Wall clock time and date at job start Mon Mar 30 2020 03:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47394 * 2 1 4 4 C 1.53004 * 109.46656 * 120.00058 * 2 1 3 5 5 C 1.53001 * 109.47219 * 90.48180 * 4 2 1 6 6 C 1.50702 * 109.46805 * 210.47412 * 4 2 1 7 7 H 1.08002 * 119.99586 * 114.98503 * 6 4 2 8 8 C 1.37878 * 120.00327 * 294.99356 * 6 4 2 9 9 N 1.31521 * 119.99809 * 168.22417 * 8 6 4 10 10 Si 1.86800 * 119.99961 * 347.94427 * 8 6 4 11 11 H 1.48505 * 109.46798 * 276.15154 * 10 8 6 12 12 H 1.48492 * 109.46872 * 36.14567 * 10 8 6 13 13 H 1.48495 * 109.47008 * 156.14775 * 10 8 6 14 14 N 1.46895 * 109.47362 * 330.47686 * 4 2 1 15 15 C 1.46848 * 110.99911 * 299.17155 * 14 4 2 16 16 C 1.53047 * 109.51954 * 174.16073 * 15 14 4 17 17 C 1.53121 * 109.27852 * 59.17939 * 16 15 14 18 18 C 1.53117 * 109.15912 * 302.34644 * 17 16 15 19 19 C 1.46847 * 111.00041 * 174.95805 * 14 4 2 20 20 H 1.09007 * 109.46996 * 305.88058 * 1 2 3 21 21 H 1.09004 * 109.46948 * 65.87197 * 1 2 3 22 22 H 1.08992 * 109.47410 * 185.87747 * 1 2 3 23 23 H 1.08998 * 109.46950 * 239.99568 * 2 1 3 24 24 H 1.09004 * 109.47302 * 184.98200 * 3 2 1 25 25 H 1.08998 * 109.47357 * 304.98573 * 3 2 1 26 26 H 1.09005 * 109.46795 * 64.98060 * 3 2 1 27 27 H 1.08990 * 109.47395 * 179.97438 * 5 4 2 28 28 H 1.09000 * 109.46832 * 299.99920 * 5 4 2 29 29 H 1.09002 * 109.47140 * 59.99152 * 5 4 2 30 30 H 0.96996 * 119.99292 * 179.72310 * 9 8 6 31 31 H 1.08998 * 109.46273 * 294.17485 * 15 14 4 32 32 H 1.08997 * 109.46264 * 54.14526 * 15 14 4 33 33 H 1.08996 * 109.49986 * 299.23547 * 16 15 14 34 34 H 1.08997 * 109.50039 * 179.12007 * 16 15 14 35 35 H 1.08996 * 109.52098 * 182.44234 * 17 16 15 36 36 H 1.09005 * 109.52153 * 62.24639 * 17 16 15 37 37 H 1.09003 * 109.50480 * 297.70988 * 18 17 16 38 38 H 1.09003 * 109.50343 * 177.60284 * 18 17 16 39 39 H 1.08997 * 109.46441 * 305.86187 * 19 14 4 40 40 H 1.08997 * 109.45967 * 65.82341 * 19 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 2.2213 -2.2089 0.9410 6 6 3.3619 -0.1300 1.6663 7 1 3.4472 0.3907 2.6086 8 6 4.4622 -0.2535 0.8447 9 7 5.5465 0.4501 1.0877 10 14 4.4157 -1.4260 -0.6088 11 1 4.7520 -2.7975 -0.1493 12 1 3.0551 -1.4230 -1.2036 13 1 5.4029 -0.9895 -1.6286 14 7 1.0669 -0.5620 2.3382 15 6 0.8818 0.8553 2.6753 16 6 -0.2400 0.9932 3.7073 17 6 0.1259 0.1945 4.9614 18 6 0.3607 -1.2684 4.5749 19 6 1.4649 -1.3408 3.5178 20 1 -0.3633 0.6024 0.8327 21 1 -0.3633 0.4201 -0.9379 22 1 -0.3634 -1.0222 0.1052 23 1 1.8933 -0.5139 -0.8899 24 1 3.1264 1.4437 -0.0892 25 1 1.6057 1.9814 -0.8419 26 1 1.7514 1.9299 0.9313 27 1 2.5849 -2.7227 1.8308 28 1 1.2652 -2.6366 0.6393 29 1 2.9433 -2.3271 0.1330 30 1 6.3220 0.3601 0.5120 31 1 1.8077 1.2539 3.0898 32 1 0.6179 1.4111 1.7756 33 1 -1.1693 0.6073 3.2883 34 1 -0.3666 2.0437 3.9689 35 1 -0.6895 0.2544 5.6822 36 1 1.0343 0.6050 5.4025 37 1 -0.5592 -1.6899 4.1696 38 1 0.6631 -1.8337 5.4564 39 1 1.6247 -2.3799 3.2300 40 1 2.3881 -0.9319 3.9283 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260599805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:55 Heat of formation + Delta-G solvation = 11.016294 kcal Electronic energy + Delta-G solvation = -17770.624272 eV Core-core repulsion = 15392.677341 eV Total energy + Delta-G solvation = -2377.946931 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90998 -37.29208 -34.25339 -33.37118 -31.69822 -30.47803 -28.36261 -26.39022 -25.18825 -23.54780 -22.64661 -20.90239 -20.46097 -18.11655 -17.26490 -16.23572 -16.04429 -15.49442 -15.05601 -14.87352 -14.69260 -14.43153 -14.24226 -13.89160 -13.77522 -13.20194 -12.99189 -12.77519 -12.54578 -12.40605 -12.25115 -11.89944 -11.86737 -11.79301 -11.47967 -11.21652 -11.11451 -10.92190 -10.73031 -10.52560 -10.04499 -8.77216 -8.26668 -6.21598 1.30516 1.32768 1.44623 2.33838 3.10882 3.36232 4.08130 4.11683 4.20289 4.26875 4.40905 4.54986 4.59716 4.61228 4.73618 4.77441 4.82452 4.91320 4.93906 5.04829 5.08222 5.11938 5.15534 5.21187 5.21984 5.23779 5.30925 5.38114 5.41296 5.50342 5.56449 5.63517 5.67623 5.88531 5.94767 6.32441 6.53111 6.65836 6.84163 7.43159 8.90183 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030591 B = 0.012001 C = 0.011243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.092944 B = 2332.663437 C = 2489.889990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C -0.132 4.132 4 C 0.205 3.795 5 C -0.148 4.148 6 C -0.510 4.510 7 H 0.029 0.971 8 C 0.029 3.971 9 N -0.946 5.946 10 Si 0.923 3.077 11 H -0.288 1.288 12 H -0.209 1.209 13 H -0.321 1.321 14 N -0.504 5.504 15 C 0.046 3.954 16 C -0.111 4.111 17 C -0.117 4.117 18 C -0.107 4.107 19 C 0.054 3.946 20 H 0.067 0.933 21 H 0.045 0.955 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.259 0.741 31 H -0.003 1.003 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.068 0.932 40 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.214 -2.372 1.734 13.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.120 4.120 3 C -0.189 4.189 4 C 0.115 3.885 5 C -0.205 4.205 6 C -0.548 4.548 7 H 0.047 0.953 8 C -0.168 4.168 9 N -0.586 5.586 10 Si 0.756 3.244 11 H -0.215 1.215 12 H -0.134 1.134 13 H -0.251 1.251 14 N -0.228 5.228 15 C -0.082 4.082 16 C -0.149 4.149 17 C -0.155 4.155 18 C -0.144 4.144 19 C -0.074 4.074 20 H 0.086 0.914 21 H 0.064 0.936 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -13.512 -2.514 1.538 13.829 hybrid contribution 2.169 -0.032 -0.210 2.179 sum -11.343 -2.546 1.329 11.701 Atomic orbital electron populations 1.21769 0.93647 1.01976 1.00784 1.21618 0.96756 0.96024 0.97556 1.21949 1.00467 0.96364 1.00146 1.18970 0.88266 0.91659 0.89631 1.22349 1.00223 0.98170 0.99744 1.21545 0.94792 1.34274 1.04236 0.95292 1.25572 0.95164 0.96417 0.99686 1.70106 1.05526 1.41786 1.41183 0.86634 0.78700 0.78774 0.80280 1.21545 1.13387 1.25080 1.62445 1.44867 1.08682 1.06759 1.22420 0.96249 0.90263 0.99239 1.21616 0.98361 0.99977 0.94949 1.21548 1.00805 0.95485 0.97633 1.21553 0.98723 0.96882 0.97293 1.22033 0.95770 0.98059 0.91585 0.91390 0.93558 0.92788 0.92235 0.94697 0.93672 0.92659 0.93279 0.91290 0.95119 0.93207 0.98436 0.89103 0.90388 0.91246 0.90002 0.94348 0.90481 0.91224 0.91411 0.98229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 8.30 71.98 0.60 -3.42 16 2 C -0.10 -4.03 1.78 -10.79 -0.02 -4.05 16 3 C -0.13 -5.57 7.85 71.98 0.57 -5.00 16 4 C 0.20 8.88 0.22 2.78 0.00 8.88 16 5 C -0.15 -6.11 7.16 71.98 0.52 -5.59 16 6 C -0.51 -27.46 5.67 25.60 0.15 -27.32 16 7 H 0.03 1.80 6.10 -2.91 -0.02 1.78 16 8 C 0.03 1.65 3.92 84.65 0.33 1.98 16 9 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16 10 Si 0.92 44.48 23.27 68.60 1.60 46.07 16 11 H -0.29 -13.72 7.09 99.48 0.71 -13.02 16 12 H -0.21 -8.87 3.99 99.48 0.40 -8.48 16 13 H -0.32 -16.00 7.11 99.48 0.71 -15.30 16 14 N -0.50 -19.23 3.48 -851.07 -2.96 -22.19 16 15 C 0.05 1.70 3.02 86.33 0.26 1.96 16 16 C -0.11 -3.14 6.09 30.65 0.19 -2.95 16 17 C -0.12 -3.17 6.00 30.67 0.18 -2.98 16 18 C -0.11 -3.01 6.09 30.64 0.19 -2.83 16 19 C 0.05 2.01 4.77 86.32 0.41 2.42 16 20 H 0.07 2.13 4.96 -2.38 -0.01 2.12 16 21 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 22 H 0.05 1.68 7.97 -2.39 -0.02 1.66 16 23 H 0.06 2.46 4.77 -2.39 -0.01 2.45 16 24 H 0.03 1.72 5.76 -2.39 -0.01 1.71 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 2.33 4.82 -2.38 -0.01 2.31 16 27 H 0.05 2.03 6.21 -2.39 -0.01 2.01 16 28 H 0.07 2.45 7.97 -2.39 -0.02 2.44 16 29 H 0.03 1.32 1.94 -2.39 0.00 1.32 16 30 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 31 H 0.00 -0.12 6.54 -2.39 -0.02 -0.14 16 32 H 0.09 3.30 3.14 -2.39 -0.01 3.29 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.48 5.89 -2.39 -0.01 2.46 16 40 H 0.00 -0.03 7.07 -2.39 -0.02 -0.05 16 Total: -1.00 -62.05 266.36 3.01 -59.04 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.71 Total: 14.40 kcal Atomic # 6 Polarization: -42.27 SS G_CDS: 3.37 Total: -38.90 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -2.66 Total: -80.61 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.60 Total: 46.07 kcal Total: -62.05 3.01 -59.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.056 kcal (2) G-P(sol) polarization free energy of solvation -62.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds