Wall clock time and date at job start Mon Mar 30 2020 03:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.05489 * 2 1 4 4 C 1.53001 * 109.47518 * 301.42079 * 3 2 1 5 5 N 1.46900 * 109.47175 * 179.97438 * 4 3 2 6 6 C 1.46896 * 110.99942 * 180.02562 * 5 4 3 7 7 C 1.53009 * 109.47214 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47238 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99988 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00044 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99932 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99991 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46956 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47107 * 119.99676 * 12 10 8 15 15 H 1.48500 * 109.46899 * 239.99572 * 12 10 8 16 16 C 1.53869 * 110.03485 * 121.42201 * 2 1 3 17 17 C 1.54270 * 106.63967 * 119.25869 * 16 2 1 18 18 C 1.54961 * 104.16191 * 336.44607 * 17 16 2 19 19 C 1.54268 * 110.02859 * 238.59111 * 2 1 3 20 20 H 1.08997 * 109.46645 * 298.57674 * 1 2 3 21 21 H 1.09002 * 109.47322 * 58.57852 * 1 2 3 22 22 H 1.09003 * 109.47022 * 178.58091 * 1 2 3 23 23 H 1.09003 * 109.46563 * 61.42261 * 3 2 1 24 24 H 1.08998 * 109.47417 * 181.41792 * 3 2 1 25 25 H 1.08996 * 109.47218 * 300.00019 * 4 3 2 26 26 H 1.09004 * 109.46869 * 60.00360 * 4 3 2 27 27 H 1.00910 * 111.00093 * 303.95555 * 5 4 3 28 28 H 1.08989 * 109.47374 * 299.99721 * 6 5 4 29 29 H 1.09001 * 109.47492 * 60.00460 * 6 5 4 30 30 H 1.09003 * 109.46818 * 300.00441 * 7 6 5 31 31 H 1.09001 * 109.46433 * 59.99912 * 7 6 5 32 32 H 0.97001 * 119.99834 * 180.02562 * 11 10 8 33 33 H 1.09002 * 110.03268 * 238.56956 * 16 2 1 34 34 H 1.08995 * 110.03391 * 359.95262 * 16 2 1 35 35 H 1.08997 * 110.48585 * 95.09409 * 17 16 2 36 36 H 1.09002 * 110.48442 * 217.73292 * 17 16 2 37 37 H 1.09001 * 110.71970 * 279.57802 * 18 17 16 38 38 H 1.08991 * 110.92569 * 156.29385 * 18 17 16 39 39 H 1.08997 * 110.48788 * 22.99975 * 19 2 1 40 40 H 1.09000 * 110.48806 * 145.51275 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 1.5232 2.1742 -1.2309 5 7 2.0265 3.5543 -1.2305 6 6 1.5350 4.2943 -2.4005 7 6 2.0785 5.7241 -2.3649 8 6 1.5738 6.4833 -3.5648 9 1 0.9301 5.9948 -4.2813 10 6 1.9346 7.8014 -3.7484 11 7 2.7188 8.3961 -2.8761 12 14 1.3083 8.7427 -5.2354 13 1 0.4488 7.8539 -6.0579 14 1 0.5179 9.9153 -4.7820 15 1 2.4608 9.2071 -6.0486 16 6 2.0572 -0.7536 1.2336 17 6 2.8872 -1.9414 0.7043 18 6 2.3281 -2.1901 -0.7194 19 6 2.0584 -0.7553 -1.2370 20 1 -0.3632 0.4916 0.9025 21 1 -0.3634 0.5358 -0.8770 22 1 -0.3633 -1.0274 -0.0255 23 1 1.7175 1.9470 0.9025 24 1 3.1443 1.4263 -0.0254 25 1 1.8604 1.6644 -2.1334 26 1 0.4335 2.1853 -1.2054 27 1 1.7815 4.0284 -0.3741 28 1 1.8723 3.7996 -3.3112 29 1 0.4454 4.3197 -2.3829 30 1 1.7409 6.2186 -1.4541 31 1 3.1681 5.6991 -2.3823 32 1 2.9723 9.3235 -3.0051 33 1 2.6868 -0.0955 1.8324 34 1 1.2231 -1.1187 1.8327 35 1 3.9439 -1.6779 0.6583 36 1 2.7392 -2.8201 1.3321 37 1 1.4031 -2.7651 -0.6754 38 1 3.0651 -2.6941 -1.3445 39 1 1.3060 -0.7694 -2.0255 40 1 2.9798 -0.2985 -1.5982 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308701856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:52 Heat of formation + Delta-G solvation = -42.531918 kcal Electronic energy + Delta-G solvation = -15495.902339 eV Core-core repulsion = 13115.633383 eV Total energy + Delta-G solvation = -2380.268956 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.33332 -35.96223 -33.32344 -32.15511 -29.69718 -28.85353 -27.38031 -25.30081 -23.70072 -21.87887 -20.60306 -20.48876 -18.45261 -16.29645 -15.72615 -15.56699 -15.05288 -14.47979 -14.15327 -13.75501 -13.54864 -13.21881 -12.89046 -12.51519 -12.24207 -12.04286 -11.55945 -11.30163 -11.19920 -11.10948 -10.92840 -10.87331 -10.65707 -10.59777 -10.47781 -10.34173 -10.29577 -9.90320 -9.31096 -9.09553 -8.33199 -7.72906 -5.97604 -3.99985 3.32612 3.39757 3.44060 4.39184 4.46831 4.52915 4.58409 4.91487 5.19474 5.21845 5.26214 5.35012 5.38288 5.45121 5.52097 5.56335 5.66928 5.74353 5.75990 5.85105 5.87534 5.96029 6.01237 6.09673 6.22152 6.23023 6.24039 6.38529 6.41628 6.46701 6.54386 7.02284 7.54741 7.77133 7.87359 8.02152 8.12442 8.46882 9.07629 9.63667 11.13935 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062740 B = 0.003925 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.179994 B = 7132.784990 C = 7222.050735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.104 4.104 4 C 0.057 3.943 5 N -0.694 5.694 6 C 0.066 3.934 7 C 0.024 3.976 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.057 3.943 11 N -0.894 5.894 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.116 4.116 17 C -0.124 4.124 18 C -0.125 4.125 19 C -0.116 4.116 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.023 0.977 27 H 0.334 0.666 28 H 0.057 0.943 29 H 0.013 0.987 30 H 0.013 0.987 31 H 0.025 0.975 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 -19.637 7.133 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 C -0.142 4.142 4 C -0.073 4.073 5 N -0.325 5.325 6 C -0.062 4.062 7 C -0.013 4.013 8 C -0.559 4.559 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.533 5.533 12 Si 0.720 3.280 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.154 4.154 17 C -0.162 4.162 18 C -0.163 4.163 19 C -0.154 4.154 20 H 0.071 0.929 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.042 0.958 27 H 0.151 0.849 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.692 -19.632 6.862 20.866 hybrid contribution -1.265 0.799 -0.549 1.594 sum -2.957 -18.834 6.313 20.083 Atomic orbital electron populations 1.21975 0.94697 1.01211 1.01943 1.21162 0.95323 0.95047 0.94864 1.21688 1.01141 0.93408 0.97933 1.22026 0.96442 0.90601 0.98214 1.60591 1.63599 1.01954 1.06316 1.22137 0.95787 0.96970 0.91307 1.19080 0.97163 0.88273 0.96807 1.21229 1.30024 0.96331 1.08359 0.92729 1.25012 0.95179 0.97745 0.96495 1.69987 1.35653 1.12092 1.35557 0.86531 0.78657 0.79860 0.82915 1.19772 1.21036 1.20968 1.22273 0.99285 0.96730 0.97081 1.22354 0.99638 0.97835 0.96341 1.22498 1.00454 0.97084 0.96223 1.22512 1.01205 0.94728 0.96927 0.92864 0.92246 0.93003 0.92377 0.91158 0.91556 0.95845 0.84896 0.92495 0.96845 0.96841 0.95664 0.93065 0.91688 0.92003 0.91710 0.92141 0.91885 0.91887 0.91746 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.79 37.16 0.29 -1.13 16 2 C -0.06 -0.66 0.68 -153.39 -0.10 -0.77 16 3 C -0.10 -1.29 4.17 -26.73 -0.11 -1.41 16 4 C 0.06 0.85 5.11 -3.82 -0.02 0.83 16 5 N -0.69 -12.93 6.50 -113.78 -0.74 -13.67 16 6 C 0.07 1.45 5.62 -3.82 -0.02 1.43 16 7 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 8 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 9 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 10 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 12 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 16 C -0.12 -1.09 6.11 -25.61 -0.16 -1.24 16 17 C -0.12 -1.07 6.84 -25.03 -0.17 -1.24 16 18 C -0.13 -1.10 6.91 -24.70 -0.17 -1.27 16 19 C -0.12 -1.19 4.86 -25.07 -0.12 -1.32 16 20 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.06 0.64 6.38 -51.93 -0.33 0.31 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 25 H 0.07 1.01 7.27 -51.93 -0.38 0.63 16 26 H 0.02 0.35 6.42 -51.93 -0.33 0.02 16 27 H 0.33 6.01 8.73 -39.29 -0.34 5.66 16 28 H 0.06 1.26 8.14 -51.94 -0.42 0.83 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 33 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 34 H 0.06 0.54 7.67 -51.93 -0.40 0.15 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 40 H 0.07 0.79 7.74 -51.93 -0.40 0.38 16 LS Contribution 312.00 15.07 4.70 4.70 Total: -1.00 -30.05 312.00 -9.07 -39.12 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.60 Total: -0.98 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -1.14 Total: -19.48 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.00 Total: -40.29 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.05 -9.07 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308701856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.413 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds