Wall clock time and date at job start Mon Mar 30 2020 03:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00084 * 2 1 4 4 H 1.48500 * 109.47020 * 239.99880 * 3 2 1 5 5 H 1.48499 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46797 * 120.00404 * 3 2 1 7 7 C 1.37875 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00165 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00239 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47171 * 179.97438 * 11 10 9 13 13 C 1.52984 * 109.46681 * 295.03853 * 12 11 10 14 14 C 1.53014 * 109.46275 * 195.97918 * 13 12 11 15 15 C 1.53008 * 109.47064 * 284.04776 * 14 13 12 16 16 C 1.52995 * 109.45920 * 75.93723 * 15 14 13 17 17 C 1.52989 * 109.50569 * 44.01236 * 16 15 14 18 18 C 1.52997 * 109.48402 * 247.06623 * 17 16 15 19 19 C 1.52983 * 109.46061 * 174.99898 * 12 11 10 20 20 H 0.97009 * 119.99710 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47005 * 59.99578 * 9 7 2 22 22 H 1.09004 * 109.46504 * 300.00414 * 9 7 2 23 23 H 1.00899 * 110.99945 * 56.04782 * 10 9 7 24 24 H 1.09004 * 109.46949 * 59.99372 * 11 10 9 25 25 H 1.08998 * 109.46562 * 299.99904 * 11 10 9 26 26 H 1.09003 * 109.46477 * 55.01875 * 12 11 10 27 27 H 1.09002 * 109.47190 * 75.98001 * 13 12 11 28 28 H 1.09006 * 109.47488 * 315.97649 * 13 12 11 29 29 H 1.09002 * 109.47344 * 164.04472 * 14 13 12 30 30 H 1.09001 * 109.46856 * 44.04531 * 14 13 12 31 31 H 1.09003 * 109.47329 * 195.93883 * 15 14 13 32 32 H 1.09002 * 109.47320 * 315.93643 * 15 14 13 33 33 H 1.09001 * 109.46518 * 164.02095 * 16 15 14 34 34 H 1.08996 * 109.46642 * 283.99928 * 16 15 14 35 35 H 1.08998 * 109.46320 * 7.07013 * 17 16 15 36 36 H 1.08993 * 109.46434 * 127.05508 * 17 16 15 37 37 H 1.09004 * 109.47247 * 195.95270 * 18 17 16 38 38 H 1.09005 * 109.47840 * 315.95919 * 18 17 16 39 39 H 1.08996 * 109.47395 * 112.94891 * 19 12 11 40 40 H 1.09003 * 109.47689 * 352.94669 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5301 -6.0431 -0.0018 13 6 3.3248 -6.0120 -1.3086 14 6 4.0532 -7.3448 -1.4942 15 6 5.2700 -7.3943 -0.5678 16 6 4.8084 -7.6618 0.8661 17 6 3.7493 -8.7658 0.8642 18 6 2.4006 -8.1798 1.2865 19 6 1.8046 -7.3841 0.1233 20 1 -0.4850 0.8402 0.0004 21 1 0.6239 -2.5567 -0.8902 22 1 0.6246 -2.5570 0.8897 23 1 2.8403 -3.5488 0.7808 24 1 0.8805 -4.9812 -0.8914 25 1 0.8800 -4.9817 0.8886 26 1 3.2109 -5.9185 0.8403 27 1 4.0531 -5.2019 -1.2718 28 1 2.6437 -5.8507 -2.1444 29 1 4.3807 -7.4389 -2.5296 30 1 3.3777 -8.1649 -1.2508 31 1 5.9391 -8.1925 -0.8892 32 1 5.7964 -6.4406 -0.6083 33 1 5.6601 -7.9766 1.4691 34 1 4.3827 -6.7507 1.2866 35 1 3.6650 -9.1865 -0.1377 36 1 4.0402 -9.5493 1.5639 37 1 1.7223 -8.9884 1.5590 38 1 2.5428 -7.5205 2.1429 39 1 1.9228 -7.9489 -0.8014 40 1 0.7449 -7.2082 0.3087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300746236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:31 Heat of formation + Delta-G solvation = -23.473351 kcal Electronic energy + Delta-G solvation = -16137.128545 eV Core-core repulsion = 13757.686030 eV Total energy + Delta-G solvation = -2379.442515 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.42761 -35.46393 -33.11645 -32.78793 -31.69875 -27.96426 -25.92789 -25.64382 -23.05450 -21.93098 -21.15063 -19.78798 -19.18954 -16.44488 -15.68482 -15.15421 -14.74720 -14.24657 -14.06109 -13.91341 -13.54928 -13.24006 -12.86964 -12.37963 -12.22030 -11.75910 -11.48140 -11.36715 -11.01387 -10.88721 -10.78077 -10.73216 -10.63267 -10.59745 -10.43785 -10.03323 -9.94679 -9.68254 -9.47368 -9.09947 -8.44132 -7.19523 -5.99877 -4.01724 3.35487 3.39076 3.42409 4.45608 4.69217 4.87083 4.91153 5.13458 5.22815 5.26013 5.30991 5.35833 5.36358 5.40775 5.62294 5.81588 5.85639 5.91144 5.97944 6.01586 6.08926 6.12599 6.21373 6.24914 6.26936 6.32377 6.42739 6.45845 6.53137 6.63310 6.81636 6.89194 7.31714 7.47944 7.82606 8.18030 8.46683 8.68318 9.07793 9.63053 11.11270 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043263 B = 0.005238 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.045227 B = 5344.619946 C = 5611.064423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.688 5.688 11 C 0.063 3.937 12 C -0.089 4.089 13 C -0.100 4.100 14 C -0.142 4.142 15 C -0.116 4.116 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.123 4.123 20 H 0.261 0.739 21 H 0.026 0.974 22 H -0.016 1.016 23 H 0.326 0.674 24 H 0.060 0.940 25 H 0.014 0.986 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.804 -17.006 0.698 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.318 5.318 11 C -0.067 4.067 12 C -0.108 4.108 13 C -0.137 4.137 14 C -0.178 4.178 15 C -0.154 4.154 16 C -0.166 4.166 17 C -0.163 4.163 18 C -0.156 4.156 19 C -0.161 4.161 20 H 0.071 0.929 21 H 0.044 0.956 22 H 0.002 0.998 23 H 0.142 0.858 24 H 0.079 0.921 25 H 0.032 0.968 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.716 -16.858 0.002 18.147 hybrid contribution -0.008 0.974 0.917 1.338 sum 6.708 -15.884 0.920 17.267 Atomic orbital electron populations 1.69962 1.06094 1.26820 1.50995 1.24994 0.94867 0.99342 0.95405 0.86548 0.79418 0.82712 0.78626 1.20163 1.21357 1.20299 1.21170 0.93452 0.90331 1.50233 0.92065 1.19531 0.90650 0.87521 0.95589 1.60639 1.21139 1.01373 1.48656 1.22075 0.95043 0.90310 0.99288 1.21467 0.97003 0.93459 0.98837 1.21502 0.99060 0.96243 0.96913 1.22135 0.97598 0.99612 0.98493 1.21595 0.97516 1.01202 0.95073 1.21868 0.98125 0.99551 0.97099 1.21803 0.95114 0.97784 1.01550 1.21703 0.96306 0.99239 0.98346 1.21877 0.99428 0.96273 0.98528 0.92909 0.95579 0.99835 0.85836 0.92116 0.96784 0.90722 0.91158 0.92452 0.92956 0.90118 0.93002 0.91956 0.92915 0.90562 0.91062 0.92942 0.92697 0.91950 0.91148 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.85 9.32 -34.44 -0.32 -15.17 16 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 9 C 0.19 5.23 5.44 -4.97 -0.03 5.20 16 10 N -0.69 -15.02 6.21 -115.06 -0.71 -15.74 16 11 C 0.06 1.14 4.75 -3.83 -0.02 1.12 16 12 C -0.09 -1.27 1.89 -90.64 -0.17 -1.44 16 13 C -0.10 -1.40 4.80 -26.73 -0.13 -1.53 16 14 C -0.14 -1.61 5.33 -26.72 -0.14 -1.76 16 15 C -0.12 -1.25 5.71 -26.73 -0.15 -1.41 16 16 C -0.13 -1.36 5.48 -26.74 -0.15 -1.51 16 17 C -0.13 -1.23 5.47 -26.74 -0.15 -1.37 16 18 C -0.12 -1.25 5.59 -26.73 -0.15 -1.40 16 19 C -0.12 -1.48 5.13 -26.74 -0.14 -1.62 16 20 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H -0.02 -0.46 8.14 -51.93 -0.42 -0.89 16 23 H 0.33 6.83 8.72 -39.29 -0.34 6.49 16 24 H 0.06 1.14 8.06 -51.93 -0.42 0.73 16 25 H 0.01 0.26 8.11 -51.93 -0.42 -0.16 16 26 H 0.07 1.07 4.69 -51.93 -0.24 0.82 16 27 H 0.07 1.11 7.82 -51.93 -0.41 0.70 16 28 H 0.06 0.86 7.98 -51.93 -0.41 0.45 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.86 2.83 -51.93 -0.15 0.72 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.72 7.82 -51.93 -0.41 0.31 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.90 4.69 -51.93 -0.24 0.66 16 35 H 0.07 0.68 5.47 -51.93 -0.28 0.40 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.70 7.47 -51.93 -0.39 0.31 16 39 H 0.07 0.80 5.47 -51.93 -0.28 0.51 16 40 H 0.06 0.73 7.59 -51.93 -0.39 0.34 16 LS Contribution 294.58 15.07 4.44 4.44 Total: -1.00 -29.60 294.58 -9.10 -38.69 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.90 Total: 1.62 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.64 Total: -19.37 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.02 Total: -42.37 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.60 -9.10 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300746236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.221 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds