Wall clock time and date at job start Mon Mar 30 2020 03:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46813 * 2 1 4 4 C 1.53000 * 109.46907 * 240.00343 * 2 1 3 5 5 C 1.52997 * 109.47559 * 119.99911 * 2 1 3 6 6 C 1.53000 * 109.46710 * 59.99967 * 5 2 1 7 7 C 1.53000 * 109.46967 * 180.02562 * 6 5 2 8 8 H 1.09009 * 110.36896 * 52.65184 * 7 6 5 9 9 N 1.48564 * 110.41399 * 290.17232 * 7 6 5 10 10 C 1.48559 * 104.22354 * 201.73691 * 9 7 6 11 11 C 1.54379 * 104.59555 * 39.48373 * 10 9 7 12 12 C 1.54267 * 105.06062 * 336.14526 * 11 10 9 13 13 H 1.08996 * 110.40799 * 118.93745 * 12 11 10 14 14 C 1.50695 * 110.32445 * 241.10674 * 12 11 10 15 15 H 1.07995 * 120.00496 * 115.63600 * 14 12 11 16 16 C 1.37880 * 119.99572 * 295.63533 * 14 12 11 17 17 N 1.31511 * 120.00327 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99951 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47297 * 59.99744 * 18 16 14 20 20 H 1.48503 * 109.47261 * 299.99924 * 18 16 14 21 21 H 1.48500 * 109.47454 * 179.97438 * 18 16 14 22 22 H 1.09004 * 109.46656 * 299.99658 * 1 2 3 23 23 H 1.08997 * 109.47068 * 59.99657 * 1 2 3 24 24 H 1.08989 * 109.46840 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47073 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47204 * 299.99735 * 3 2 1 27 27 H 1.08995 * 109.47106 * 60.00518 * 3 2 1 28 28 H 1.09002 * 109.47047 * 299.99714 * 4 2 1 29 29 H 1.08997 * 109.47257 * 60.00116 * 4 2 1 30 30 H 1.09005 * 109.47011 * 179.97438 * 4 2 1 31 31 H 1.08997 * 109.46909 * 300.00239 * 5 2 1 32 32 H 1.08997 * 109.47531 * 179.97438 * 5 2 1 33 33 H 1.08997 * 109.47212 * 60.00458 * 6 5 2 34 34 H 1.09005 * 109.47397 * 300.00005 * 6 5 2 35 35 H 1.00905 * 110.99557 * 321.29734 * 9 7 6 36 36 H 1.09000 * 110.40573 * 158.26117 * 10 9 7 37 37 H 1.08990 * 110.41292 * 280.58186 * 10 9 7 38 38 H 1.08994 * 110.32202 * 217.24866 * 11 10 9 39 39 H 1.08997 * 110.32362 * 95.03620 * 11 10 9 40 40 H 0.97006 * 119.99995 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 6 1.5301 -2.1637 1.2492 7 6 2.0397 -2.8848 2.4987 8 1 1.7948 -2.3124 3.3935 9 7 3.5059 -3.1062 2.4075 10 6 3.7644 -4.2294 3.3448 11 6 2.5714 -5.1879 3.1419 12 6 1.4367 -4.3033 2.5853 13 1 1.1366 -4.6481 1.5958 14 6 0.2568 -4.3142 3.5227 15 1 -0.0477 -3.4042 4.0181 16 6 -0.4340 -5.4860 3.7477 17 7 -0.0629 -6.5943 3.1448 18 14 -1.8970 -5.4994 4.9091 19 1 -2.9344 -4.5617 4.4093 20 1 -1.4581 -5.0760 6.2631 21 1 -2.4620 -6.8710 4.9778 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 -1.0276 0.0005 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2493 29 1 1.6767 -0.2073 -2.1392 30 1 3.1300 -0.7208 -1.2495 31 1 1.6768 -0.2074 2.1391 32 1 3.1301 -0.7216 1.2490 33 1 1.8935 -2.6775 0.3592 34 1 0.4401 -2.1637 1.2492 35 1 3.7768 -3.3506 1.4667 36 1 4.7000 -4.7280 3.0916 37 1 3.7934 -3.8678 4.3726 38 1 2.2749 -5.6299 4.0931 39 1 2.8297 -5.9675 2.4253 40 1 0.6966 -6.5873 2.5414 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260539159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:08 Heat of formation + Delta-G solvation = -57.615928 kcal Electronic energy + Delta-G solvation = -16430.437805 eV Core-core repulsion = 14049.514757 eV Total energy + Delta-G solvation = -2380.923048 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15744 -38.46021 -35.04591 -32.81624 -30.42053 -28.56007 -28.11836 -28.06324 -26.07138 -23.91702 -22.08314 -21.15809 -19.48341 -18.81137 -16.90071 -16.07130 -15.84500 -15.56003 -15.41606 -15.09131 -14.93975 -14.74426 -14.09499 -13.52837 -13.40676 -13.09632 -12.80976 -12.68486 -12.59903 -12.49436 -12.32550 -12.10370 -12.05350 -11.96573 -11.72761 -11.57361 -11.26879 -11.25939 -10.88593 -10.57726 -10.47061 -9.50403 -8.61042 -6.31966 1.49939 1.57265 1.76297 2.55402 3.19050 3.42019 3.79086 3.96880 3.99520 4.08877 4.24530 4.33991 4.42459 4.48886 4.61927 4.71066 4.76555 4.81762 4.83937 4.88026 4.96455 5.00406 5.03597 5.07200 5.13043 5.15129 5.25212 5.28399 5.34934 5.43153 5.49895 5.57401 5.60906 5.65359 5.74534 6.15869 6.21407 6.53713 6.66821 7.47815 8.78722 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026786 B = 0.007586 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.077998 B = 3689.892109 C = 4332.757203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.071 4.071 3 C -0.135 4.135 4 C -0.140 4.140 5 C -0.091 4.091 6 C -0.100 4.100 7 C 0.089 3.911 8 H 0.059 0.941 9 N -0.657 5.657 10 C 0.050 3.950 11 C -0.140 4.140 12 C 0.002 3.998 13 H -0.008 1.008 14 C -0.598 4.598 15 H 0.042 0.958 16 C -0.032 4.032 17 N -0.938 5.938 18 Si 1.108 2.892 19 H -0.272 1.272 20 H -0.273 1.273 21 H -0.285 1.285 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.334 0.666 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 12.366 -6.054 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.192 4.192 4 C -0.197 4.197 5 C -0.128 4.128 6 C -0.138 4.138 7 C -0.020 4.020 8 H 0.077 0.923 9 N -0.283 5.283 10 C -0.079 4.079 11 C -0.180 4.180 12 C -0.018 4.018 13 H 0.010 0.990 14 C -0.637 4.637 15 H 0.060 0.940 16 C -0.230 4.230 17 N -0.575 5.575 18 Si 0.931 3.069 19 H -0.197 1.197 20 H -0.198 1.198 21 H -0.211 1.211 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.149 0.851 36 H 0.104 0.896 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.971 11.989 -4.973 13.574 hybrid contribution 0.558 -0.443 -0.985 1.216 sum 4.529 11.546 -5.959 13.759 Atomic orbital electron populations 1.21925 0.95195 1.01233 1.01732 1.20577 0.95331 0.96072 0.95099 1.21814 1.01099 0.94406 1.01898 1.21892 1.01143 0.99821 0.96843 1.21493 1.00737 0.93567 0.97039 1.21629 0.99963 0.96344 0.95848 1.22467 0.86680 0.94982 0.97904 0.92319 1.63480 1.14961 1.38775 1.11119 1.22886 0.96844 0.90435 0.97785 1.22920 0.97407 0.98284 0.99379 1.20135 0.93923 0.93470 0.94290 0.99022 1.22301 1.15352 0.97090 1.28924 0.93973 1.27131 1.03856 0.92140 0.99876 1.70899 1.28219 1.29399 1.29011 0.83038 0.73085 0.76150 0.74649 1.19711 1.19796 1.21050 0.93082 0.91710 0.93888 0.92314 0.91809 0.92899 0.93685 0.91904 0.92211 0.93270 0.91287 0.92255 0.93057 0.85087 0.89602 0.91466 0.94673 0.94900 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.12 71.98 0.58 -2.95 16 2 C -0.07 -1.67 0.80 -52.18 -0.04 -1.71 16 3 C -0.13 -2.63 8.47 71.98 0.61 -2.02 16 4 C -0.14 -3.09 8.12 71.98 0.58 -2.51 16 5 C -0.09 -2.60 4.20 30.59 0.13 -2.47 16 6 C -0.10 -3.51 3.94 30.59 0.12 -3.39 16 7 C 0.09 3.69 2.72 45.06 0.12 3.81 16 8 H 0.06 2.66 7.69 -2.38 -0.02 2.64 16 9 N -0.66 -23.44 7.15 -478.98 -3.43 -26.87 16 10 C 0.05 1.89 7.47 86.45 0.65 2.53 16 11 C -0.14 -6.58 5.16 31.49 0.16 -6.42 16 12 C 0.00 0.09 2.16 -10.64 -0.02 0.07 16 13 H -0.01 -0.46 7.66 -2.39 -0.02 -0.48 16 14 C -0.60 -33.91 8.33 25.60 0.21 -33.69 16 15 H 0.04 2.38 7.55 -2.91 -0.02 2.36 16 16 C -0.03 -1.84 5.15 84.66 0.44 -1.40 16 17 N -0.94 -57.68 13.39 21.45 0.29 -57.39 16 18 Si 1.11 51.00 29.90 68.60 2.05 53.06 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.04 1.21 6.43 -2.39 -0.02 1.19 16 25 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 1.12 6.43 -2.39 -0.02 1.10 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.93 7.96 -2.39 -0.02 1.91 16 33 H 0.06 2.01 6.29 -2.39 -0.02 1.99 16 34 H 0.05 2.00 6.43 -2.38 -0.02 1.98 16 35 H 0.33 10.85 8.54 -89.69 -0.77 10.08 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.03 1.85 7.43 -2.39 -0.02 1.83 16 39 H 0.03 1.52 7.98 -2.39 -0.02 1.50 16 40 H 0.26 16.02 6.14 -92.70 -0.57 15.45 16 Total: -1.00 -62.38 304.35 2.87 -59.50 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.42 Total: 21.85 kcal Atomic # 6 Polarization: -53.69 SS G_CDS: 3.54 Total: -50.15 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -3.14 Total: -84.26 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.06 kcal Total: -62.38 2.87 -59.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260539159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.888 kcal (2) G-P(sol) polarization free energy of solvation -62.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds