Wall clock time and date at job start Mon Mar 30 2020 02:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.37490 * 119.99912 * 179.97438 * 2 1 3 13 13 N 1.29261 * 118.84714 * 180.02562 * 12 2 1 14 14 C 1.45837 * 123.74705 * 180.96542 * 13 12 2 15 15 C 1.53027 * 110.59634 * 339.22990 * 14 13 12 16 16 C 1.52994 * 109.64237 * 169.09458 * 15 14 13 17 17 C 1.53003 * 109.63885 * 289.51370 * 15 14 13 18 18 C 1.53616 * 108.44280 * 49.40437 * 15 14 13 19 19 N 1.37467 * 118.84976 * 359.73604 * 12 2 1 20 20 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 21 21 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 22 22 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 23 23 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 24 24 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.25376 * 99.51798 * 14 13 12 27 27 H 1.09003 * 109.25007 * 218.94042 * 14 13 12 28 28 H 1.09002 * 109.47452 * 60.00173 * 16 15 14 29 29 H 1.09003 * 109.46629 * 179.97438 * 16 15 14 30 30 H 1.08994 * 109.47195 * 299.99590 * 16 15 14 31 31 H 1.09000 * 109.47591 * 59.99560 * 17 15 14 32 32 H 1.09000 * 109.47170 * 180.02562 * 17 15 14 33 33 H 1.09003 * 109.47011 * 299.99711 * 17 15 14 34 34 H 1.08997 * 109.87067 * 60.06472 * 18 15 14 35 35 H 1.08996 * 109.87356 * 181.05176 * 18 15 14 36 36 H 0.97009 * 120.64343 * 347.07875 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 4.2411 2.3811 4.1336 10 1 4.1812 4.7025 3.4339 11 1 2.1414 3.5943 4.1343 12 6 2.1524 -1.1907 0.0005 13 7 3.4447 -1.1647 0.0010 14 6 4.2791 -2.3607 -0.0188 15 6 3.4886 -3.5767 0.4690 16 6 4.2831 -4.8534 0.1871 17 6 3.2303 -3.4530 1.9720 18 6 2.1521 -3.6227 -0.2870 19 7 1.4413 -2.3672 0.0066 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6084 2.0284 -0.5138 24 1 3.1499 1.1384 -0.5137 25 1 4.0310 4.4434 0.8504 26 1 4.6244 -2.5412 -1.0368 27 1 5.1412 -2.2082 0.6306 28 1 5.2386 -4.8097 0.7098 29 1 3.7177 -5.7176 0.5360 30 1 4.4591 -4.9426 -0.8849 31 1 2.6579 -2.5466 2.1689 32 1 2.6676 -4.3206 2.3165 33 1 4.1819 -3.4040 2.5013 34 1 2.3350 -3.7081 -1.3581 35 1 1.5610 -4.4715 0.0567 36 1 0.4901 -2.3690 0.1970 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306219057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:52 Heat of formation + Delta-G solvation = 35.832959 kcal Electronic energy + Delta-G solvation = -16293.197336 eV Core-core repulsion = 13812.786193 eV Total energy + Delta-G solvation = -2480.411143 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.40132 -36.34827 -33.24809 -32.05984 -31.91345 -27.71148 -27.10052 -26.79701 -25.07115 -23.86357 -22.21058 -19.74699 -17.36600 -17.00864 -16.26549 -15.67833 -14.53096 -14.36785 -14.13358 -13.90602 -13.62478 -13.05532 -12.93064 -12.17172 -12.03882 -11.97448 -11.67710 -11.59188 -11.25777 -11.12733 -10.98625 -10.78134 -10.56518 -10.36494 -10.21813 -9.92933 -9.33931 -8.27680 -7.94802 -7.73708 -6.63965 -5.84552 -3.88502 3.40622 3.44740 3.47668 3.60649 3.86946 4.44167 4.59680 4.87481 5.03369 5.17675 5.47098 5.50672 5.57017 5.64881 5.72299 5.78420 5.97251 6.03803 6.06755 6.14800 6.20754 6.29222 6.39734 6.44960 6.61811 6.68800 7.07033 7.16718 7.62706 7.95699 8.07654 8.23862 8.48938 8.89718 9.14779 9.66398 9.77129 11.21298 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030893 B = 0.008143 C = 0.007308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.150320 B = 3437.750318 C = 3830.658294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.608 5.608 3 C 0.270 3.730 4 C -0.511 4.511 5 H 0.052 0.948 6 C 0.059 3.941 7 N -0.899 5.899 8 Si 0.893 3.107 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.280 1.280 12 C 0.633 3.367 13 N -0.654 5.654 14 C 0.106 3.894 15 C -0.120 4.120 16 C -0.134 4.134 17 C -0.128 4.128 18 C 0.146 3.854 19 N -0.783 5.783 20 H 0.035 0.965 21 H 0.043 0.957 22 H 0.071 0.929 23 H 0.022 0.978 24 H 0.052 0.948 25 H 0.260 0.740 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 -14.590 -1.402 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.330 5.330 3 C 0.150 3.850 4 C -0.551 4.551 5 H 0.070 0.930 6 C -0.142 4.142 7 N -0.539 5.539 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.206 1.206 12 C 0.272 3.728 13 N -0.395 5.395 14 C -0.026 4.026 15 C -0.122 4.122 16 C -0.193 4.193 17 C -0.185 4.185 18 C 0.021 3.979 19 N -0.431 5.431 20 H 0.054 0.946 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.424 -13.827 -1.485 14.322 hybrid contribution -0.593 -0.488 1.176 1.405 sum -4.017 -14.315 -0.309 14.872 Atomic orbital electron populations 1.21355 0.81717 1.01468 0.99565 1.46424 1.03778 1.04212 1.78585 1.19113 0.92347 0.76777 0.96747 1.21456 1.35272 1.05584 0.92760 0.92989 1.24887 0.95840 0.96611 0.96832 1.69924 1.39086 1.14421 1.30452 0.86656 0.78132 0.77672 0.85438 1.20419 1.21390 1.20597 1.18467 0.86428 0.79637 0.88308 1.71220 1.01384 1.26496 1.40389 1.21498 0.96015 0.86380 0.98688 1.21556 0.96503 0.97539 0.96620 1.21755 0.99947 0.96252 1.01300 1.21678 1.01365 1.01495 0.93978 1.21451 0.92626 0.85777 0.98085 1.45387 1.11246 1.05149 1.81323 0.94624 0.93814 0.91004 0.96001 0.93007 0.92986 0.93823 0.91599 0.92382 0.93060 0.92759 0.91942 0.93749 0.92967 0.93011 0.91139 0.77684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.76 10.34 59.84 0.62 2.37 16 2 N -0.61 -13.36 2.93 -185.01 -0.54 -13.91 16 3 C 0.27 7.22 5.14 -5.19 -0.03 7.19 16 4 C -0.51 -14.77 9.39 -34.44 -0.32 -15.10 16 5 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 8 Si 0.89 22.45 29.54 -169.99 -5.02 17.43 16 9 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.63 13.21 7.23 -321.42 -2.32 10.89 16 13 N -0.65 -14.96 9.17 -62.46 -0.57 -15.53 16 14 C 0.11 1.95 5.87 -4.39 -0.03 1.92 16 15 C -0.12 -1.72 0.79 -154.18 -0.12 -1.85 16 16 C -0.13 -1.50 8.48 37.15 0.32 -1.18 16 17 C -0.13 -1.93 8.26 37.16 0.31 -1.62 16 18 C 0.15 1.97 6.00 -3.32 -0.02 1.95 16 19 N -0.78 -12.46 4.98 -61.22 -0.30 -12.76 16 20 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.04 0.61 6.20 -51.93 -0.32 0.29 16 22 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 23 H 0.02 0.60 8.07 -51.93 -0.42 0.18 16 24 H 0.05 1.55 7.31 -51.93 -0.38 1.17 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.04 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.15 6.75 -51.93 -0.35 0.80 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.39 5.32 6.61 -40.82 -0.27 5.05 16 LS Contribution 288.66 15.07 4.35 4.35 Total: -1.00 -32.21 288.66 -8.98 -41.19 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.93 Total: -0.40 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: -1.70 Total: 6.21 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -0.68 Total: -68.78 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.21 -8.98 -41.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306219057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.023 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds