Wall clock time and date at job start Mon Mar 30 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47134 * 2 1 4 4 C 1.50699 * 109.47103 * 119.99952 * 2 1 3 5 5 H 1.08001 * 120.00119 * 119.99886 * 4 2 1 6 6 C 1.37879 * 120.00061 * 300.00328 * 4 2 1 7 7 N 1.31507 * 120.00309 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47186 * 90.00456 * 8 6 4 10 10 H 1.48507 * 109.47139 * 210.00358 * 8 6 4 11 11 H 1.48499 * 109.47529 * 330.00206 * 8 6 4 12 12 N 1.46903 * 109.47299 * 239.99819 * 2 1 3 13 13 C 1.46892 * 111.00042 * 104.09583 * 12 2 1 14 14 C 1.52994 * 109.47673 * 301.56354 * 13 12 2 15 15 C 1.52996 * 109.47496 * 181.55851 * 13 12 2 16 16 C 1.52998 * 109.47883 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46903 * 59.99939 * 16 15 13 18 18 C 1.53001 * 109.47174 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47272 * 300.00158 * 17 16 15 20 20 C 1.53001 * 109.47033 * 60.00343 * 19 17 16 21 21 H 1.08998 * 109.46945 * 56.62753 * 1 2 3 22 22 H 1.08998 * 109.47324 * 296.63056 * 1 2 3 23 23 H 1.08992 * 109.46970 * 176.62827 * 1 2 3 24 24 H 0.96999 * 120.00344 * 179.97438 * 7 6 4 25 25 H 1.00899 * 110.99462 * 340.14530 * 12 2 1 26 26 H 1.09005 * 109.47548 * 55.72209 * 14 13 12 27 27 H 1.09001 * 109.47742 * 175.72717 * 14 13 12 28 28 H 1.08998 * 109.47272 * 295.72648 * 14 13 12 29 29 H 1.09001 * 109.47092 * 300.01039 * 15 13 12 30 30 H 1.09006 * 109.46946 * 59.99794 * 15 13 12 31 31 H 1.09001 * 109.46787 * 300.00610 * 16 15 13 32 32 H 1.08997 * 109.47430 * 180.02562 * 16 15 13 33 33 H 1.09003 * 109.47322 * 60.00505 * 17 16 15 34 34 H 1.09004 * 109.46906 * 180.02562 * 18 17 16 35 35 H 1.08997 * 109.46916 * 300.00150 * 18 17 16 36 36 H 1.09001 * 109.47030 * 60.00357 * 18 17 16 37 37 H 1.08991 * 109.47515 * 300.00131 * 19 17 16 38 38 H 1.09004 * 109.47366 * 179.97438 * 19 17 16 39 39 H 1.09003 * 109.47607 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47653 * 59.99489 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2798 2.6540 9 1 -0.8021 0.8745 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0198 -0.6925 -1.1994 13 6 2.5101 0.2668 -2.1979 14 6 1.3838 1.2310 -2.5751 15 6 2.9747 -0.4877 -3.4452 16 6 3.4860 0.5114 -4.4849 17 6 4.6590 1.3006 -3.9000 18 6 5.1700 2.3002 -4.9396 19 6 4.1945 2.0553 -2.6528 20 6 3.6832 1.0561 -1.6130 21 1 -0.3633 0.5653 -0.8582 22 1 -0.3634 0.4606 0.9186 23 1 -0.3633 -1.0258 -0.0604 24 1 1.9039 -0.5274 4.4375 25 1 1.3050 -1.2877 -1.5904 26 1 1.0014 1.7130 -1.6753 27 1 1.7676 1.9889 -3.2581 28 1 0.5796 0.6782 -3.0607 29 1 3.7771 -1.1747 -3.1764 30 1 2.1391 -1.0504 -3.8616 31 1 2.6838 1.1986 -4.7537 32 1 3.8165 -0.0262 -5.3737 33 1 5.4613 0.6134 -3.6312 34 1 6.0060 2.8622 -4.5230 35 1 5.5008 1.7629 -5.8283 36 1 4.3676 2.9874 -5.2080 37 1 3.3923 2.7425 -2.9215 38 1 5.0303 2.6173 -2.2358 39 1 3.3527 1.5937 -0.7242 40 1 4.4854 0.3689 -1.3442 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307751732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:47 Heat of formation + Delta-G solvation = -16.891216 kcal Electronic energy + Delta-G solvation = -16873.352885 eV Core-core repulsion = 14494.195793 eV Total energy + Delta-G solvation = -2379.157092 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.53505 -35.94488 -33.00081 -31.27476 -30.51929 -28.39364 -27.46621 -24.94464 -24.38396 -22.64381 -20.70252 -19.75639 -18.05685 -16.77484 -15.38981 -14.87561 -14.55260 -14.24381 -13.96851 -13.64765 -13.05649 -12.96650 -12.76969 -12.27179 -12.26324 -12.01186 -11.74354 -11.48832 -11.37796 -11.00855 -10.91770 -10.76061 -10.55226 -10.44876 -10.13690 -10.08779 -9.88964 -9.51720 -9.29584 -9.08226 -8.48058 -7.29413 -5.97799 -3.93103 3.27950 3.37483 3.40637 4.45133 4.75936 4.87036 4.97037 5.23160 5.30362 5.34786 5.46581 5.62364 5.67515 5.70278 5.74116 5.81762 5.85331 5.98054 6.03050 6.11401 6.14134 6.21766 6.23922 6.34381 6.35246 6.45947 6.48277 6.53801 6.57241 6.66150 6.76167 6.93425 6.97472 7.18861 7.83552 8.04835 8.43776 8.81133 9.16570 9.66041 11.16152 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040085 B = 0.007628 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.347710 B = 3670.043658 C = 3755.194075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.180 3.820 3 H 0.034 0.966 4 C -0.489 4.489 5 H 0.081 0.919 6 C 0.064 3.936 7 N -0.904 5.904 8 Si 0.883 3.117 9 H -0.282 1.282 10 H -0.298 1.298 11 H -0.271 1.271 12 N -0.664 5.664 13 C 0.116 3.884 14 C -0.184 4.184 15 C -0.105 4.105 16 C -0.111 4.111 17 C -0.092 4.092 18 C -0.146 4.146 19 C -0.115 4.115 20 C -0.104 4.104 21 H 0.029 0.971 22 H 0.044 0.956 23 H 0.053 0.947 24 H 0.261 0.739 25 H 0.326 0.674 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 5.739 -15.658 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.071 3.929 3 H 0.052 0.948 4 C -0.528 4.528 5 H 0.099 0.901 6 C -0.136 4.136 7 N -0.544 5.544 8 Si 0.714 3.286 9 H -0.209 1.209 10 H -0.226 1.226 11 H -0.196 1.196 12 N -0.293 5.293 13 C 0.024 3.976 14 C -0.243 4.243 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.111 4.111 18 C -0.203 4.203 19 C -0.153 4.153 20 C -0.142 4.142 21 H 0.048 0.952 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.297 5.607 -15.179 16.344 hybrid contribution -1.650 1.198 0.004 2.039 sum 0.647 6.804 -15.176 16.644 Atomic orbital electron populations 1.22906 1.01228 1.00723 0.99067 1.19701 0.88660 0.94953 0.89550 0.94816 1.21088 1.30569 1.13421 0.87700 0.90107 1.24960 0.96141 0.96537 0.96005 1.69884 1.46277 1.40438 0.97754 0.86948 0.80688 0.84187 0.76776 1.20904 1.22556 1.19589 1.60732 1.41948 1.20920 1.05650 1.20840 0.93824 0.91429 0.91484 1.22802 0.99321 1.00584 1.01615 1.21535 1.00735 0.97527 0.94477 1.21598 0.97663 0.97978 0.97680 1.21144 0.97747 0.96994 0.95177 1.21836 1.00703 0.99108 0.98687 1.21680 1.00237 0.98046 0.95339 1.21569 0.97739 0.97433 0.97451 0.95196 0.93778 0.92775 0.92859 0.85694 0.92201 0.92569 0.93491 0.91290 0.92694 0.92122 0.92566 0.91235 0.92948 0.93092 0.93030 0.92204 0.92395 0.91306 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 8.30 37.16 0.31 -3.62 16 2 C 0.18 4.20 1.28 -68.86 -0.09 4.11 16 3 H 0.03 0.82 3.97 -51.93 -0.21 0.62 16 4 C -0.49 -13.91 9.42 -34.44 -0.32 -14.23 16 5 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 6 C 0.06 1.87 5.45 -17.82 -0.10 1.77 16 7 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 8 Si 0.88 22.25 24.40 -169.99 -4.15 18.10 16 9 H -0.28 -6.95 6.84 56.52 0.39 -6.56 16 10 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 11 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 12 N -0.66 -13.40 5.94 -94.25 -0.56 -13.96 16 13 C 0.12 1.93 0.69 -131.61 -0.09 1.84 16 14 C -0.18 -2.86 6.85 37.15 0.25 -2.61 16 15 C -0.10 -1.48 4.98 -26.73 -0.13 -1.61 16 16 C -0.11 -1.32 4.93 -26.73 -0.13 -1.45 16 17 C -0.09 -1.10 2.72 -90.62 -0.25 -1.34 16 18 C -0.15 -1.45 9.19 37.16 0.34 -1.11 16 19 C -0.12 -1.56 4.93 -26.73 -0.13 -1.70 16 20 C -0.10 -1.79 4.63 -26.73 -0.12 -1.91 16 21 H 0.03 0.56 6.30 -51.93 -0.33 0.23 16 22 H 0.04 1.02 3.22 -51.93 -0.17 0.85 16 23 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.33 6.16 8.15 -39.29 -0.32 5.83 16 26 H 0.06 1.04 5.53 -51.93 -0.29 0.76 16 27 H 0.06 0.77 4.82 -51.93 -0.25 0.52 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 6.53 -51.93 -0.34 0.37 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.79 6.34 -51.93 -0.33 0.46 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.35 6.19 -51.93 -0.32 1.03 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 285.06 15.07 4.30 4.30 Total: -1.00 -29.71 285.06 -6.90 -36.61 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -6.80 Total: 4.16 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -0.46 Total: -21.86 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.21 Total: -41.30 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.15 Total: 18.10 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.71 -6.90 -36.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.720 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds