Wall clock time and date at job start Mon Mar 30 2020 02:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99836 * 2 1 4 4 H 1.48501 * 109.46945 * 266.42531 * 3 2 1 5 5 H 1.48500 * 109.47438 * 26.42047 * 3 2 1 6 6 H 1.48496 * 109.47310 * 146.42572 * 3 2 1 7 7 C 1.38810 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00099 * 162.94659 * 7 2 1 9 9 N 1.36936 * 120.00166 * 342.94291 * 7 2 1 10 10 C 1.47085 * 120.87967 * 333.89719 * 9 7 2 11 11 C 1.53244 * 108.51701 * 231.15911 * 10 9 7 12 12 N 1.46900 * 109.34150 * 306.17008 * 11 10 9 13 13 C 1.46898 * 110.99650 * 187.25470 * 12 11 10 14 14 H 1.08991 * 110.63284 * 294.95443 * 13 12 11 15 15 C 1.55140 * 110.70771 * 58.25551 * 13 12 11 16 16 C 1.54910 * 101.65129 * 154.03081 * 15 13 12 17 17 N 1.47848 * 104.79833 * 322.93006 * 16 15 13 18 18 C 1.47435 * 108.56642 * 24.09321 * 17 16 15 19 19 C 1.46896 * 111.26894 * 63.10549 * 12 11 10 20 20 C 1.47079 * 120.88411 * 153.87030 * 9 7 2 21 21 H 0.96999 * 120.00390 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.63067 * 111.44869 * 10 9 7 23 23 H 1.08995 * 109.62666 * 350.86492 * 10 9 7 24 24 H 1.09003 * 109.49009 * 186.20539 * 11 10 9 25 25 H 1.09007 * 109.49178 * 66.13027 * 11 10 9 26 26 H 1.08989 * 110.99204 * 272.12579 * 15 13 12 27 27 H 1.09004 * 110.98698 * 35.93982 * 15 13 12 28 28 H 1.09001 * 110.37030 * 204.09754 * 16 15 13 29 29 H 1.08997 * 110.46797 * 81.81059 * 16 15 13 30 30 H 1.00895 * 110.99687 * 146.36873 * 17 16 15 31 31 H 1.08996 * 109.89164 * 239.60421 * 18 17 16 32 32 H 1.08997 * 109.88707 * 118.41400 * 18 17 16 33 33 H 1.08997 * 109.49434 * 56.85722 * 19 12 11 34 34 H 1.08995 * 109.49019 * 176.91149 * 19 12 11 35 35 H 1.08999 * 109.62807 * 9.12690 * 20 9 7 36 36 H 1.09006 * 109.62797 * 248.55098 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5732 2.0028 -1.3974 5 1 1.4118 2.6734 0.6230 6 1 3.5079 1.4633 0.7742 7 6 2.0103 -1.2021 0.0005 8 1 3.0547 -1.2228 -0.2738 9 7 1.3709 -2.3618 0.3489 10 6 0.1993 -2.3402 1.2379 11 6 0.4299 -3.3453 2.3715 12 7 0.7508 -4.6594 1.7987 13 6 0.8101 -5.6892 2.8447 14 1 1.6331 -5.4922 3.5314 15 6 -0.5379 -5.7740 3.6079 16 6 -0.5203 -7.2386 4.1123 17 7 0.1050 -8.0081 3.0155 18 6 0.9449 -7.0940 2.2201 19 6 2.0031 -4.6150 1.0320 20 6 1.8370 -3.6621 -0.1564 21 1 -0.4851 0.8400 -0.0004 22 1 -0.6919 -2.6199 0.6761 23 1 0.0743 -1.3408 1.6545 24 1 -0.4727 -3.4232 2.9776 25 1 1.2585 -3.0076 2.9940 26 1 -0.5586 -5.0737 4.4429 27 1 -1.3787 -5.6025 2.9357 28 1 -1.5362 -7.5904 4.2915 29 1 0.0751 -7.3215 5.0215 30 1 0.6494 -8.7765 3.3777 31 1 0.5975 -7.0755 1.1872 32 1 1.9848 -7.4183 2.2581 33 1 2.8097 -4.2598 1.6732 34 1 2.2416 -5.6140 0.6671 35 1 2.7946 -3.5366 -0.6617 36 1 1.1032 -4.0689 -0.8523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306212148.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:32 Heat of formation + Delta-G solvation = 15.718994 kcal Electronic energy + Delta-G solvation = -16286.068458 eV Core-core repulsion = 13804.785108 eV Total energy + Delta-G solvation = -2481.283350 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43623 -38.37910 -35.68788 -33.20993 -31.83543 -30.49550 -29.48861 -27.31480 -24.67326 -24.38474 -21.86824 -21.42919 -20.79046 -18.82348 -17.67912 -17.29924 -16.64611 -15.65320 -15.44002 -15.39208 -15.20773 -14.78950 -14.60260 -13.87336 -13.57477 -13.41688 -13.22815 -12.89800 -12.64620 -12.54623 -12.39273 -12.16608 -12.02693 -11.84001 -11.78993 -11.43401 -11.37203 -10.59572 -9.43109 -9.24242 -8.70602 -7.88905 -5.33458 1.45918 1.47106 1.56879 2.49863 2.88245 3.26442 3.35923 3.61518 3.66630 3.94010 4.13107 4.24054 4.31344 4.39986 4.45614 4.55383 4.57722 4.65558 4.69043 4.86363 4.91827 4.97528 5.05664 5.09473 5.18745 5.22522 5.35099 5.59202 5.65996 5.87854 6.15605 6.28783 6.35855 6.53418 7.11529 7.82122 8.36610 9.18188 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.059875 B = 0.006456 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.530880 B = 4336.174176 C = 4572.411819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.615 5.615 10 C 0.186 3.814 11 C 0.053 3.947 12 N -0.530 5.530 13 C 0.058 3.942 14 H 0.042 0.958 15 C -0.122 4.122 16 C 0.053 3.947 17 N -0.690 5.690 18 C 0.062 3.938 19 C 0.055 3.945 20 C 0.144 3.856 21 H 0.251 0.749 22 H -0.003 1.003 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.016 0.984 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.350 0.650 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 -13.351 8.615 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.339 5.339 10 C 0.060 3.940 11 C -0.076 4.076 12 N -0.255 5.255 13 C -0.051 4.051 14 H 0.060 0.940 15 C -0.160 4.160 16 C -0.076 4.076 17 N -0.321 5.321 18 C -0.067 4.067 19 C -0.074 4.074 20 C 0.018 3.982 21 H 0.060 0.940 22 H 0.015 0.985 23 H 0.077 0.923 24 H 0.099 0.901 25 H 0.034 0.966 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.167 0.833 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.110 -13.331 7.845 15.508 hybrid contribution 1.553 1.579 0.819 2.361 sum 2.664 -11.752 8.663 14.841 Atomic orbital electron populations 1.70193 1.06714 1.25946 1.55441 1.25807 0.96086 1.01551 1.01265 0.85251 0.77875 0.79286 0.77793 1.20886 1.21721 1.19700 1.19542 0.92964 0.86029 1.41090 0.91425 1.44422 1.33754 1.02109 1.53640 1.20626 0.87700 0.96426 0.89258 1.22560 0.99230 0.89155 0.96646 1.61993 1.33737 1.05242 1.24546 1.22959 0.97509 0.92511 0.92159 0.94039 1.22754 0.96658 0.97259 0.99329 1.22793 1.00653 0.91515 0.92678 1.61813 1.35147 1.11259 1.23845 1.22514 0.96066 0.89576 0.98590 1.22468 0.89483 0.99899 0.95562 1.21128 0.97440 0.85544 0.94067 0.94005 0.98514 0.92330 0.90119 0.96576 0.90437 0.91290 0.89491 0.92388 0.83348 0.91216 0.91870 0.96059 0.88844 0.92033 0.96657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.60 11.12 21.65 0.24 -56.36 16 2 C -0.05 -2.96 4.94 84.86 0.42 -2.54 16 3 Si 0.97 45.40 29.59 68.60 2.03 47.43 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.27 -15.07 9.64 84.03 0.81 -14.26 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 9 N -0.62 -32.38 3.04 -698.12 -2.12 -34.50 16 10 C 0.19 9.45 5.42 86.35 0.47 9.91 16 11 C 0.05 2.13 5.45 86.38 0.47 2.60 16 12 N -0.53 -18.72 4.45 -863.12 -3.84 -22.57 16 13 C 0.06 1.60 2.65 46.10 0.12 1.72 16 14 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 15 C -0.12 -2.99 5.25 31.98 0.17 -2.82 16 16 C 0.05 1.01 7.57 86.77 0.66 1.67 16 17 N -0.69 -14.37 7.39 -504.43 -3.73 -18.10 16 18 C 0.06 1.48 6.08 86.65 0.53 2.01 16 19 C 0.06 1.95 5.48 86.38 0.47 2.42 16 20 C 0.14 6.26 6.69 86.35 0.58 6.84 16 21 H 0.25 14.61 8.31 -92.71 -0.77 13.83 16 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.06 3.31 6.08 -2.39 -0.01 3.29 16 24 H 0.08 2.89 6.71 -2.39 -0.02 2.87 16 25 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.08 1.76 7.93 -2.39 -0.02 1.74 16 27 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.35 5.53 8.91 -89.70 -0.80 4.73 16 31 H 0.07 1.95 7.85 -2.39 -0.02 1.93 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 2.72 6.95 -2.39 -0.02 2.71 16 35 H 0.06 2.54 7.95 -2.39 -0.02 2.52 16 36 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -64.73 277.92 -2.48 -67.20 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.25 Total: 9.35 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 4.69 Total: 7.54 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -9.45 Total: -131.53 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -64.73 -2.48 -67.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306212148.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.924 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds