Wall clock time and date at job start Mon Mar 30 2020 03:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47323 * 2 1 4 4 C 1.53000 * 109.47197 * 239.99840 * 2 1 3 5 5 C 1.53004 * 109.47210 * 119.99977 * 2 1 3 6 6 C 1.53000 * 109.46802 * 66.06522 * 5 2 1 7 7 H 1.08994 * 110.35499 * 50.17478 * 6 5 2 8 8 C 1.54601 * 110.30970 * 288.02670 * 6 5 2 9 9 C 1.54934 * 102.92279 * 219.13070 * 8 6 5 10 10 N 1.48536 * 103.22787 * 37.41075 * 9 8 6 11 11 C 1.47894 * 105.82306 * 320.79575 * 10 9 8 12 12 H 1.09003 * 109.92160 * 144.67913 * 11 10 9 13 13 C 1.52996 * 109.92066 * 265.97370 * 11 10 9 14 14 C 1.50699 * 109.47025 * 292.59237 * 13 11 10 15 15 H 1.08000 * 120.00154 * 359.97438 * 14 13 11 16 16 C 1.37882 * 119.99785 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00208 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99747 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47138 * 89.99756 * 18 16 14 20 20 H 1.48500 * 109.46818 * 209.99709 * 18 16 14 21 21 H 1.48498 * 109.47075 * 329.99462 * 18 16 14 22 22 H 1.08999 * 109.46887 * 289.15031 * 1 2 3 23 23 H 1.08997 * 109.46735 * 49.14686 * 1 2 3 24 24 H 1.08996 * 109.46836 * 169.14739 * 1 2 3 25 25 H 1.08990 * 109.47423 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47011 * 300.00383 * 3 2 1 27 27 H 1.08999 * 109.46895 * 59.99853 * 3 2 1 28 28 H 1.08997 * 109.47016 * 300.00491 * 4 2 1 29 29 H 1.08999 * 109.46884 * 60.00402 * 4 2 1 30 30 H 1.08999 * 109.46984 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47054 * 306.06680 * 5 2 1 32 32 H 1.08995 * 109.46975 * 186.06852 * 5 2 1 33 33 H 1.09001 * 110.72477 * 337.48912 * 8 6 5 34 34 H 1.08998 * 110.72283 * 100.76908 * 8 6 5 35 35 H 1.09000 * 110.66759 * 278.98432 * 9 8 6 36 36 H 1.08995 * 110.81335 * 155.91464 * 9 8 6 37 37 H 1.00905 * 110.99996 * 200.27659 * 10 9 8 38 38 H 1.09010 * 109.47038 * 52.58772 * 13 11 10 39 39 H 1.08997 * 109.47360 * 172.58623 * 13 11 10 40 40 H 0.97002 * 120.00160 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0401 -0.7213 1.2493 6 6 1.6583 -2.2010 1.1753 7 1 1.9509 -2.6204 0.2128 8 6 0.1381 -2.3747 1.3966 9 6 0.0582 -3.6575 2.2617 10 7 1.2361 -3.5366 3.1585 11 6 2.3237 -2.9827 2.3233 12 1 2.9441 -2.3123 2.9182 13 6 3.1751 -4.1197 1.7548 14 6 3.9175 -4.8002 2.8759 15 1 3.7947 -4.4559 3.8921 16 6 4.7535 -5.8624 2.6041 17 7 4.9026 -6.2820 1.3666 18 14 5.6743 -6.7055 3.9936 19 1 4.8481 -7.8150 4.5334 20 1 6.9572 -7.2485 3.4794 21 1 5.9497 -5.7231 5.0726 22 1 -0.3633 0.3371 0.9708 23 1 -0.3633 0.6722 -0.7773 24 1 -0.3633 -1.0093 -0.1935 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6768 -0.2074 -2.1392 30 1 3.1301 -0.7209 -1.2494 31 1 1.5908 -0.2740 2.1359 32 1 3.1246 -0.6281 1.3052 33 1 -0.2735 -1.5206 1.9344 34 1 -0.3761 -2.5177 0.4463 35 1 0.1395 -4.5478 1.6381 36 1 -0.8653 -3.6776 2.8403 37 1 1.4942 -4.4346 3.5395 38 1 2.5295 -4.8422 1.2553 39 1 3.8900 -3.7151 1.0385 40 1 5.4911 -7.0291 1.1754 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261284763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:32 Heat of formation + Delta-G solvation = -30.732416 kcal Electronic energy + Delta-G solvation = -16519.657707 eV Core-core repulsion = 14139.900416 eV Total energy + Delta-G solvation = -2379.757291 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.20620 -36.50956 -32.96081 -30.36036 -30.12685 -27.48080 -27.14750 -26.44602 -24.75656 -22.31376 -20.23477 -19.11312 -18.47895 -16.21541 -15.71122 -14.82197 -14.47736 -14.31864 -14.18969 -13.71586 -13.09194 -12.67316 -12.38860 -12.07235 -11.83183 -11.72057 -11.67963 -11.48386 -11.36332 -11.00274 -10.95010 -10.71168 -10.59627 -10.37339 -10.22349 -10.16395 -9.99052 -9.73414 -9.45193 -8.91636 -8.38927 -7.53827 -6.02217 -4.05080 3.31162 3.37746 3.41902 4.44522 4.89736 4.97907 5.01717 5.12076 5.33300 5.37408 5.46739 5.62428 5.68235 5.75115 5.81514 5.88676 5.95088 5.98594 6.01895 6.07545 6.18556 6.22764 6.25416 6.33127 6.40643 6.49686 6.53439 6.61554 6.64260 6.72859 6.89986 7.00975 7.44862 7.70955 7.85365 7.99555 8.27899 8.40887 9.02999 9.59848 11.08719 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035716 B = 0.006742 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.770717 B = 4151.776981 C = 4494.357203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.144 4.144 5 C -0.095 4.095 6 C -0.099 4.099 7 H 0.077 0.923 8 C -0.115 4.115 9 C 0.033 3.967 10 N -0.670 5.670 11 C 0.079 3.921 12 H 0.070 0.930 13 C 0.003 3.997 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.065 0.935 37 H 0.346 0.654 38 H 0.013 0.987 39 H 0.019 0.981 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 10.891 -3.158 14.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C -0.197 4.197 4 C -0.201 4.201 5 C -0.133 4.133 6 C -0.118 4.118 7 H 0.095 0.905 8 C -0.153 4.153 9 C -0.096 4.096 10 N -0.301 5.301 11 C -0.031 4.031 12 H 0.088 0.912 13 C -0.035 4.035 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.071 0.929 23 H 0.063 0.937 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.164 0.836 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.387 11.385 -2.914 14.438 hybrid contribution 0.913 -1.405 0.064 1.677 sum -7.474 9.980 -2.850 12.790 Atomic orbital electron populations 1.22226 0.95092 1.02366 1.00949 1.20539 0.95474 0.94928 0.95976 1.21869 1.00928 0.95830 1.01074 1.21958 1.01172 1.00592 0.96387 1.21686 1.00619 0.94703 0.96269 1.22242 0.94618 0.95049 0.99862 0.90457 1.22785 0.96496 0.97672 0.98341 1.22978 0.95159 0.96789 0.94722 1.63275 1.04612 1.31070 1.31100 1.22439 0.92111 0.96699 0.91819 0.91193 1.19692 0.94718 0.92552 0.96503 1.21248 1.25931 1.14770 0.93958 0.92296 1.25031 0.96807 0.97088 0.95410 1.69971 1.38153 1.26892 1.18386 0.86601 0.79277 0.79777 0.82417 1.20687 1.21322 1.19798 0.92873 0.93749 0.91303 0.92790 0.93197 0.92977 0.91945 0.93456 0.92651 0.92125 0.92041 0.91276 0.92018 0.94710 0.91656 0.83587 0.96904 0.96298 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 7.09 37.16 0.26 -1.45 16 2 C -0.07 -0.87 0.80 -154.50 -0.12 -0.99 16 3 C -0.14 -1.56 8.45 37.16 0.31 -1.25 16 4 C -0.14 -1.85 7.97 37.16 0.30 -1.56 16 5 C -0.10 -1.42 3.64 -26.73 -0.10 -1.52 16 6 C -0.10 -1.69 2.34 -89.26 -0.21 -1.90 16 7 H 0.08 1.41 5.40 -51.93 -0.28 1.13 16 8 C -0.12 -1.75 4.62 -24.87 -0.11 -1.87 16 9 C 0.03 0.57 7.54 -1.90 -0.01 0.56 16 10 N -0.67 -13.35 7.38 -103.14 -0.76 -14.12 16 11 C 0.08 1.65 3.01 -66.65 -0.20 1.45 16 12 H 0.07 1.54 7.68 -51.93 -0.40 1.14 16 13 C 0.00 0.09 4.28 -27.89 -0.12 -0.03 16 14 C -0.52 -14.49 8.20 -34.44 -0.28 -14.77 16 15 H 0.06 1.62 7.70 -52.49 -0.40 1.21 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 18 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H 0.05 0.60 7.46 -51.93 -0.39 0.21 16 23 H 0.04 0.46 8.10 -51.93 -0.42 0.04 16 24 H 0.07 0.81 4.91 -51.93 -0.26 0.55 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.86 6.13 -51.93 -0.32 0.54 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.90 7.87 -51.93 -0.41 0.49 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 1.00 6.51 -51.93 -0.34 0.66 16 34 H 0.06 0.85 6.49 -51.93 -0.34 0.51 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.35 7.44 7.60 -39.29 -0.30 7.14 16 38 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 300.48 15.07 4.53 4.53 Total: -1.00 -28.83 300.48 -8.11 -36.94 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.21 Total: 3.82 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -0.39 Total: -21.77 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: -0.02 Total: -40.16 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.83 -8.11 -36.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.207 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds