Wall clock time and date at job start Mon Mar 30 2020 03:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00084 * 2 1 4 4 H 1.48500 * 109.47020 * 239.99880 * 3 2 1 5 5 H 1.48499 * 109.47317 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46797 * 120.00404 * 3 2 1 7 7 C 1.37875 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00165 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47301 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00239 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47171 * 179.97438 * 11 10 9 13 13 C 1.52984 * 109.46681 * 295.03853 * 12 11 10 14 14 C 1.53014 * 109.46275 * 195.97918 * 13 12 11 15 15 C 1.53008 * 109.47064 * 284.04776 * 14 13 12 16 16 C 1.52995 * 109.45920 * 75.93723 * 15 14 13 17 17 C 1.52989 * 109.50569 * 44.01236 * 16 15 14 18 18 C 1.52997 * 109.48402 * 247.06623 * 17 16 15 19 19 C 1.52983 * 109.46061 * 174.99898 * 12 11 10 20 20 H 0.97009 * 119.99710 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47005 * 59.99578 * 9 7 2 22 22 H 1.09004 * 109.46504 * 300.00414 * 9 7 2 23 23 H 1.00899 * 110.99945 * 56.04782 * 10 9 7 24 24 H 1.09004 * 109.46949 * 59.99372 * 11 10 9 25 25 H 1.08998 * 109.46562 * 299.99904 * 11 10 9 26 26 H 1.09003 * 109.46477 * 55.01875 * 12 11 10 27 27 H 1.09002 * 109.47190 * 75.98001 * 13 12 11 28 28 H 1.09006 * 109.47488 * 315.97649 * 13 12 11 29 29 H 1.09002 * 109.47344 * 164.04472 * 14 13 12 30 30 H 1.09001 * 109.46856 * 44.04531 * 14 13 12 31 31 H 1.09003 * 109.47329 * 195.93883 * 15 14 13 32 32 H 1.09002 * 109.47320 * 315.93643 * 15 14 13 33 33 H 1.09001 * 109.46518 * 164.02095 * 16 15 14 34 34 H 1.08996 * 109.46642 * 283.99928 * 16 15 14 35 35 H 1.08998 * 109.46320 * 7.07013 * 17 16 15 36 36 H 1.08993 * 109.46434 * 127.05508 * 17 16 15 37 37 H 1.09004 * 109.47247 * 195.95270 * 18 17 16 38 38 H 1.09005 * 109.47840 * 315.95919 * 18 17 16 39 39 H 1.08996 * 109.47395 * 112.94891 * 19 12 11 40 40 H 1.09003 * 109.47689 * 352.94669 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5052 -4.9071 -0.0011 12 6 2.5301 -6.0431 -0.0018 13 6 3.3248 -6.0120 -1.3086 14 6 4.0532 -7.3448 -1.4942 15 6 5.2700 -7.3943 -0.5678 16 6 4.8084 -7.6618 0.8661 17 6 3.7493 -8.7658 0.8642 18 6 2.4006 -8.1798 1.2865 19 6 1.8046 -7.3841 0.1233 20 1 -0.4850 0.8402 0.0004 21 1 0.6239 -2.5567 -0.8902 22 1 0.6246 -2.5570 0.8897 23 1 2.8403 -3.5488 0.7808 24 1 0.8805 -4.9812 -0.8914 25 1 0.8800 -4.9817 0.8886 26 1 3.2109 -5.9185 0.8403 27 1 4.0531 -5.2019 -1.2718 28 1 2.6437 -5.8507 -2.1444 29 1 4.3807 -7.4389 -2.5296 30 1 3.3777 -8.1649 -1.2508 31 1 5.9391 -8.1925 -0.8892 32 1 5.7964 -6.4406 -0.6083 33 1 5.6601 -7.9766 1.4691 34 1 4.3827 -6.7507 1.2866 35 1 3.6650 -9.1865 -0.1377 36 1 4.0402 -9.5493 1.5639 37 1 1.7223 -8.9884 1.5590 38 1 2.5428 -7.5205 2.1429 39 1 1.9228 -7.9489 -0.8014 40 1 0.7449 -7.2082 0.3087 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300746236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:30 Heat of formation + Delta-G solvation = -41.058052 kcal Electronic energy + Delta-G solvation = -16137.891075 eV Core-core repulsion = 13757.686030 eV Total energy + Delta-G solvation = -2380.205044 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45840 -37.12673 -34.92336 -33.72104 -33.32485 -29.58136 -27.46475 -26.69909 -24.62119 -23.36001 -22.60091 -20.90015 -20.17026 -18.56687 -16.92414 -16.65619 -16.25113 -15.80111 -15.37263 -14.91482 -14.76939 -14.60061 -14.19523 -13.95997 -13.62124 -13.25675 -13.03269 -12.76656 -12.63316 -12.51483 -12.21976 -12.00046 -11.75464 -11.68575 -11.56809 -11.51816 -11.22066 -11.07652 -10.72040 -10.65719 -10.49481 -9.08963 -8.23555 -6.35438 1.40192 1.44297 1.52395 2.39402 3.09418 3.57837 3.77783 3.91854 4.04088 4.20789 4.28886 4.33822 4.37233 4.44302 4.48495 4.68333 4.76981 4.83654 4.93720 5.05637 5.07222 5.09010 5.12609 5.16748 5.22341 5.25673 5.28277 5.33434 5.43940 5.49013 5.58412 5.59285 5.62694 5.74653 5.77798 6.01296 6.45324 6.72406 6.88675 7.35813 8.88075 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043263 B = 0.005238 C = 0.004989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.045227 B = 5344.619946 C = 5611.064423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.208 3.792 10 N -0.684 5.684 11 C 0.063 3.937 12 C -0.078 4.078 13 C -0.098 4.098 14 C -0.135 4.135 15 C -0.115 4.115 16 C -0.130 4.130 17 C -0.122 4.122 18 C -0.116 4.116 19 C -0.120 4.120 20 H 0.265 0.735 21 H -0.004 1.004 22 H -0.043 1.043 23 H 0.332 0.668 24 H 0.049 0.951 25 H 0.010 0.990 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 -17.998 0.883 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.080 3.920 10 N -0.314 5.314 11 C -0.067 4.067 12 C -0.097 4.097 13 C -0.135 4.135 14 C -0.171 4.171 15 C -0.153 4.153 16 C -0.167 4.167 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.157 4.157 20 H 0.074 0.926 21 H 0.014 0.986 22 H -0.026 1.026 23 H 0.149 0.851 24 H 0.068 0.932 25 H 0.028 0.972 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.213 -17.877 0.192 19.674 hybrid contribution -0.507 1.248 0.854 1.595 sum 7.705 -16.629 1.045 18.357 Atomic orbital electron populations 1.70098 1.07907 1.28107 1.51464 1.25994 0.95805 1.03515 0.94472 0.85348 0.78081 0.77427 0.79201 1.19286 1.20675 1.19004 1.21525 0.93801 0.91424 1.50768 0.91713 1.19189 0.90699 0.89247 0.92831 1.60526 1.20308 1.01579 1.48959 1.22189 0.96020 0.89956 0.98487 1.21404 0.96012 0.93065 0.99196 1.21455 0.98453 0.97459 0.96156 1.22088 0.97833 0.97959 0.99239 1.21586 0.97302 1.01261 0.95145 1.21863 0.98770 0.99183 0.96902 1.21783 0.94080 0.97683 1.02332 1.21682 0.97154 0.99293 0.97207 1.21851 0.98824 0.95066 0.99985 0.92583 0.98592 1.02559 0.85098 0.93206 0.97216 0.90386 0.93242 0.93856 0.92258 0.88873 0.91301 0.93123 0.91905 0.92199 0.90372 0.91517 0.91219 0.92748 0.89931 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.93 13.29 21.45 0.28 -57.64 16 2 C 0.00 0.01 5.46 84.65 0.46 0.48 16 3 Si 0.98 45.06 29.54 68.60 2.03 47.09 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.54 -31.61 9.32 25.60 0.24 -31.37 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.21 11.69 5.44 85.56 0.47 12.16 16 10 N -0.68 -30.74 6.21 -517.93 -3.22 -33.96 16 11 C 0.06 2.35 4.75 86.30 0.41 2.76 16 12 C -0.08 -2.20 1.89 -10.81 -0.02 -2.22 16 13 C -0.10 -2.71 4.80 30.59 0.15 -2.57 16 14 C -0.13 -2.81 5.33 30.60 0.16 -2.65 16 15 C -0.12 -2.25 5.71 30.60 0.17 -2.07 16 16 C -0.13 -2.45 5.48 30.59 0.17 -2.28 16 17 C -0.12 -2.01 5.47 30.59 0.17 -1.85 16 18 C -0.12 -2.19 5.59 30.60 0.17 -2.02 16 19 C -0.12 -2.70 5.13 30.59 0.16 -2.54 16 20 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 21 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 22 H -0.04 -2.61 8.14 -2.39 -0.02 -2.63 16 23 H 0.33 14.21 8.72 -89.69 -0.78 13.43 16 24 H 0.05 1.95 8.06 -2.38 -0.02 1.93 16 25 H 0.01 0.37 8.11 -2.39 -0.02 0.35 16 26 H 0.08 2.19 4.69 -2.39 -0.01 2.18 16 27 H 0.05 1.57 7.82 -2.39 -0.02 1.55 16 28 H 0.04 1.31 7.98 -2.38 -0.02 1.29 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.73 2.83 -2.39 -0.01 1.73 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 1.10 7.82 -2.39 -0.02 1.09 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.33 4.69 -2.39 -0.01 1.32 16 35 H 0.08 1.21 5.47 -2.39 -0.01 1.20 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.05 1.13 7.47 -2.38 -0.02 1.11 16 39 H 0.08 1.68 5.47 -2.39 -0.01 1.67 16 40 H 0.05 1.26 7.59 -2.39 -0.02 1.24 16 Total: -1.00 -64.05 294.58 2.02 -62.03 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.22 Total: 16.67 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 2.70 Total: -34.18 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -2.93 Total: -91.61 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.05 2.02 -62.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300746236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.968 kcal (2) G-P(sol) polarization free energy of solvation -64.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds