.4522 2.3501 8 6 3.6686 -2.9215 2.2042 9 6 4.2164 -3.7197 3.3890 10 6 4.2449 -3.4805 0.9018 11 6 2.1429 -3.0335 2.1761 12 6 1.5946 -2.2353 0.9923 13 1 0.5076 -2.3152 0.9723 14 6 2.1623 -2.7864 -0.2902 15 1 3.0346 -2.3303 -0.7346 16 6 1.5683 -3.8731 -0.8963 17 7 0.5059 -4.4284 -0.3554 18 14 2.2725 -4.5568 -2.4857 19 1 3.6735 -4.9939 -2.2587 20 1 1.4575 -5.7159 -2.9300 21 1 2.2461 -3.5035 -3.5321 22 1 -0.3633 0.4513 0.9232 23 1 -0.3633 0.5740 -0.8525 24 1 -0.3633 -1.0252 -0.0710 25 1 3.0850 1.3424 -0.0052 26 1 1.6417 1.8964 -0.8874 27 1 1.6502 1.8931 0.8926 28 1 3.8066 0.3929 1.2691 29 1 3.9318 -1.0525 0.2380 30 1 3.6587 -1.0539 3.2780 31 1 5.1563 -1.3727 2.3698 32 1 3.9312 -4.7666 3.2848 33 1 5.3032 -3.6399 3.4093 34 1 3.8054 -3.3213 4.3166 35 1 4.2278 -2.7061 0.1350 36 1 5.2724 -3.8040 1.0686 37 1 3.6453 -4.3298 0.5741 38 1 1.7323 -2.6353 3.1040 39 1 1.8573 -4.0802 2.0718 40 1 0.0878 -5.1927 -0.7818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259820023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:29 Heat of formation + Delta-G solvation = 2.316216 kcal Electronic energy + Delta-G solvation = -17551.937395 eV Core-core repulsion = 15173.613200 eV Total energy + Delta-G solvation = -2378.324195 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.22920 -35.95256 -32.70053 -30.90979 -29.63885 -26.91072 -26.72271 -25.51316 -24.33768 -22.16494 -21.01911 -19.04554 -17.73527 -15.82700 -15.31042 -14.65262 -14.05346 -13.83358 -13.81445 -13.19779 -12.98548 -12.33023 -12.20965 -11.92488 -11.80650 -11.66789 -11.37300 -10.98482 -10.85917 -10.69821 -10.63108 -10.48742 -10.41379 -10.16516 -9.87933 -9.53886 -9.32201 -9.17020 -8.70490 -8.46782 -8.03384 -7.35191 -5.81313 -3.70088 3.43118 3.47605 3.51559 4.60503 4.78997 5.49079 5.55896 5.63156 5.75666 5.83400 5.88428 5.95581 6.04305 6.17514 6.20051 6.28762 6.31975 6.39779 6.45541 6.53035 6.57782 6.62327 6.68538 6.70607 6.82636 6.92433 7.06435 7.16075 7.19753 7.30553 7.50807 7.67396 7.78105 7.87864 8.00680 8.13641 8.20614 8.65471 9.21737 9.80795 11.29788 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.018820 B = 0.015502 C = 0.010545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.390872 B = 1805.827761 C = 2654.696097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.519 5.519 3 C 0.021 3.979 4 C 0.098 3.902 5 H 0.007 0.993 6 C -0.111 4.111 7 C -0.099 4.099 8 C -0.053 4.053 9 C -0.138 4.138 10 C -0.127 4.127 11 C -0.089 4.089 12 C 0.046 3.954 13 H 0.047 0.953 14 C -0.457 4.457 15 H 0.064 0.936 16 C 0.054 3.946 17 N -0.904 5.904 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.279 1.279 22 H 0.006 0.994 23 H 0.051 0.949 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.008 0.992 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.006 0.994 37 H 0.067 0.933 38 H 0.017 0.983 39 H 0.063 0.937 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.165 6.133 3.970 8.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.242 5.242 3 C -0.128 4.128 4 C -0.010 4.010 5 H 0.025 0.975 6 C -0.149 4.149 7 C -0.137 4.137 8 C -0.053 4.053 9 C -0.195 4.195 10 C -0.183 4.183 11 C -0.127 4.127 12 C 0.027 3.973 13 H 0.065 0.935 14 C -0.496 4.496 15 H 0.082 0.918 16 C -0.145 4.145 17 N -0.544 5.544 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.205 1.205 22 H 0.024 0.976 23 H 0.070 0.930 24 H 0.103 0.897 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.027 0.973 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.025 0.975 37 H 0.086 0.914 38 H 0.035 0.965 39 H 0.081 0.919 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.191 5.755 3.496 7.931 hybrid contribution -0.017 -0.020 -0.107 0.111 sum 4.174 5.735 3.388 7.861 Atomic orbital electron populations 1.22316 0.88149 1.03180 0.97967 1.61881 1.07119 1.10754 1.44471 1.22446 1.00800 0.90614 0.98917 1.21766 0.93682 0.97362 0.88201 0.97473 1.21704 0.95969 0.97439 0.99772 1.21504 0.98739 0.96033 0.97443 1.20381 0.97019 0.93130 0.94800 1.21906 0.99365 1.00187 0.98062 1.22339 0.95847 1.03012 0.97129 1.21598 0.92491 1.01727 0.96926 1.18827 0.97599 0.87015 0.93822 0.93482 1.21014 1.11771 1.11186 1.05585 0.91822 1.24829 0.95301 0.97706 0.96627 1.69914 1.21172 1.23569 1.39791 0.86920 0.79032 0.78445 0.85195 1.20395 1.21921 1.20520 0.97553 0.92997 0.89687 0.91511 0.92644 0.97311 0.94229 0.89876 0.93691 0.93392 0.93187 0.93986 0.93978 0.90159 0.97498 0.91406 0.96454 0.91859 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.30 60.07 0.56 1.17 16 2 N -0.52 -10.38 4.46 -243.18 -1.09 -11.46 16 3 C 0.02 0.34 9.10 60.06 0.55 0.89 16 4 C 0.10 2.00 1.64 -67.71 -0.11 1.89 16 5 H 0.01 0.15 8.13 -51.93 -0.42 -0.27 16 6 C -0.11 -2.07 4.35 -26.73 -0.12 -2.19 16 7 C -0.10 -1.75 4.73 -26.73 -0.13 -1.87 16 8 C -0.05 -1.03 0.77 -154.51 -0.12 -1.15 16 9 C -0.14 -2.33 8.35 37.16 0.31 -2.02 16 10 C -0.13 -2.63 7.14 37.16 0.27 -2.37 16 11 C -0.09 -1.96 4.35 -26.76 -0.12 -2.08 16 12 C 0.05 1.08 1.80 -91.80 -0.17 0.92 16 13 H 0.05 1.25 6.00 -51.93 -0.31 0.94 16 14 C -0.46 -11.49 4.32 -34.44 -0.15 -11.64 16 15 H 0.06 1.62 4.65 -52.49 -0.24 1.38 16 16 C 0.05 1.44 4.88 -17.82 -0.09 1.35 16 17 N -0.90 -25.50 12.97 55.43 0.72 -24.78 16 18 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.08 1.86 6.42 -51.93 -0.33 1.53 16 25 H 0.07 1.05 5.97 -51.93 -0.31 0.74 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.04 0.66 6.24 -51.93 -0.32 0.34 16 29 H 0.08 1.68 4.89 -51.93 -0.25 1.43 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.74 3.38 -51.93 -0.18 1.56 16 36 H 0.01 0.12 7.90 -51.93 -0.41 -0.29 16 37 H 0.07 1.59 6.47 -51.93 -0.34 1.25 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 1.56 8.12 -51.93 -0.42 1.14 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 286.88 15.07 4.32 4.32 Total: -1.00 -26.77 286.88 -7.28 -34.04 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -6.90 Total: -1.29 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 0.69 Total: -17.09 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: -0.37 Total: -36.25 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.77 -7.28 -34.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259820023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.360 kcal (2) G-P(sol) polarization free energy of solvation -26.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds