Wall clock time and date at job start Mon Mar 30 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 120.00020 * 2 1 4 4 C 1.50706 * 109.46949 * 89.99910 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72205 * 4 3 2 6 6 C 1.37879 * 119.99394 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 3 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.37490 * 119.99912 * 179.97438 * 2 1 3 13 13 N 1.29261 * 118.84714 * 180.02562 * 12 2 1 14 14 C 1.45837 * 123.74705 * 180.96542 * 13 12 2 15 15 C 1.53027 * 110.59634 * 339.22990 * 14 13 12 16 16 C 1.52994 * 109.64237 * 169.09458 * 15 14 13 17 17 C 1.53003 * 109.63885 * 289.51370 * 15 14 13 18 18 C 1.53616 * 108.44280 * 49.40437 * 15 14 13 19 19 N 1.37467 * 118.84976 * 359.73604 * 12 2 1 20 20 H 1.09001 * 109.47412 * 89.99916 * 1 2 3 21 21 H 1.09000 * 109.47567 * 210.00198 * 1 2 3 22 22 H 1.09002 * 109.47279 * 329.99646 * 1 2 3 23 23 H 1.09000 * 109.47175 * 329.99936 * 3 2 1 24 24 H 1.09001 * 109.47297 * 209.99443 * 3 2 1 25 25 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.25376 * 99.51798 * 14 13 12 27 27 H 1.09003 * 109.25007 * 218.94042 * 14 13 12 28 28 H 1.09002 * 109.47452 * 60.00173 * 16 15 14 29 29 H 1.09003 * 109.46629 * 179.97438 * 16 15 14 30 30 H 1.08994 * 109.47195 * 299.99590 * 16 15 14 31 31 H 1.09000 * 109.47591 * 59.99560 * 17 15 14 32 32 H 1.09000 * 109.47170 * 180.02562 * 17 15 14 33 33 H 1.09003 * 109.47011 * 299.99711 * 17 15 14 34 34 H 1.08997 * 109.87067 * 60.06472 * 18 15 14 35 35 H 1.08996 * 109.87356 * 181.05176 * 18 15 14 36 36 H 0.97009 * 120.64343 * 347.07875 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0938 1.0983 2.2417 6 6 3.1268 2.8775 1.6727 7 7 3.5542 3.6176 0.6731 8 14 3.4388 3.4163 3.4339 9 1 4.2411 2.3811 4.1336 10 1 4.1812 4.7025 3.4339 11 1 2.1414 3.5943 4.1343 12 6 2.1524 -1.1907 0.0005 13 7 3.4447 -1.1647 0.0010 14 6 4.2791 -2.3607 -0.0188 15 6 3.4886 -3.5767 0.4690 16 6 4.2831 -4.8534 0.1871 17 6 3.2303 -3.4530 1.9720 18 6 2.1521 -3.6227 -0.2870 19 7 1.4413 -2.3672 0.0066 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6084 2.0284 -0.5138 24 1 3.1499 1.1384 -0.5137 25 1 4.0310 4.4434 0.8504 26 1 4.6244 -2.5412 -1.0368 27 1 5.1412 -2.2082 0.6306 28 1 5.2386 -4.8097 0.7098 29 1 3.7177 -5.7176 0.5360 30 1 4.4591 -4.9426 -0.8849 31 1 2.6579 -2.5466 2.1689 32 1 2.6676 -4.3206 2.3165 33 1 4.1819 -3.4040 2.5013 34 1 2.3350 -3.7081 -1.3581 35 1 1.5610 -4.4715 0.0567 36 1 0.4901 -2.3690 0.1970 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306219057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:51 Heat of formation + Delta-G solvation = 15.116173 kcal Electronic energy + Delta-G solvation = -16294.095684 eV Core-core repulsion = 13812.786193 eV Total energy + Delta-G solvation = -2481.309491 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76550 -37.87595 -35.04949 -33.82814 -33.39325 -29.64802 -28.31153 -28.03087 -26.55044 -25.41579 -24.07301 -21.13493 -18.68295 -18.62790 -18.38000 -17.16259 -16.43642 -15.77705 -15.49508 -15.26857 -15.01130 -14.57205 -14.49932 -13.89136 -13.31052 -13.18579 -13.05897 -12.98555 -12.85133 -12.68957 -12.55222 -12.44658 -12.23913 -12.00229 -11.75685 -11.68996 -11.25584 -10.52997 -9.43994 -9.21033 -8.39835 -8.00274 -6.21151 1.38129 1.42245 1.49311 2.14554 2.29387 2.47233 3.09028 3.19476 3.74215 3.91644 4.03998 4.27980 4.44617 4.57220 4.66786 4.72295 4.76380 4.83614 4.87823 4.92381 4.94125 5.11219 5.12132 5.17120 5.23089 5.34597 5.43146 5.49427 5.77356 5.84969 6.22237 6.35330 6.48309 6.89774 7.38804 7.47628 8.17471 8.96677 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.030893 B = 0.008143 C = 0.007308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.150320 B = 3437.750318 C = 3830.658294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.623 5.623 3 C 0.290 3.710 4 C -0.522 4.522 5 H 0.044 0.956 6 C 0.006 3.994 7 N -0.932 5.932 8 Si 0.960 3.040 9 H -0.281 1.281 10 H -0.280 1.280 11 H -0.265 1.265 12 C 0.631 3.369 13 N -0.715 5.715 14 C 0.102 3.898 15 C -0.115 4.115 16 C -0.126 4.126 17 C -0.121 4.121 18 C 0.144 3.856 19 N -0.769 5.769 20 H 0.055 0.945 21 H 0.077 0.923 22 H 0.061 0.939 23 H 0.007 0.993 24 H 0.011 0.989 25 H 0.263 0.737 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.024 0.976 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.112 0.888 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 -16.838 -0.572 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.345 5.345 3 C 0.168 3.832 4 C -0.561 4.561 5 H 0.062 0.938 6 C -0.191 4.191 7 N -0.573 5.573 8 Si 0.785 3.215 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.190 1.190 12 C 0.268 3.732 13 N -0.457 5.457 14 C -0.029 4.029 15 C -0.117 4.117 16 C -0.184 4.184 17 C -0.179 4.179 18 C 0.020 3.980 19 N -0.418 5.418 20 H 0.074 0.926 21 H 0.095 0.905 22 H 0.080 0.920 23 H 0.025 0.975 24 H 0.029 0.971 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -4.689 -16.128 -0.659 16.809 hybrid contribution -0.199 0.180 0.871 0.911 sum -4.888 -15.948 0.212 16.681 Atomic orbital electron populations 1.21556 0.78724 1.02669 1.01224 1.46337 1.05609 1.03291 1.79298 1.18480 0.90873 0.78778 0.95097 1.21674 1.35337 1.05671 0.93421 0.93801 1.25746 0.95511 0.96697 1.01195 1.70049 1.39692 1.14846 1.32670 0.85593 0.78515 0.77210 0.80153 1.20662 1.20509 1.18995 1.18363 0.86486 0.80584 0.87740 1.71081 1.03202 1.29884 1.41575 1.21481 0.95550 0.87378 0.98519 1.21497 0.97042 0.97106 0.96080 1.21684 0.99668 0.95059 1.01994 1.21613 1.00822 1.00890 0.94555 1.21721 0.92350 0.85583 0.98393 1.45268 1.11794 1.04338 1.80393 0.92607 0.90450 0.91975 0.97533 0.97088 0.92787 0.93800 0.93456 0.92560 0.90415 0.91955 0.95708 0.90666 0.93697 0.92575 0.86993 0.76155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.31 10.34 127.77 1.32 4.63 16 2 N -0.62 -27.71 2.93 -739.26 -2.17 -29.88 16 3 C 0.29 16.16 5.14 85.63 0.44 16.60 16 4 C -0.52 -30.96 9.39 25.60 0.24 -30.72 16 5 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -58.03 13.29 21.45 0.28 -57.75 16 8 Si 0.96 46.57 29.54 68.60 2.03 48.60 16 9 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 C 0.63 26.34 7.23 261.00 1.89 28.23 16 13 N -0.71 -33.69 9.17 -351.54 -3.22 -36.91 16 14 C 0.10 3.80 5.87 86.51 0.51 4.31 16 15 C -0.11 -3.08 0.79 -51.97 -0.04 -3.12 16 16 C -0.13 -2.40 8.48 71.98 0.61 -1.79 16 17 C -0.12 -3.45 8.26 71.98 0.59 -2.86 16 18 C 0.14 3.39 6.00 86.45 0.52 3.91 16 19 N -0.77 -22.82 4.98 -347.59 -1.73 -24.55 16 20 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 21 H 0.08 1.97 6.20 -2.39 -0.01 1.95 16 22 H 0.06 2.13 8.07 -2.39 -0.02 2.11 16 23 H 0.01 0.39 8.07 -2.39 -0.02 0.37 16 24 H 0.01 0.70 7.31 -2.39 -0.02 0.68 16 25 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 27 H 0.05 1.87 8.11 -2.39 -0.02 1.85 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.02 0.87 6.75 -2.39 -0.02 0.86 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.40 9.72 6.61 -92.70 -0.61 9.10 16 Total: -1.00 -72.84 288.66 2.17 -70.68 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.43 Total: 9.80 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: 6.54 Total: 20.02 kcal Atomic # 7 Polarization: -142.26 SS G_CDS: -6.83 Total: -149.09 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -72.84 2.17 -70.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306219057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.793 kcal (2) G-P(sol) polarization free energy of solvation -72.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds