Wall clock time and date at job start Mon Mar 30 2020 03:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47117 * 2 1 4 4 C 1.52999 * 109.47220 * 119.99520 * 2 1 3 5 5 C 1.53008 * 109.46738 * 64.65235 * 4 2 1 6 6 C 1.50697 * 109.53339 * 291.29771 * 5 4 2 7 7 H 1.08008 * 119.99883 * 114.59745 * 6 5 4 8 8 C 1.37878 * 120.00548 * 294.60067 * 6 5 4 9 9 N 1.31512 * 120.00094 * 200.08759 * 8 6 5 10 10 Si 1.86800 * 119.99595 * 20.09056 * 8 6 5 11 11 H 1.48499 * 109.47063 * 90.28620 * 10 8 6 12 12 H 1.48502 * 109.46712 * 210.28099 * 10 8 6 13 13 H 1.48496 * 109.47319 * 330.28266 * 10 8 6 14 14 C 1.53203 * 109.49117 * 171.22274 * 5 4 2 15 15 C 1.53119 * 109.11309 * 182.42269 * 14 5 4 16 16 C 1.53038 * 109.31347 * 57.63692 * 15 14 5 17 17 N 1.46845 * 109.51960 * 300.79881 * 16 15 14 18 18 C 1.46904 * 110.99800 * 185.83999 * 17 16 15 19 19 C 1.46844 * 111.20028 * 61.74364 * 17 16 15 20 20 H 1.09004 * 109.47242 * 289.57419 * 1 2 3 21 21 H 1.08999 * 109.47167 * 49.57136 * 1 2 3 22 22 H 1.08992 * 109.46811 * 169.57162 * 1 2 3 23 23 H 1.08994 * 109.47577 * 240.00207 * 2 1 3 24 24 H 1.09003 * 109.47650 * 184.87647 * 3 2 1 25 25 H 1.08998 * 109.47334 * 304.87838 * 3 2 1 26 26 H 1.09007 * 109.47264 * 64.87833 * 3 2 1 27 27 H 1.08997 * 109.47312 * 304.65650 * 4 2 1 28 28 H 1.08998 * 109.47266 * 184.65050 * 4 2 1 29 29 H 0.97000 * 119.99984 * 179.97438 * 9 8 6 30 30 H 1.08996 * 109.57797 * 62.51127 * 14 5 4 31 31 H 1.08998 * 109.51419 * 302.29410 * 14 5 4 32 32 H 1.09001 * 109.50577 * 297.67403 * 15 14 5 33 33 H 1.09004 * 109.50345 * 177.59442 * 15 14 5 34 34 H 1.09000 * 109.46185 * 60.81166 * 16 15 14 35 35 H 1.08994 * 109.46293 * 180.79741 * 16 15 14 36 36 H 1.08992 * 109.47086 * 63.95333 * 18 17 16 37 37 H 1.08997 * 109.47104 * 183.95575 * 18 17 16 38 38 H 1.09002 * 109.47076 * 303.95311 * 18 17 16 39 39 H 1.09003 * 109.46473 * 58.26893 * 19 17 16 40 40 H 1.08998 * 109.46554 * 178.24099 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6278 -2.1935 1.1922 6 6 0.1330 -2.3046 1.3483 7 1 -0.4694 -2.6732 0.5311 8 6 -0.4657 -1.9357 2.5342 9 7 -1.6670 -2.3812 2.8308 10 14 0.4296 -0.8031 3.7196 11 1 0.0927 0.6086 3.4052 12 1 0.0128 -1.1134 5.1108 13 1 1.8947 -1.0042 3.5853 14 6 2.3184 -2.9620 2.3234 15 6 1.9479 -4.4442 2.2217 16 6 2.3576 -4.9751 0.8461 17 7 1.6700 -4.2081 -0.2005 18 6 1.9314 -4.7786 -1.5288 19 6 2.0467 -2.7896 -0.1536 20 1 -0.3634 0.3443 0.9683 21 1 -0.3633 0.6664 -0.7823 22 1 -0.3633 -1.0106 -0.1860 23 1 1.8934 -0.5138 -0.8899 24 1 3.1265 1.4438 -0.0874 25 1 1.6071 1.9810 -0.8430 26 1 1.7498 1.9305 0.9305 27 1 1.6102 -0.2577 2.1373 28 1 3.1268 -0.6495 1.2919 29 1 -2.0880 -2.1220 3.6653 30 1 1.9894 -2.5694 3.2855 31 1 3.3988 -2.8495 2.2333 32 1 0.8718 -4.5600 2.3507 33 1 2.4698 -5.0039 2.9979 34 1 3.4357 -4.8716 0.7232 35 1 2.0821 -6.0266 0.7658 36 1 1.5125 -5.7834 -1.5816 37 1 1.4687 -4.1516 -2.2910 38 1 3.0070 -4.8239 -1.6995 39 1 3.1263 -2.6964 -0.2718 40 1 1.5456 -2.2539 -0.9598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:44 Heat of formation + Delta-G solvation = -6.449350 kcal Electronic energy + Delta-G solvation = -17588.281722 eV Core-core repulsion = 15209.577424 eV Total energy + Delta-G solvation = -2378.704298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62394 -37.35264 -34.82690 -33.55917 -31.91372 -28.14263 -27.77564 -26.94090 -26.46117 -23.79889 -22.36503 -20.65341 -20.35721 -17.70487 -17.12620 -16.69161 -15.63771 -15.40209 -15.30225 -15.24876 -14.51363 -14.38372 -14.19723 -13.65778 -13.54059 -13.36756 -13.09560 -12.87606 -12.62911 -12.46355 -12.29730 -12.02752 -11.80590 -11.61947 -11.53593 -11.28823 -11.24857 -10.89722 -10.56881 -10.22570 -10.05980 -8.85921 -8.08204 -5.86407 1.34712 1.40847 1.45885 2.48374 3.20598 3.37402 3.97674 4.20579 4.22276 4.29540 4.37284 4.46111 4.56049 4.66484 4.68680 4.77318 4.78612 4.86375 4.93561 4.94830 5.00546 5.05712 5.09157 5.12583 5.16664 5.21254 5.34114 5.36436 5.38443 5.56230 5.67796 5.71873 5.79654 5.99394 6.02377 6.45479 6.51779 6.69334 7.05430 7.63068 9.09149 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021666 B = 0.015243 C = 0.011491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.026782 B = 1836.415204 C = 2436.039074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.113 4.113 5 C 0.038 3.962 6 C -0.423 4.423 7 H 0.041 0.959 8 C 0.025 3.975 9 N -0.946 5.946 10 Si 0.892 3.108 11 H -0.294 1.294 12 H -0.326 1.326 13 H -0.212 1.212 14 C -0.119 4.119 15 C -0.106 4.106 16 C 0.072 3.928 17 N -0.555 5.555 18 C 0.030 3.970 19 C 0.090 3.910 20 H 0.017 0.983 21 H 0.040 0.960 22 H 0.068 0.932 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.031 0.969 28 H 0.057 0.943 29 H 0.252 0.748 30 H 0.040 0.960 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.029 0.971 39 H 0.023 0.977 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.307 0.434 -6.256 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 C -0.201 4.201 4 C -0.150 4.150 5 C 0.037 3.963 6 C -0.461 4.461 7 H 0.059 0.941 8 C -0.170 4.170 9 N -0.589 5.589 10 Si 0.725 3.275 11 H -0.222 1.222 12 H -0.256 1.256 13 H -0.136 1.136 14 C -0.156 4.156 15 C -0.144 4.144 16 C -0.056 4.056 17 N -0.279 5.279 18 C -0.118 4.118 19 C -0.037 4.037 20 H 0.036 0.964 21 H 0.059 0.941 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.691 0.392 -6.068 12.299 hybrid contribution 0.320 0.700 1.034 1.289 sum 11.010 1.091 -5.034 12.156 Atomic orbital electron populations 1.21976 0.96053 1.02321 0.98610 1.21014 0.95532 0.95741 0.97939 1.21872 1.01238 0.95841 1.01123 1.22119 0.98637 0.97214 0.97056 1.18655 0.94525 0.90932 0.92214 1.20559 0.90541 1.37359 0.97679 0.94059 1.25325 0.95052 0.97937 0.98684 1.70159 1.18362 1.45720 1.24617 0.87224 0.82653 0.80315 0.77338 1.22191 1.25619 1.13593 1.22082 0.98068 0.96289 0.99196 1.21415 1.01103 0.95696 0.96199 1.21927 0.95037 0.97212 0.91411 1.61691 1.59338 1.02922 1.03976 1.22339 0.98951 1.00432 0.90053 1.21956 0.95824 0.87773 0.98185 0.96371 0.94122 0.91318 0.90500 0.91580 0.91827 0.94491 0.95047 0.92471 0.93924 0.94147 0.93004 0.93490 0.91735 0.94797 0.90901 0.91299 0.91706 0.95221 0.95897 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.42 7.84 71.98 0.56 -4.86 16 2 C -0.08 -2.94 2.48 -10.79 -0.03 -2.97 16 3 C -0.14 -4.16 9.18 71.98 0.66 -3.50 16 4 C -0.11 -4.38 3.24 30.60 0.10 -4.28 16 5 C 0.04 1.59 0.28 -52.85 -0.01 1.58 16 6 C -0.42 -21.92 3.73 25.60 0.10 -21.82 16 7 H 0.04 2.46 7.20 -2.91 -0.02 2.44 16 8 C 0.02 1.40 4.85 84.66 0.41 1.81 16 9 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 10 Si 0.89 44.33 22.12 68.60 1.52 45.84 16 11 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 12 H -0.33 -17.06 7.11 99.48 0.71 -16.35 16 13 H -0.21 -9.33 4.43 99.48 0.44 -8.89 16 14 C -0.12 -4.83 4.19 30.70 0.13 -4.70 16 15 C -0.11 -4.15 5.83 30.65 0.18 -3.98 16 16 C 0.07 2.43 5.46 86.33 0.47 2.90 16 17 N -0.55 -20.34 4.52 -922.61 -4.17 -24.51 16 18 C 0.03 0.86 9.62 127.69 1.23 2.09 16 19 C 0.09 3.32 3.50 86.33 0.30 3.62 16 20 H 0.02 0.81 6.71 -2.39 -0.02 0.79 16 21 H 0.04 1.43 8.09 -2.39 -0.02 1.41 16 22 H 0.07 3.19 5.12 -2.39 -0.01 3.18 16 23 H 0.08 2.47 6.05 -2.39 -0.01 2.46 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 26 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.03 1.35 2.62 -2.39 -0.01 1.35 16 28 H 0.06 1.96 8.13 -2.39 -0.02 1.94 16 29 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.04 1.78 3.92 -2.39 -0.01 1.77 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 2.25 7.35 -2.39 -0.02 2.23 16 33 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.78 8.02 -2.39 -0.02 1.76 16 38 H 0.03 0.73 8.14 -2.39 -0.02 0.72 16 39 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 2.48 6.17 -2.39 -0.01 2.47 16 Total: -1.00 -61.94 278.50 2.47 -59.47 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.72 Total: 11.76 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 4.10 Total: -34.11 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -3.87 Total: -82.96 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.52 Total: 45.84 kcal Total: -61.94 2.47 -59.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.020 kcal (2) G-P(sol) polarization free energy of solvation -61.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds