Wall clock time and date at job start Mon Mar 30 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 C 1.52999 * 109.47220 * 119.99520 * 2 1 3 5 5 C 1.53008 * 109.46738 * 64.65235 * 4 2 1 6 6 C 1.50697 * 109.53339 * 291.29771 * 5 4 2 7 7 H 1.08008 * 119.99883 * 114.59745 * 6 5 4 8 8 C 1.37878 * 120.00548 * 294.60067 * 6 5 4 9 9 N 1.31512 * 120.00094 * 200.08759 * 8 6 5 10 10 Si 1.86800 * 119.99595 * 20.09056 * 8 6 5 11 11 H 1.48499 * 109.47063 * 90.28620 * 10 8 6 12 12 H 1.48502 * 109.46712 * 210.28099 * 10 8 6 13 13 H 1.48496 * 109.47319 * 330.28266 * 10 8 6 14 14 C 1.53203 * 109.49117 * 171.22274 * 5 4 2 15 15 C 1.53119 * 109.11309 * 182.42269 * 14 5 4 16 16 C 1.53038 * 109.31347 * 57.63692 * 15 14 5 17 17 N 1.46845 * 109.51960 * 300.79881 * 16 15 14 18 18 C 1.46904 * 110.99800 * 185.83999 * 17 16 15 19 19 C 1.46844 * 111.20028 * 61.74364 * 17 16 15 20 20 H 1.09004 * 109.47242 * 289.57419 * 1 2 3 21 21 H 1.08999 * 109.47167 * 49.57136 * 1 2 3 22 22 H 1.08992 * 109.46811 * 169.57162 * 1 2 3 23 23 H 1.08994 * 109.47577 * 240.00207 * 2 1 3 24 24 H 1.09003 * 109.47650 * 184.87647 * 3 2 1 25 25 H 1.08998 * 109.47334 * 304.87838 * 3 2 1 26 26 H 1.09007 * 109.47264 * 64.87833 * 3 2 1 27 27 H 1.08997 * 109.47312 * 304.65650 * 4 2 1 28 28 H 1.08998 * 109.47266 * 184.65050 * 4 2 1 29 29 H 0.97000 * 119.99984 * 179.97438 * 9 8 6 30 30 H 1.08996 * 109.57797 * 62.51127 * 14 5 4 31 31 H 1.08998 * 109.51419 * 302.29410 * 14 5 4 32 32 H 1.09001 * 109.50577 * 297.67403 * 15 14 5 33 33 H 1.09004 * 109.50345 * 177.59442 * 15 14 5 34 34 H 1.09000 * 109.46185 * 60.81166 * 16 15 14 35 35 H 1.08994 * 109.46293 * 180.79741 * 16 15 14 36 36 H 1.08992 * 109.47086 * 63.95333 * 18 17 16 37 37 H 1.08997 * 109.47104 * 183.95575 * 18 17 16 38 38 H 1.09002 * 109.47076 * 303.95311 * 18 17 16 39 39 H 1.09003 * 109.46473 * 58.26893 * 19 17 16 40 40 H 1.08998 * 109.46554 * 178.24099 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6278 -2.1935 1.1922 6 6 0.1330 -2.3046 1.3483 7 1 -0.4694 -2.6732 0.5311 8 6 -0.4657 -1.9357 2.5342 9 7 -1.6670 -2.3812 2.8308 10 14 0.4296 -0.8031 3.7196 11 1 0.0927 0.6086 3.4052 12 1 0.0128 -1.1134 5.1108 13 1 1.8947 -1.0042 3.5853 14 6 2.3184 -2.9620 2.3234 15 6 1.9479 -4.4442 2.2217 16 6 2.3576 -4.9751 0.8461 17 7 1.6700 -4.2081 -0.2005 18 6 1.9314 -4.7786 -1.5288 19 6 2.0467 -2.7896 -0.1536 20 1 -0.3634 0.3443 0.9683 21 1 -0.3633 0.6664 -0.7823 22 1 -0.3633 -1.0106 -0.1860 23 1 1.8934 -0.5138 -0.8899 24 1 3.1265 1.4438 -0.0874 25 1 1.6071 1.9810 -0.8430 26 1 1.7498 1.9305 0.9305 27 1 1.6102 -0.2577 2.1373 28 1 3.1268 -0.6495 1.2919 29 1 -2.0880 -2.1220 3.6653 30 1 1.9894 -2.5694 3.2855 31 1 3.3988 -2.8495 2.2333 32 1 0.8718 -4.5600 2.3507 33 1 2.4698 -5.0039 2.9979 34 1 3.4357 -4.8716 0.7232 35 1 2.0821 -6.0266 0.7658 36 1 1.5125 -5.7834 -1.5816 37 1 1.4687 -4.1516 -2.2910 38 1 3.0070 -4.8239 -1.6995 39 1 3.1263 -2.6964 -0.2718 40 1 1.5456 -2.2539 -0.9598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:44 Heat of formation + Delta-G solvation = 11.583515 kcal Electronic energy + Delta-G solvation = -17587.499758 eV Core-core repulsion = 15209.577424 eV Total energy + Delta-G solvation = -2377.922335 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.00023 -35.83730 -33.15244 -31.65188 -30.32074 -26.51956 -26.32537 -25.39528 -24.60569 -22.25075 -20.78302 -19.09550 -18.56969 -15.78799 -15.31519 -15.16328 -14.06433 -13.91379 -13.79436 -13.53530 -12.87158 -12.74301 -12.43564 -12.07099 -11.96749 -11.83136 -11.60934 -11.38611 -11.11618 -10.78938 -10.63087 -10.34867 -10.09205 -10.02844 -9.85998 -9.59913 -9.50874 -9.16847 -8.78165 -8.33511 -8.13467 -7.43586 -5.94803 -3.74625 3.34899 3.43210 3.49470 4.54423 4.68772 5.33811 5.52129 5.64171 5.70356 5.74596 5.82959 5.85809 5.93707 6.10101 6.13720 6.21295 6.25638 6.33333 6.35513 6.43051 6.44672 6.51686 6.55609 6.65731 6.74660 6.85657 6.91668 6.96568 7.00663 7.24140 7.29310 7.40591 7.48879 7.73165 7.89733 7.92932 8.04666 8.73073 9.17684 9.73537 11.18251 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021666 B = 0.015243 C = 0.011491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.026782 B = 1836.415204 C = 2436.039074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.110 4.110 5 C 0.046 3.954 6 C -0.463 4.463 7 H 0.082 0.918 8 C 0.074 3.926 9 N -0.891 5.891 10 Si 0.849 3.151 11 H -0.287 1.287 12 H -0.307 1.307 13 H -0.246 1.246 14 C -0.115 4.115 15 C -0.107 4.107 16 C 0.068 3.932 17 N -0.521 5.521 18 C 0.028 3.972 19 C 0.083 3.917 20 H 0.047 0.953 21 H 0.017 0.983 22 H 0.098 0.902 23 H 0.060 0.940 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.258 0.742 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.091 0.909 33 H 0.040 0.960 34 H 0.013 0.987 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.010 0.990 39 H 0.003 0.997 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.117 0.102 -4.869 9.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.104 4.104 3 C -0.205 4.205 4 C -0.147 4.147 5 C 0.045 3.955 6 C -0.500 4.500 7 H 0.100 0.900 8 C -0.126 4.126 9 N -0.530 5.530 10 Si 0.682 3.318 11 H -0.215 1.215 12 H -0.235 1.235 13 H -0.172 1.172 14 C -0.153 4.153 15 C -0.145 4.145 16 C -0.060 4.060 17 N -0.245 5.245 18 C -0.121 4.121 19 C -0.044 4.044 20 H 0.066 0.934 21 H 0.036 0.964 22 H 0.116 0.884 23 H 0.079 0.921 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.021 0.979 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.457 0.057 -4.659 8.792 hybrid contribution 1.344 0.866 0.710 1.749 sum 8.801 0.923 -3.949 9.690 Atomic orbital electron populations 1.22132 0.94030 1.03855 0.99601 1.21015 0.97437 0.93746 0.98199 1.21926 0.99736 0.97987 1.00866 1.22143 0.97179 0.98497 0.96931 1.18584 0.97306 0.89399 0.90228 1.20526 0.88587 1.40979 0.99955 0.90019 1.24834 0.94610 0.96317 0.96846 1.70026 1.16114 1.42914 1.23911 0.87896 0.81495 0.82338 0.80116 1.21454 1.23542 1.17161 1.22092 0.96665 0.95840 1.00665 1.21473 1.03700 0.95649 0.93661 1.21957 0.94066 0.96818 0.93136 1.61759 1.58021 1.02813 1.01910 1.22326 0.97622 1.00145 0.92018 1.22108 0.94879 0.87400 1.00008 0.93410 0.96398 0.88371 0.92146 0.93848 0.93509 0.93458 0.93063 0.95000 0.93198 0.92223 0.95648 0.89004 0.94099 0.96857 0.92220 0.92210 0.91990 0.97135 0.97853 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 7.84 37.16 0.29 -2.59 16 2 C -0.09 -1.61 2.48 -90.62 -0.23 -1.84 16 3 C -0.15 -2.42 9.18 37.16 0.34 -2.08 16 4 C -0.11 -2.29 3.24 -26.73 -0.09 -2.38 16 5 C 0.05 1.01 0.28 -155.53 -0.04 0.96 16 6 C -0.46 -11.74 3.73 -34.44 -0.13 -11.87 16 7 H 0.08 2.33 7.20 -52.48 -0.38 1.95 16 8 C 0.07 2.01 4.85 -17.82 -0.09 1.93 16 9 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 10 Si 0.85 21.05 22.12 -169.99 -3.76 17.29 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 13 H -0.25 -5.68 4.43 56.52 0.25 -5.43 16 14 C -0.11 -2.47 4.19 -26.56 -0.11 -2.59 16 15 C -0.11 -2.18 5.83 -26.65 -0.16 -2.33 16 16 C 0.07 1.25 5.46 -3.83 -0.02 1.23 16 17 N -0.52 -10.13 4.52 -242.97 -1.10 -11.23 16 18 C 0.03 0.43 9.62 60.07 0.58 1.01 16 19 C 0.08 1.65 3.50 -3.84 -0.01 1.64 16 20 H 0.05 1.09 6.71 -51.93 -0.35 0.74 16 21 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 22 H 0.10 2.24 5.12 -51.93 -0.27 1.97 16 23 H 0.06 1.08 6.05 -51.93 -0.31 0.77 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 26 H 0.05 0.80 8.14 -51.92 -0.42 0.37 16 27 H 0.05 1.16 2.62 -51.93 -0.14 1.02 16 28 H 0.03 0.62 8.13 -51.93 -0.42 0.19 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.06 1.37 3.92 -51.93 -0.20 1.16 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 2.17 7.35 -51.93 -0.38 1.79 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 38 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 39 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.07 1.37 6.17 -51.93 -0.32 1.05 16 LS Contribution 278.50 15.07 4.20 4.20 Total: -1.00 -27.65 278.50 -6.67 -34.31 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.12 Total: -0.21 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 0.34 Total: -18.90 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.32 Total: -36.69 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -3.76 Total: 17.29 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.65 -6.67 -34.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.898 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds