Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 N 1.46495 * 109.46909 * 175.00315 * 4 2 1 6 6 C 1.46503 * 119.99978 * 269.99697 * 5 4 2 7 7 C 1.50704 * 109.46959 * 90.00092 * 6 5 4 8 8 H 1.07993 * 119.99805 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99704 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00238 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99602 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47045 * 90.00098 * 11 9 7 13 13 H 1.48507 * 109.46804 * 210.00005 * 11 9 7 14 14 H 1.48499 * 109.47075 * 329.99959 * 11 9 7 15 15 C 1.37487 * 120.00220 * 90.00099 * 5 4 2 16 16 N 1.29311 * 122.86888 * 0.02562 * 15 5 4 17 17 C 1.46947 * 110.08962 * 180.02562 * 16 15 5 18 18 C 1.54169 * 104.00704 * 0.02562 * 17 16 15 19 19 N 1.36781 * 122.86698 * 179.73462 * 15 5 4 20 20 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 21 21 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 23 23 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 25 25 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 26 26 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 27 27 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 28 28 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 29 29 H 1.09003 * 109.47105 * 210.00106 * 6 5 4 30 30 H 1.08998 * 109.47160 * 330.00352 * 6 5 4 31 31 H 0.96998 * 119.99891 * 180.02562 * 10 9 7 32 32 H 1.09005 * 110.51837 * 118.63371 * 17 16 15 33 33 H 1.09000 * 110.52460 * 241.23127 * 17 16 15 34 34 H 1.08993 * 110.65791 * 118.44315 * 18 17 16 35 35 H 1.08995 * 110.65864 * 241.38506 * 18 17 16 36 36 H 0.97006 * 125.81907 * 359.97438 * 19 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9919 0.5611 7 6 4.3387 -1.7171 -0.9053 8 1 4.0383 -0.7690 -1.3262 9 6 4.9171 -2.6761 -1.7096 10 7 5.2824 -3.8309 -1.1971 11 14 5.1815 -2.3352 -3.5271 12 1 6.5178 -1.7187 -3.7258 13 1 5.1066 -3.6097 -4.2858 14 1 4.1304 -1.4064 -4.0146 15 6 4.2830 0.1688 1.7261 16 7 3.7899 1.2204 2.2945 17 6 4.8731 2.0953 2.7640 18 6 6.1589 1.3483 2.3573 19 7 5.6501 0.1284 1.7084 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.6766 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.7517 -0.1584 2.1369 28 1 1.6055 -1.7198 1.2950 29 1 5.0865 -2.1897 1.0368 30 1 3.4771 -2.8599 0.6776 31 1 5.6896 -4.5055 -1.7629 32 1 4.8224 3.0653 2.2693 33 1 4.8247 2.2165 3.8462 34 1 6.7455 1.9448 1.6587 35 1 6.7512 1.0954 3.2367 36 1 6.1922 -0.5815 1.3299 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308574463.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = 31.807099 kcal Electronic energy + Delta-G solvation = -16433.489739 eV Core-core repulsion = 13952.904021 eV Total energy + Delta-G solvation = -2480.585718 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.37353 -36.55734 -33.81514 -32.40511 -30.74384 -28.61127 -27.23058 -26.45052 -24.69256 -22.63781 -21.42064 -19.69792 -18.35092 -17.17125 -16.52928 -15.26423 -14.86539 -14.47375 -14.07258 -13.72411 -13.31045 -12.79608 -12.44507 -12.09241 -11.96359 -11.68983 -11.62826 -11.42133 -11.25637 -11.16808 -10.84181 -10.73124 -10.42917 -10.22755 -10.13667 -9.78863 -9.49038 -8.83574 -8.54899 -7.67957 -6.79158 -6.12051 -4.21357 3.23107 3.30499 3.34408 3.63280 3.82092 4.34019 4.68148 5.16519 5.20833 5.53715 5.58674 5.61822 5.72331 5.78484 6.06626 6.10957 6.19657 6.24521 6.41290 6.42822 6.44836 6.56553 6.61093 6.74520 7.00927 7.08310 7.12388 7.18534 7.24402 7.68735 7.84684 8.11650 8.12169 8.80536 8.98585 9.20681 9.47557 10.91112 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.010939 C = 0.008451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.247360 B = 2559.140174 C = 3312.310004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.124 4.124 4 C 0.156 3.844 5 N -0.595 5.595 6 C 0.254 3.746 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.894 3.106 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.621 3.379 16 N -0.666 5.666 17 C 0.051 3.949 18 C 0.089 3.911 19 N -0.763 5.763 20 H 0.047 0.953 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 6.788 4.405 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C -0.182 4.182 4 C 0.032 3.968 5 N -0.313 5.313 6 C 0.133 3.867 7 C -0.569 4.569 8 H 0.081 0.919 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.260 3.740 16 N -0.414 5.414 17 C -0.081 4.081 18 C -0.038 4.038 19 N -0.412 5.412 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.107 6.983 4.589 8.916 hybrid contribution 1.482 -0.430 -1.485 2.142 sum -1.625 6.553 3.105 7.431 Atomic orbital electron populations 1.21763 0.96190 1.00970 1.00935 1.21599 0.94217 0.97413 1.00386 1.21669 1.01819 0.95159 0.99527 1.21175 0.79074 0.99255 0.97336 1.46139 1.04195 1.20220 1.60786 1.19226 0.93186 0.82099 0.92160 1.21623 1.40130 1.01372 0.93734 0.91901 1.24959 0.95379 0.94904 0.98776 1.69924 1.41568 1.05753 1.36112 0.86553 0.78631 0.77663 0.84957 1.20708 1.21177 1.19799 1.19495 0.80270 0.87788 0.86495 1.74546 1.24725 1.07287 1.34824 1.22610 0.88490 0.97546 0.99420 1.22362 0.97900 0.87045 0.96523 1.45854 1.04827 1.24313 1.66208 0.93347 0.93150 0.93194 0.90036 0.92703 0.92362 0.95246 0.91040 0.91978 0.95693 0.94650 0.92667 0.92109 0.92167 0.92183 0.92271 0.74557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.19 37.16 0.34 -1.74 16 2 C -0.12 -2.11 3.13 -90.62 -0.28 -2.39 16 3 C -0.12 -2.29 7.93 37.16 0.29 -1.99 16 4 C 0.16 2.95 5.06 -4.05 -0.02 2.93 16 5 N -0.59 -12.65 2.40 -177.31 -0.43 -13.07 16 6 C 0.25 6.09 5.18 -5.19 -0.03 6.06 16 7 C -0.53 -13.77 8.82 -34.44 -0.30 -14.08 16 8 H 0.06 1.69 7.24 -52.49 -0.38 1.31 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 11 Si 0.89 20.89 29.54 -169.99 -5.02 15.86 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.62 12.81 6.71 -322.34 -2.16 10.65 16 16 N -0.67 -13.13 8.85 -61.28 -0.54 -13.67 16 17 C 0.05 0.83 8.04 -3.19 -0.03 0.81 16 18 C 0.09 1.37 8.11 -3.02 -0.02 1.34 16 19 N -0.76 -14.47 6.24 -61.09 -0.38 -14.86 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 1.71 6.95 -51.93 -0.36 1.35 16 24 H 0.05 0.99 7.97 -51.93 -0.41 0.58 16 25 H 0.06 1.23 6.04 -51.93 -0.31 0.91 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.33 7.50 -51.93 -0.39 0.94 16 28 H 0.06 1.13 7.89 -51.93 -0.41 0.72 16 29 H 0.03 0.63 6.75 -51.93 -0.35 0.27 16 30 H 0.04 0.90 7.89 -51.93 -0.41 0.49 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.41 8.07 7.52 -40.82 -0.31 7.77 16 LS Contribution 288.48 15.07 4.35 4.35 Total: -1.00 -27.57 288.48 -9.45 -37.02 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -5.85 Total: 5.28 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.31 Total: 3.14 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -0.61 Total: -65.65 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.57 -9.45 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308574463.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.828 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds