Wall clock time and date at job start Mon Mar 30 2020 03:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47323 * 2 1 4 4 C 1.53000 * 109.47197 * 239.99840 * 2 1 3 5 5 C 1.53004 * 109.47210 * 119.99977 * 2 1 3 6 6 C 1.53000 * 109.46802 * 66.06522 * 5 2 1 7 7 H 1.08994 * 110.35499 * 50.17478 * 6 5 2 8 8 C 1.54601 * 110.30970 * 288.02670 * 6 5 2 9 9 C 1.54934 * 102.92279 * 219.13070 * 8 6 5 10 10 N 1.48536 * 103.22787 * 37.41075 * 9 8 6 11 11 C 1.47894 * 105.82306 * 320.79575 * 10 9 8 12 12 H 1.09003 * 109.92160 * 144.67913 * 11 10 9 13 13 C 1.52996 * 109.92066 * 265.97370 * 11 10 9 14 14 C 1.50699 * 109.47025 * 292.59237 * 13 11 10 15 15 H 1.08000 * 120.00154 * 359.97438 * 14 13 11 16 16 C 1.37882 * 119.99785 * 179.97438 * 14 13 11 17 17 N 1.31516 * 120.00208 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99747 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47138 * 89.99756 * 18 16 14 20 20 H 1.48500 * 109.46818 * 209.99709 * 18 16 14 21 21 H 1.48498 * 109.47075 * 329.99462 * 18 16 14 22 22 H 1.08999 * 109.46887 * 289.15031 * 1 2 3 23 23 H 1.08997 * 109.46735 * 49.14686 * 1 2 3 24 24 H 1.08996 * 109.46836 * 169.14739 * 1 2 3 25 25 H 1.08990 * 109.47423 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47011 * 300.00383 * 3 2 1 27 27 H 1.08999 * 109.46895 * 59.99853 * 3 2 1 28 28 H 1.08997 * 109.47016 * 300.00491 * 4 2 1 29 29 H 1.08999 * 109.46884 * 60.00402 * 4 2 1 30 30 H 1.08999 * 109.46984 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47054 * 306.06680 * 5 2 1 32 32 H 1.08995 * 109.46975 * 186.06852 * 5 2 1 33 33 H 1.09001 * 110.72477 * 337.48912 * 8 6 5 34 34 H 1.08998 * 110.72283 * 100.76908 * 8 6 5 35 35 H 1.09000 * 110.66759 * 278.98432 * 9 8 6 36 36 H 1.08995 * 110.81335 * 155.91464 * 9 8 6 37 37 H 1.00905 * 110.99996 * 200.27659 * 10 9 8 38 38 H 1.09010 * 109.47038 * 52.58772 * 13 11 10 39 39 H 1.08997 * 109.47360 * 172.58623 * 13 11 10 40 40 H 0.97002 * 120.00160 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0401 -0.7213 1.2493 6 6 1.6583 -2.2010 1.1753 7 1 1.9509 -2.6204 0.2128 8 6 0.1381 -2.3747 1.3966 9 6 0.0582 -3.6575 2.2617 10 7 1.2361 -3.5366 3.1585 11 6 2.3237 -2.9827 2.3233 12 1 2.9441 -2.3123 2.9182 13 6 3.1751 -4.1197 1.7548 14 6 3.9175 -4.8002 2.8759 15 1 3.7947 -4.4559 3.8921 16 6 4.7535 -5.8624 2.6041 17 7 4.9026 -6.2820 1.3666 18 14 5.6743 -6.7055 3.9936 19 1 4.8481 -7.8150 4.5334 20 1 6.9572 -7.2485 3.4794 21 1 5.9497 -5.7231 5.0726 22 1 -0.3633 0.3371 0.9708 23 1 -0.3633 0.6722 -0.7773 24 1 -0.3633 -1.0093 -0.1935 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7489 -1.2492 29 1 1.6768 -0.2074 -2.1392 30 1 3.1301 -0.7209 -1.2494 31 1 1.5908 -0.2740 2.1359 32 1 3.1246 -0.6281 1.3052 33 1 -0.2735 -1.5206 1.9344 34 1 -0.3761 -2.5177 0.4463 35 1 0.1395 -4.5478 1.6381 36 1 -0.8653 -3.6776 2.8403 37 1 1.4942 -4.4346 3.5395 38 1 2.5295 -4.8422 1.2553 39 1 3.8900 -3.7151 1.0385 40 1 5.4911 -7.0291 1.1754 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261284763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:32 Heat of formation + Delta-G solvation = -48.098042 kcal Electronic energy + Delta-G solvation = -16520.410737 eV Core-core repulsion = 14139.900416 eV Total energy + Delta-G solvation = -2380.510321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.56568 -37.78932 -35.06838 -31.93595 -31.69596 -28.84926 -28.14909 -27.69849 -26.42585 -24.09737 -21.69442 -20.69002 -19.55847 -18.37054 -17.24867 -16.43588 -16.20782 -15.50117 -15.32377 -14.88156 -14.45618 -14.30419 -13.94127 -13.66147 -13.42418 -13.06270 -12.90522 -12.86761 -12.69297 -12.55131 -12.38332 -12.23104 -12.04132 -11.83620 -11.70029 -11.43554 -11.35828 -11.16543 -11.14883 -10.64198 -10.60230 -9.22496 -8.22580 -6.33717 1.38235 1.38912 1.50557 2.38623 3.09501 3.60703 3.76672 3.85936 3.94375 4.13163 4.15885 4.41811 4.53480 4.63710 4.67868 4.77944 4.82042 4.87182 4.92362 4.95268 4.99232 5.02258 5.05325 5.14095 5.16202 5.23011 5.25452 5.32469 5.37645 5.45984 5.49412 5.61980 5.63207 5.71421 5.78656 6.13425 6.25925 6.56630 6.83039 7.36074 8.88790 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035716 B = 0.006742 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.770717 B = 4151.776981 C = 4494.357203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.137 4.137 4 C -0.144 4.144 5 C -0.090 4.090 6 C -0.094 4.094 7 H 0.062 0.938 8 C -0.103 4.103 9 C 0.029 3.971 10 N -0.670 5.670 11 C 0.084 3.916 12 H 0.057 0.943 13 C 0.016 3.984 14 C -0.536 4.536 15 H 0.060 0.940 16 C 0.002 3.998 17 N -0.933 5.933 18 Si 0.963 3.037 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.265 1.265 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.046 0.954 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.019 0.981 36 H 0.091 0.909 37 H 0.335 0.665 38 H -0.014 1.014 39 H -0.012 1.012 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.521 12.048 -2.575 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 C -0.195 4.195 4 C -0.201 4.201 5 C -0.127 4.127 6 C -0.113 4.113 7 H 0.080 0.920 8 C -0.140 4.140 9 C -0.101 4.101 10 N -0.299 5.299 11 C -0.026 4.026 12 H 0.075 0.925 13 C -0.023 4.023 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.196 4.196 17 N -0.573 5.573 18 Si 0.788 3.212 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.189 1.189 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.038 0.962 36 H 0.110 0.890 37 H 0.151 0.849 38 H 0.004 0.996 39 H 0.006 0.994 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.629 12.558 -2.328 15.995 hybrid contribution 1.297 -1.780 -0.144 2.207 sum -8.332 10.777 -2.471 13.845 Atomic orbital electron populations 1.22193 0.93652 1.02639 1.01911 1.20515 0.96584 0.95383 0.94132 1.21843 1.00584 0.94823 1.02212 1.21957 1.00373 1.00155 0.97638 1.21631 0.99717 0.93339 0.98051 1.22146 0.95950 0.95912 0.97287 0.92003 1.22788 0.94852 0.97156 0.99235 1.23151 0.94882 0.97249 0.94787 1.63308 1.04961 1.30209 1.31423 1.22283 0.92171 0.95153 0.92945 0.92481 1.19540 0.94081 0.93354 0.95291 1.21594 1.26181 1.15091 0.94478 0.92142 1.25951 0.97761 0.97854 0.98005 1.70104 1.39029 1.27555 1.20616 0.85469 0.77836 0.78743 0.79141 1.19685 1.20923 1.18917 0.92294 0.92138 0.91641 0.93438 0.91643 0.92245 0.93316 0.91533 0.93977 0.91566 0.93760 0.89512 0.89909 0.96247 0.89040 0.84919 0.99593 0.99370 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 7.09 71.98 0.51 -2.40 16 2 C -0.07 -1.54 0.80 -52.18 -0.04 -1.58 16 3 C -0.14 -2.76 8.45 71.98 0.61 -2.15 16 4 C -0.14 -3.58 7.97 71.98 0.57 -3.01 16 5 C -0.09 -2.61 3.64 30.60 0.11 -2.50 16 6 C -0.09 -3.21 2.34 -9.91 -0.02 -3.23 16 7 H 0.06 2.32 5.40 -2.39 -0.01 2.30 16 8 C -0.10 -2.93 4.62 31.80 0.15 -2.78 16 9 C 0.03 0.95 7.54 86.65 0.65 1.60 16 10 N -0.67 -26.62 7.38 -480.21 -3.55 -30.17 16 11 C 0.08 3.61 3.01 45.06 0.14 3.75 16 12 H 0.06 2.57 7.68 -2.39 -0.02 2.55 16 13 C 0.02 0.83 4.28 29.85 0.13 0.96 16 14 C -0.54 -30.56 8.20 25.60 0.21 -30.35 16 15 H 0.06 3.36 7.70 -2.91 -0.02 3.34 16 16 C 0.00 0.12 5.46 84.66 0.46 0.59 16 17 N -0.93 -57.26 13.29 21.45 0.28 -56.98 16 18 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 22 H 0.06 1.11 7.46 -2.39 -0.02 1.09 16 23 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 24 H 0.06 1.33 4.91 -2.39 -0.01 1.32 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.33 6.13 -2.39 -0.01 1.32 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.85 7.87 -2.39 -0.02 1.83 16 32 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 2.21 6.51 -2.39 -0.02 2.19 16 34 H 0.08 2.05 6.49 -2.39 -0.02 2.04 16 35 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.33 14.56 7.60 -89.69 -0.68 13.88 16 38 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 39 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -62.85 300.48 2.55 -60.30 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.31 Total: 21.09 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 3.47 Total: -41.10 kcal Atomic # 7 Polarization: -83.88 SS G_CDS: -3.26 Total: -87.14 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -62.85 2.55 -60.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261284763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.205 kcal (2) G-P(sol) polarization free energy of solvation -62.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds