Wall clock time and date at job start Mon Mar 30 2020 03:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46813 * 2 1 4 4 C 1.53000 * 109.46907 * 240.00343 * 2 1 3 5 5 C 1.52997 * 109.47559 * 119.99911 * 2 1 3 6 6 C 1.53000 * 109.46710 * 59.99967 * 5 2 1 7 7 C 1.53000 * 109.46967 * 180.02562 * 6 5 2 8 8 H 1.09009 * 110.36896 * 52.65184 * 7 6 5 9 9 N 1.48564 * 110.41399 * 290.17232 * 7 6 5 10 10 C 1.48559 * 104.22354 * 201.73691 * 9 7 6 11 11 C 1.54379 * 104.59555 * 39.48373 * 10 9 7 12 12 C 1.54267 * 105.06062 * 336.14526 * 11 10 9 13 13 H 1.08996 * 110.40799 * 118.93745 * 12 11 10 14 14 C 1.50695 * 110.32445 * 241.10674 * 12 11 10 15 15 H 1.07995 * 120.00496 * 115.63600 * 14 12 11 16 16 C 1.37880 * 119.99572 * 295.63533 * 14 12 11 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 H 1.09004 * 109.46656 * 299.99658 * 1 2 3 23 23 H 1.08997 * 109.47068 * 59.99657 * 1 2 3 24 24 H 1.08989 * 109.46840 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47073 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47204 * 299.99735 * 3 2 1 27 27 H 1.08995 * 109.47106 * 60.00518 * 3 2 1 28 28 H 1.09002 * 109.47047 * 299.99714 * 4 2 1 29 29 H 1.08997 * 109.47257 * 60.00116 * 4 2 1 30 30 H 1.09005 * 109.47011 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.46909 * 300.00239 * 5 2 1 32 32 H 1.08997 * 109.47531 * 179.97438 * 5 2 1 33 33 H 1.08997 * 109.47212 * 60.00458 * 6 5 2 34 34 H 1.09005 * 109.47397 * 300.00005 * 6 5 2 35 35 H 1.00905 * 110.99557 * 321.29734 * 9 7 6 36 36 H 1.09000 * 110.40573 * 158.26117 * 10 9 7 37 37 H 1.08990 * 110.41292 * 280.58186 * 10 9 7 38 38 H 1.08994 * 110.32202 * 217.24866 * 11 10 9 39 39 H 1.08997 * 110.32362 * 95.03620 * 11 10 9 40 40 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5301 -2.1637 1.2492 7 6 2.0397 -2.8848 2.4987 8 1 1.7948 -2.3124 3.3935 9 7 3.5059 -3.1062 2.4075 10 6 3.7644 -4.2294 3.3448 11 6 2.5714 -5.1879 3.1419 12 6 1.4367 -4.3033 2.5853 13 1 1.1366 -4.6481 1.5958 14 6 0.2568 -4.3142 3.5227 15 1 -0.0477 -3.4042 4.0181 16 6 -0.4340 -5.4860 3.7477 17 7 -0.0629 -6.5943 3.1448 18 14 -1.8970 -5.4994 4.9091 19 1 -2.9344 -4.5617 4.4093 20 1 -1.4581 -5.0760 6.2631 21 1 -2.4620 -6.8710 4.9778 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 -1.0276 0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2493 29 1 1.6767 -0.2073 -2.1392 30 1 3.1300 -0.7208 -1.2495 31 1 1.6768 -0.2074 2.1391 32 1 3.1301 -0.7216 1.2490 33 1 1.8935 -2.6775 0.3592 34 1 0.4401 -2.1637 1.2492 35 1 3.7768 -3.3506 1.4667 36 1 4.7000 -4.7280 3.0916 37 1 3.7934 -3.8678 4.3726 38 1 2.2749 -5.6299 4.0931 39 1 2.8297 -5.9675 2.4253 40 1 0.6966 -6.5873 2.5414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260539159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:09 Heat of formation + Delta-G solvation = -40.751049 kcal Electronic energy + Delta-G solvation = -16429.706489 eV Core-core repulsion = 14049.514757 eV Total energy + Delta-G solvation = -2380.191732 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.59614 -37.16313 -32.96444 -31.36323 -28.49500 -27.24936 -27.12258 -26.86538 -24.08910 -22.38763 -20.41407 -19.30090 -18.31818 -16.77451 -15.38865 -14.71487 -14.42973 -13.91922 -13.73344 -13.66479 -13.44374 -13.25146 -12.63762 -12.34304 -11.74676 -11.65300 -11.54437 -11.37315 -11.15574 -10.93285 -10.83440 -10.67574 -10.60233 -10.30508 -10.11137 -10.08537 -9.94994 -9.72244 -9.30433 -8.48868 -8.32174 -7.81806 -6.33415 -4.04159 3.43672 3.44782 3.63511 4.53758 4.92553 5.01043 5.01304 5.08261 5.38477 5.57736 5.63222 5.67181 5.76797 5.82986 5.88048 5.90863 5.95398 6.01805 6.12370 6.14027 6.21513 6.24809 6.30569 6.43436 6.43879 6.50962 6.57646 6.64761 6.72150 6.88049 6.95789 7.04086 7.29591 7.50852 7.60193 8.07191 8.28668 8.44698 8.90139 9.67907 11.05682 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026786 B = 0.007586 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.077998 B = 3689.892109 C = 4332.757203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.072 4.072 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.101 4.101 6 C -0.110 4.110 7 C 0.079 3.921 8 H 0.077 0.923 9 N -0.673 5.673 10 C 0.041 3.959 11 C -0.146 4.146 12 C 0.010 3.990 13 H 0.018 0.982 14 C -0.587 4.587 15 H 0.048 0.952 16 C 0.018 3.982 17 N -0.913 5.913 18 Si 1.065 2.935 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.283 1.283 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.321 0.679 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 10.727 -5.661 12.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.072 4.072 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.138 4.138 6 C -0.147 4.147 7 C -0.030 4.030 8 H 0.096 0.904 9 N -0.299 5.299 10 C -0.089 4.089 11 C -0.186 4.186 12 C -0.010 4.010 13 H 0.036 0.964 14 C -0.626 4.626 15 H 0.067 0.933 16 C -0.186 4.186 17 N -0.549 5.549 18 Si 0.893 3.107 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.209 1.209 22 H 0.072 0.928 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.136 0.864 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.247 10.328 -4.567 11.750 hybrid contribution 0.764 0.077 -1.086 1.330 sum 4.011 10.405 -5.654 12.503 Atomic orbital electron populations 1.21927 0.94889 1.02294 1.00966 1.20587 0.95580 0.95005 0.96049 1.21857 1.00728 0.95877 1.01141 1.21909 1.00697 1.00636 0.96603 1.21588 1.00721 0.95546 0.95956 1.21745 1.01209 0.94563 0.97227 1.22687 0.85680 0.97409 0.97219 0.90443 1.63545 1.16745 1.39262 1.10344 1.22921 0.97228 0.91243 0.97482 1.23080 0.96187 0.97872 1.01414 1.20099 0.93910 0.90548 0.96398 0.96373 1.21947 1.14343 0.97441 1.28843 0.93336 1.25764 1.01509 0.92418 0.98957 1.70782 1.27835 1.28489 1.27791 0.83601 0.75527 0.75900 0.75641 1.21499 1.21502 1.20870 0.92845 0.93446 0.91931 0.92918 0.93248 0.92904 0.92213 0.93424 0.92931 0.92527 0.91665 0.92803 0.91138 0.86448 0.92878 0.91407 0.91409 0.94614 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.12 37.16 0.30 -1.55 16 2 C -0.07 -0.92 0.80 -154.51 -0.12 -1.04 16 3 C -0.14 -1.55 8.47 37.16 0.31 -1.24 16 4 C -0.14 -1.72 8.12 37.16 0.30 -1.42 16 5 C -0.10 -1.50 4.20 -26.73 -0.11 -1.62 16 6 C -0.11 -1.94 3.94 -26.73 -0.11 -2.04 16 7 C 0.08 1.63 2.72 -66.07 -0.18 1.46 16 8 H 0.08 1.74 7.69 -51.92 -0.40 1.35 16 9 N -0.67 -12.56 7.15 -102.75 -0.73 -13.29 16 10 C 0.04 0.80 7.47 -2.18 -0.02 0.78 16 11 C -0.15 -3.38 5.16 -25.35 -0.13 -3.51 16 12 C 0.01 0.26 2.16 -90.39 -0.20 0.06 16 13 H 0.02 0.48 7.66 -51.93 -0.40 0.09 16 14 C -0.59 -16.26 8.33 -34.44 -0.29 -16.54 16 15 H 0.05 1.35 7.55 -52.49 -0.40 0.95 16 16 C 0.02 0.50 5.15 -17.82 -0.09 0.41 16 17 N -0.91 -27.38 13.39 55.43 0.74 -26.64 16 18 Si 1.06 25.21 29.90 -169.99 -5.08 20.13 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.89 6.43 -51.94 -0.33 0.55 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.99 7.96 -51.93 -0.41 0.58 16 33 H 0.05 0.92 6.29 -51.93 -0.33 0.60 16 34 H 0.07 1.34 6.43 -51.93 -0.33 1.01 16 35 H 0.32 5.59 8.54 -39.29 -0.34 5.25 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.07 1.75 7.43 -51.93 -0.39 1.36 16 39 H 0.04 0.81 7.98 -51.93 -0.41 0.40 16 40 H 0.27 8.06 6.14 -40.82 -0.25 7.81 16 LS Contribution 304.35 15.07 4.59 4.59 Total: -1.00 -28.68 304.35 -8.16 -36.84 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.34 Total: 4.62 kcal Atomic # 6 Polarization: -25.93 SS G_CDS: -0.32 Total: -26.25 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.01 Total: -39.93 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.08 Total: 20.13 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.68 -8.16 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.912 kcal (2) G-P(sol) polarization free energy of solvation -28.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds