Wall clock time and date at job start Mon Mar 30 2020 03:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.47134 * 2 1 4 4 C 1.50699 * 109.47103 * 119.99952 * 2 1 3 5 5 H 1.08001 * 120.00119 * 119.99886 * 4 2 1 6 6 C 1.37879 * 120.00061 * 300.00328 * 4 2 1 7 7 N 1.31507 * 120.00309 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99703 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.47186 * 90.00456 * 8 6 4 10 10 H 1.48507 * 109.47139 * 210.00358 * 8 6 4 11 11 H 1.48499 * 109.47529 * 330.00206 * 8 6 4 12 12 N 1.46903 * 109.47299 * 239.99819 * 2 1 3 13 13 C 1.46892 * 111.00042 * 104.09583 * 12 2 1 14 14 C 1.52994 * 109.47673 * 301.56354 * 13 12 2 15 15 C 1.52996 * 109.47496 * 181.55851 * 13 12 2 16 16 C 1.52998 * 109.47883 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46903 * 59.99939 * 16 15 13 18 18 C 1.53001 * 109.47174 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47272 * 300.00158 * 17 16 15 20 20 C 1.53001 * 109.47033 * 60.00343 * 19 17 16 21 21 H 1.08998 * 109.46945 * 56.62753 * 1 2 3 22 22 H 1.08998 * 109.47324 * 296.63056 * 1 2 3 23 23 H 1.08992 * 109.46970 * 176.62827 * 1 2 3 24 24 H 0.96999 * 120.00344 * 179.97438 * 7 6 4 25 25 H 1.00899 * 110.99462 * 340.14530 * 12 2 1 26 26 H 1.09005 * 109.47548 * 55.72209 * 14 13 12 27 27 H 1.09001 * 109.47742 * 175.72717 * 14 13 12 28 28 H 1.08998 * 109.47272 * 295.72648 * 14 13 12 29 29 H 1.09001 * 109.47092 * 300.01039 * 15 13 12 30 30 H 1.09006 * 109.46946 * 59.99794 * 15 13 12 31 31 H 1.09001 * 109.46787 * 300.00610 * 16 15 13 32 32 H 1.08997 * 109.47430 * 180.02562 * 16 15 13 33 33 H 1.09003 * 109.47322 * 60.00505 * 17 16 15 34 34 H 1.09004 * 109.46906 * 180.02562 * 18 17 16 35 35 H 1.08997 * 109.46916 * 300.00150 * 18 17 16 36 36 H 1.09001 * 109.47030 * 60.00357 * 18 17 16 37 37 H 1.08991 * 109.47515 * 300.00131 * 19 17 16 38 38 H 1.09004 * 109.47366 * 179.97438 * 19 17 16 39 39 H 1.09003 * 109.47607 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47653 * 59.99489 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2798 2.6540 9 1 -0.8021 0.8745 2.6992 10 1 0.9771 1.9955 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0198 -0.6925 -1.1994 13 6 2.5101 0.2668 -2.1979 14 6 1.3838 1.2310 -2.5751 15 6 2.9747 -0.4877 -3.4452 16 6 3.4860 0.5114 -4.4849 17 6 4.6590 1.3006 -3.9000 18 6 5.1700 2.3002 -4.9396 19 6 4.1945 2.0553 -2.6528 20 6 3.6832 1.0561 -1.6130 21 1 -0.3633 0.5653 -0.8582 22 1 -0.3634 0.4606 0.9186 23 1 -0.3633 -1.0258 -0.0604 24 1 1.9039 -0.5274 4.4375 25 1 1.3050 -1.2877 -1.5904 26 1 1.0014 1.7130 -1.6753 27 1 1.7676 1.9889 -3.2581 28 1 0.5796 0.6782 -3.0607 29 1 3.7771 -1.1747 -3.1764 30 1 2.1391 -1.0504 -3.8616 31 1 2.6838 1.1986 -4.7537 32 1 3.8165 -0.0262 -5.3737 33 1 5.4613 0.6134 -3.6312 34 1 6.0060 2.8622 -4.5230 35 1 5.5008 1.7629 -5.8283 36 1 4.3676 2.9874 -5.2080 37 1 3.3923 2.7425 -2.9215 38 1 5.0303 2.6173 -2.2358 39 1 3.3527 1.5937 -0.7242 40 1 4.4854 0.3689 -1.3442 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307751732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:46 Heat of formation + Delta-G solvation = -36.709295 kcal Electronic energy + Delta-G solvation = -16874.212261 eV Core-core repulsion = 14494.195793 eV Total energy + Delta-G solvation = -2380.016468 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80848 -37.42123 -34.79401 -33.02098 -31.68931 -29.84588 -28.74776 -27.00022 -25.50681 -23.91533 -22.13502 -21.15571 -19.33901 -18.80968 -16.95195 -16.79784 -15.87434 -15.45471 -15.23090 -14.94968 -14.67524 -14.39540 -14.30969 -13.75632 -13.72422 -13.20873 -12.93084 -12.81854 -12.76066 -12.68995 -12.37442 -12.06318 -11.94024 -11.80860 -11.73038 -11.55094 -11.20846 -11.10903 -10.95090 -10.71407 -10.61710 -8.91708 -8.24911 -6.25021 1.26930 1.32509 1.42579 2.31995 3.08872 3.43555 3.78365 3.90178 4.12943 4.24254 4.29286 4.43034 4.49875 4.53723 4.56924 4.67337 4.70962 4.73166 4.75296 4.86691 4.93211 4.95780 5.08570 5.09091 5.14486 5.16905 5.22580 5.29609 5.39537 5.40087 5.49413 5.54554 5.59243 5.72165 5.74963 6.14183 6.79390 6.81991 6.91621 7.39364 8.93127 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040085 B = 0.007628 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.347710 B = 3670.043658 C = 3755.194075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.189 3.811 3 H 0.030 0.970 4 C -0.494 4.494 5 H 0.030 0.970 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.950 3.050 9 H -0.267 1.267 10 H -0.300 1.300 11 H -0.251 1.251 12 N -0.681 5.681 13 C 0.112 3.888 14 C -0.178 4.178 15 C -0.100 4.100 16 C -0.105 4.105 17 C -0.091 4.091 18 C -0.141 4.141 19 C -0.108 4.108 20 C -0.104 4.104 21 H 0.064 0.936 22 H 0.032 0.968 23 H 0.055 0.945 24 H 0.263 0.737 25 H 0.334 0.666 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 7.623 -18.520 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.080 3.920 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.049 0.951 6 C -0.191 4.191 7 N -0.597 5.597 8 Si 0.777 3.223 9 H -0.194 1.194 10 H -0.228 1.228 11 H -0.175 1.175 12 N -0.311 5.311 13 C 0.021 3.979 14 C -0.237 4.237 15 C -0.138 4.138 16 C -0.143 4.143 17 C -0.110 4.110 18 C -0.198 4.198 19 C -0.146 4.146 20 C -0.142 4.142 21 H 0.082 0.918 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.152 0.848 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.121 7.488 -18.082 19.603 hybrid contribution -1.170 0.499 0.884 1.549 sum -0.049 7.987 -17.198 18.962 Atomic orbital electron populations 1.22783 0.99278 1.01416 0.99924 1.19397 0.89945 0.93925 0.88758 0.95284 1.21408 1.29524 1.12030 0.90353 0.95148 1.25821 0.97799 1.00035 0.95489 1.70055 1.48420 1.42750 0.98448 0.85851 0.79132 0.80172 0.77134 1.19366 1.22772 1.17512 1.60550 1.42203 1.22237 1.06098 1.20975 0.93979 0.91402 0.91503 1.22712 0.98972 1.00676 1.01327 1.21498 1.00670 0.97789 0.93871 1.21582 0.97774 0.97594 0.97330 1.21131 0.97662 0.97260 0.94932 1.21783 1.01028 0.98705 0.98303 1.21635 1.00619 0.97279 0.95055 1.21545 0.97382 0.97618 0.97668 0.91751 0.94952 0.92610 0.92807 0.84820 0.94084 0.90315 0.92015 0.92892 0.91515 0.90968 0.90617 0.92219 0.92702 0.91829 0.92195 0.91111 0.92063 0.94437 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.28 8.30 71.98 0.60 -6.68 16 2 C 0.19 8.82 1.28 44.17 0.06 8.88 16 3 H 0.03 1.41 3.97 -2.39 -0.01 1.40 16 4 C -0.49 -29.17 9.42 25.60 0.24 -28.93 16 5 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 6 C 0.00 0.26 5.45 84.66 0.46 0.72 16 7 N -0.95 -61.69 13.96 21.45 0.30 -61.39 16 8 Si 0.95 46.14 24.40 68.60 1.67 47.81 16 9 H -0.27 -12.33 6.84 99.48 0.68 -11.65 16 10 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 11 H -0.25 -11.29 6.53 99.48 0.65 -10.64 16 12 N -0.68 -27.45 5.94 -452.09 -2.69 -30.13 16 13 C 0.11 3.60 0.69 3.53 0.00 3.60 16 14 C -0.18 -4.97 6.85 71.98 0.49 -4.48 16 15 C -0.10 -2.63 4.98 30.59 0.15 -2.47 16 16 C -0.11 -2.12 4.93 30.59 0.15 -1.97 16 17 C -0.09 -1.94 2.72 -10.79 -0.03 -1.97 16 18 C -0.14 -2.30 9.19 71.98 0.66 -1.63 16 19 C -0.11 -2.74 4.93 30.60 0.15 -2.59 16 20 C -0.10 -3.58 4.63 30.60 0.14 -3.44 16 21 H 0.06 2.21 6.30 -2.39 -0.02 2.20 16 22 H 0.03 1.41 3.22 -2.39 -0.01 1.40 16 23 H 0.05 2.26 8.08 -2.39 -0.02 2.24 16 24 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 25 H 0.33 12.31 8.15 -89.69 -0.73 11.58 16 26 H 0.04 1.30 5.53 -2.38 -0.01 1.29 16 27 H 0.08 1.84 4.82 -2.39 -0.01 1.83 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.07 1.34 6.53 -2.39 -0.02 1.32 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 1.65 6.34 -2.39 -0.02 1.64 16 38 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.04 1.49 6.19 -2.39 -0.01 1.48 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -66.82 285.06 2.56 -64.26 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.20 Total: 20.42 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 3.08 Total: -40.97 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -2.39 Total: -91.53 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -66.82 2.56 -64.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.552 kcal (2) G-P(sol) polarization free energy of solvation -66.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds