Wall clock time and date at job start Mon Mar 30 2020 02:49:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52999 * 109.46626 * 2 1
4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3
5 5 N 1.46495 * 109.46909 * 175.00315 * 4 2 1
6 6 C 1.46503 * 119.99978 * 269.99697 * 5 4 2
7 7 C 1.50704 * 109.46959 * 90.00092 * 6 5 4
8 8 H 1.07993 * 119.99805 * 0.02562 * 7 6 5
9 9 C 1.37880 * 119.99704 * 180.02562 * 7 6 5
10 10 N 1.31513 * 120.00238 * 0.02562 * 9 7 6
11 11 Si 1.86804 * 119.99602 * 180.02562 * 9 7 6
12 12 H 1.48496 * 109.47045 * 90.00098 * 11 9 7
13 13 H 1.48507 * 109.46804 * 210.00005 * 11 9 7
14 14 H 1.48499 * 109.47075 * 329.99959 * 11 9 7
15 15 C 1.37487 * 120.00220 * 90.00099 * 5 4 2
16 16 N 1.29311 * 122.86888 * 0.02562 * 15 5 4
17 17 C 1.46947 * 110.08962 * 180.02562 * 16 15 5
18 18 C 1.54169 * 104.00704 * 0.02562 * 17 16 15
19 19 N 1.36781 * 122.86698 * 179.73462 * 15 5 4
20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3
21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3
22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3
23 23 H 1.09000 * 109.47050 * 240.00301 * 2 1 3
24 24 H 1.09000 * 109.47160 * 60.00369 * 3 2 1
25 25 H 1.09002 * 109.46719 * 180.02562 * 3 2 1
26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1
27 27 H 1.09001 * 109.47096 * 295.00066 * 4 2 1
28 28 H 1.08994 * 109.47065 * 55.00225 * 4 2 1
29 29 H 1.09003 * 109.47105 * 210.00106 * 6 5 4
30 30 H 1.08998 * 109.47160 * 330.00352 * 6 5 4
31 31 H 0.96998 * 119.99891 * 180.02562 * 10 9 7
32 32 H 1.09005 * 110.51837 * 118.63371 * 17 16 15
33 33 H 1.09000 * 110.52460 * 241.23127 * 17 16 15
34 34 H 1.08993 * 110.65791 * 118.44315 * 18 17 16
35 35 H 1.08995 * 110.65864 * 241.38506 * 18 17 16
36 36 H 0.97006 * 125.81907 * 359.97438 * 19 15 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0401 -0.7213 1.2492
5 7 3.5001 -0.8263 1.1905
6 6 4.1259 -1.9919 0.5611
7 6 4.3387 -1.7171 -0.9053
8 1 4.0383 -0.7690 -1.3262
9 6 4.9171 -2.6761 -1.7096
10 7 5.2824 -3.8309 -1.1971
11 14 5.1815 -2.3352 -3.5271
12 1 6.5178 -1.7187 -3.7258
13 1 5.1066 -3.6097 -4.2858
14 1 4.1304 -1.4064 -4.0146
15 6 4.2830 0.1688 1.7261
16 7 3.7899 1.2204 2.2945
17 6 4.8731 2.0953 2.7640
18 6 6.1589 1.3483 2.3573
19 7 5.6501 0.1284 1.7084
20 1 -0.3633 0.5139 -0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8900
23 1 1.8934 -0.5138 -0.8900
24 1 1.6766 1.9563 0.8900
25 1 3.1300 1.4425 -0.0005
26 1 1.6767 1.9564 -0.8899
27 1 1.7517 -0.1584 2.1369
28 1 1.6055 -1.7198 1.2950
29 1 5.0865 -2.1897 1.0368
30 1 3.4771 -2.8599 0.6776
31 1 5.6896 -4.5055 -1.7629
32 1 4.8224 3.0653 2.2693
33 1 4.8247 2.2165 3.8462
34 1 6.7455 1.9448 1.6587
35 1 6.7512 1.0954 3.2367
36 1 6.1922 -0.5815 1.3299
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308574463.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:58
Heat of formation + Delta-G solvation = 31.807099 kcal
Electronic energy + Delta-G solvation = -16433.489739 eV
Core-core repulsion = 13952.904021 eV
Total energy + Delta-G solvation = -2480.585718 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 225.154 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.37353 -36.55734 -33.81514 -32.40511 -30.74384 -28.61127 -27.23058 -26.45052
-24.69256 -22.63781 -21.42064 -19.69792 -18.35092 -17.17125 -16.52928 -15.26423
-14.86539 -14.47375 -14.07258 -13.72411 -13.31045 -12.79608 -12.44507 -12.09241
-11.96359 -11.68983 -11.62826 -11.42133 -11.25637 -11.16808 -10.84181 -10.73124
-10.42917 -10.22755 -10.13667 -9.78863 -9.49038 -8.83574 -8.54899 -7.67957
-6.79158 -6.12051 -4.21357 3.23107 3.30499 3.34408 3.63280 3.82092
4.34019 4.68148 5.16519 5.20833 5.53715 5.58674 5.61822 5.72331
5.78484 6.06626 6.10957 6.19657 6.24521 6.41290 6.42822 6.44836
6.56553 6.61093 6.74520 7.00927 7.08310 7.12388 7.18534 7.24402
7.68735 7.84684 8.11650 8.12169 8.80536 8.98585 9.20681 9.47557
10.91112
Molecular weight = 225.15amu
Principal moments of inertia in cm(-1)
A = 0.020610 B = 0.010939 C = 0.008451
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1358.247360 B = 2559.140174 C = 3312.310004
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.116 4.116
3 C -0.124 4.124
4 C 0.156 3.844
5 N -0.595 5.595
6 C 0.254 3.746
7 C -0.529 4.529
8 H 0.063 0.937
9 C 0.062 3.938
10 N -0.895 5.895
11 Si 0.894 3.106
12 H -0.281 1.281
13 H -0.286 1.286
14 H -0.273 1.273
15 C 0.621 3.379
16 N -0.666 5.666
17 C 0.051 3.949
18 C 0.089 3.911
19 N -0.763 5.763
20 H 0.047 0.953
21 H 0.049 0.951
22 H 0.049 0.951
23 H 0.081 0.919
24 H 0.054 0.946
25 H 0.057 0.943
26 H 0.028 0.972
27 H 0.071 0.929
28 H 0.062 0.938
29 H 0.025 0.975
30 H 0.036 0.964
31 H 0.264 0.736
32 H 0.061 0.939
33 H 0.060 0.940
34 H 0.060 0.940
35 H 0.059 0.941
36 H 0.415 0.585
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.357 6.788 4.405 8.428
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.136 4.136
3 C -0.182 4.182
4 C 0.032 3.968
5 N -0.313 5.313
6 C 0.133 3.867
7 C -0.569 4.569
8 H 0.081 0.919
9 C -0.140 4.140
10 N -0.534 5.534
11 Si 0.722 3.278
12 H -0.207 1.207
13 H -0.212 1.212
14 H -0.198 1.198
15 C 0.260 3.740
16 N -0.414 5.414
17 C -0.081 4.081
18 C -0.038 4.038
19 N -0.412 5.412
20 H 0.067 0.933
21 H 0.069 0.931
22 H 0.068 0.932
23 H 0.100 0.900
24 H 0.073 0.927
25 H 0.076 0.924
26 H 0.048 0.952
27 H 0.090 0.910
28 H 0.080 0.920
29 H 0.043 0.957
30 H 0.054 0.946
31 H 0.073 0.927
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.078 0.922
35 H 0.077 0.923
36 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges -3.107 6.983 4.589 8.916
hybrid contribution 1.482 -0.430 -1.485 2.142
sum -1.625 6.553 3.105 7.431
Atomic orbital electron populations
1.21763 0.96190 1.00970 1.00935 1.21599 0.94217 0.97413 1.00386
1.21669 1.01819 0.95159 0.99527 1.21175 0.79074 0.99255 0.97336
1.46139 1.04195 1.20220 1.60786 1.19226 0.93186 0.82099 0.92160
1.21623 1.40130 1.01372 0.93734 0.91901 1.24959 0.95379 0.94904
0.98776 1.69924 1.41568 1.05753 1.36112 0.86553 0.78631 0.77663
0.84957 1.20708 1.21177 1.19799 1.19495 0.80270 0.87788 0.86495
1.74546 1.24725 1.07287 1.34824 1.22610 0.88490 0.97546 0.99420
1.22362 0.97900 0.87045 0.96523 1.45854 1.04827 1.24313 1.66208
0.93347 0.93150 0.93194 0.90036 0.92703 0.92362 0.95246 0.91040
0.91978 0.95693 0.94650 0.92667 0.92109 0.92167 0.92183 0.92271
0.74557
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.08 9.19 37.16 0.34 -1.74 16
2 C -0.12 -2.11 3.13 -90.62 -0.28 -2.39 16
3 C -0.12 -2.29 7.93 37.16 0.29 -1.99 16
4 C 0.16 2.95 5.06 -4.05 -0.02 2.93 16
5 N -0.59 -12.65 2.40 -177.31 -0.43 -13.07 16
6 C 0.25 6.09 5.18 -5.19 -0.03 6.06 16
7 C -0.53 -13.77 8.82 -34.44 -0.30 -14.08 16
8 H 0.06 1.69 7.24 -52.49 -0.38 1.31 16
9 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16
10 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16
11 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16
12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16
15 C 0.62 12.81 6.71 -322.34 -2.16 10.65 16
16 N -0.67 -13.13 8.85 -61.28 -0.54 -13.67 16
17 C 0.05 0.83 8.04 -3.19 -0.03 0.81 16
18 C 0.09 1.37 8.11 -3.02 -0.02 1.34 16
19 N -0.76 -14.47 6.24 -61.09 -0.38 -14.86 16
20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
23 H 0.08 1.71 6.95 -51.93 -0.36 1.35 16
24 H 0.05 0.99 7.97 -51.93 -0.41 0.58 16
25 H 0.06 1.23 6.04 -51.93 -0.31 0.91 16
26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16
27 H 0.07 1.33 7.50 -51.93 -0.39 0.94 16
28 H 0.06 1.13 7.89 -51.93 -0.41 0.72 16
29 H 0.03 0.63 6.75 -51.93 -0.35 0.27 16
30 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16
31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
36 H 0.41 8.07 7.52 -40.82 -0.31 7.77 16
LS Contribution 288.48 15.07 4.35 4.35
Total: -1.00 -27.57 288.48 -9.45 -37.02
By element:
Atomic # 1 Polarization: 11.13 SS G_CDS: -5.85 Total: 5.28 kcal
Atomic # 6 Polarization: 5.45 SS G_CDS: -2.31 Total: 3.14 kcal
Atomic # 7 Polarization: -65.04 SS G_CDS: -0.61 Total: -65.65 kcal
Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -27.57 -9.45 -37.02 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308574463.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.828 kcal
(2) G-P(sol) polarization free energy of solvation -27.574 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.254 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.807 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds