Wall clock time and date at job start Mon Mar 30 2020 03:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 110.05489 * 2 1 4 4 C 1.53001 * 109.47518 * 301.42079 * 3 2 1 5 5 N 1.46900 * 109.47175 * 179.97438 * 4 3 2 6 6 C 1.46896 * 110.99942 * 180.02562 * 5 4 3 7 7 C 1.53009 * 109.47214 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47238 * 180.02562 * 7 6 5 9 9 H 1.08004 * 119.99988 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00044 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99932 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99991 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46956 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47107 * 119.99676 * 12 10 8 15 15 H 1.48500 * 109.46899 * 239.99572 * 12 10 8 16 16 C 1.53869 * 110.03485 * 121.42201 * 2 1 3 17 17 C 1.54270 * 106.63967 * 119.25869 * 16 2 1 18 18 C 1.54961 * 104.16191 * 336.44607 * 17 16 2 19 19 C 1.54268 * 110.02859 * 238.59111 * 2 1 3 20 20 H 1.08997 * 109.46645 * 298.57674 * 1 2 3 21 21 H 1.09002 * 109.47322 * 58.57852 * 1 2 3 22 22 H 1.09003 * 109.47022 * 178.58091 * 1 2 3 23 23 H 1.09003 * 109.46563 * 61.42261 * 3 2 1 24 24 H 1.08998 * 109.47417 * 181.41792 * 3 2 1 25 25 H 1.08996 * 109.47218 * 300.00019 * 4 3 2 26 26 H 1.09004 * 109.46869 * 60.00360 * 4 3 2 27 27 H 1.00910 * 111.00093 * 303.95555 * 5 4 3 28 28 H 1.08989 * 109.47374 * 299.99721 * 6 5 4 29 29 H 1.09001 * 109.47492 * 60.00460 * 6 5 4 30 30 H 1.09003 * 109.46818 * 300.00441 * 7 6 5 31 31 H 1.09001 * 109.46433 * 59.99912 * 7 6 5 32 32 H 0.97001 * 119.99834 * 180.02562 * 11 10 8 33 33 H 1.09002 * 110.03268 * 238.56956 * 16 2 1 34 34 H 1.08995 * 110.03391 * 359.95262 * 16 2 1 35 35 H 1.08997 * 110.48585 * 95.09409 * 17 16 2 36 36 H 1.09002 * 110.48442 * 217.73292 * 17 16 2 37 37 H 1.09001 * 110.71970 * 279.57802 * 18 17 16 38 38 H 1.08991 * 110.92569 * 156.29385 * 18 17 16 39 39 H 1.08997 * 110.48788 * 22.99975 * 19 2 1 40 40 H 1.09000 * 110.48806 * 145.51275 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 1.5232 2.1742 -1.2309 5 7 2.0265 3.5543 -1.2305 6 6 1.5350 4.2943 -2.4005 7 6 2.0785 5.7241 -2.3649 8 6 1.5738 6.4833 -3.5648 9 1 0.9301 5.9948 -4.2813 10 6 1.9346 7.8014 -3.7484 11 7 2.7188 8.3961 -2.8761 12 14 1.3083 8.7427 -5.2354 13 1 0.4488 7.8539 -6.0579 14 1 0.5179 9.9153 -4.7820 15 1 2.4608 9.2071 -6.0486 16 6 2.0572 -0.7536 1.2336 17 6 2.8872 -1.9414 0.7043 18 6 2.3281 -2.1901 -0.7194 19 6 2.0584 -0.7553 -1.2370 20 1 -0.3632 0.4916 0.9025 21 1 -0.3634 0.5358 -0.8770 22 1 -0.3633 -1.0274 -0.0255 23 1 1.7175 1.9470 0.9025 24 1 3.1443 1.4263 -0.0254 25 1 1.8604 1.6644 -2.1334 26 1 0.4335 2.1853 -1.2054 27 1 1.7815 4.0284 -0.3741 28 1 1.8723 3.7996 -3.3112 29 1 0.4454 4.3197 -2.3829 30 1 1.7409 6.2186 -1.4541 31 1 3.1681 5.6991 -2.3823 32 1 2.9723 9.3235 -3.0051 33 1 2.6868 -0.0955 1.8324 34 1 1.2231 -1.1187 1.8327 35 1 3.9439 -1.6779 0.6583 36 1 2.7392 -2.8201 1.3321 37 1 1.4031 -2.7651 -0.6754 38 1 3.0651 -2.6941 -1.3445 39 1 1.3060 -0.7694 -2.0255 40 1 2.9798 -0.2985 -1.5982 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308701856.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:51 Heat of formation + Delta-G solvation = -60.011150 kcal Electronic energy + Delta-G solvation = -15496.660296 eV Core-core repulsion = 13115.633383 eV Total energy + Delta-G solvation = -2381.026912 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19143 -37.48786 -35.20743 -33.50877 -31.31167 -29.62011 -28.72922 -26.52205 -25.34704 -23.03561 -22.42873 -21.36360 -19.32484 -18.52064 -17.01997 -16.52882 -16.42916 -16.07664 -15.32539 -14.92076 -14.85542 -14.57425 -14.24913 -13.73253 -13.44324 -13.39552 -13.11516 -12.86320 -12.51044 -12.43062 -12.26219 -11.92492 -11.90791 -11.75161 -11.58972 -11.39980 -11.35557 -11.28033 -11.17881 -10.99112 -10.58061 -9.26549 -8.21450 -6.33322 1.39925 1.40708 1.54162 2.40019 3.11817 3.32017 3.67512 3.75717 3.91524 4.19740 4.26403 4.47518 4.49760 4.52451 4.57632 4.62484 4.65934 4.73341 4.75670 4.85625 4.99723 5.02543 5.04112 5.07675 5.16706 5.17849 5.24974 5.28858 5.37242 5.43769 5.51829 5.54390 5.61628 5.65730 5.77738 6.13635 6.28259 6.54935 6.83969 7.36104 8.91060 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062740 B = 0.003925 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.179994 B = 7132.784990 C = 7222.050735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.096 4.096 4 C 0.060 3.940 5 N -0.701 5.701 6 C 0.084 3.916 7 C 0.031 3.969 8 C -0.546 4.546 9 H 0.060 0.940 10 C 0.000 4.000 11 N -0.932 5.932 12 Si 0.969 3.031 13 H -0.262 1.262 14 H -0.276 1.276 15 H -0.277 1.277 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.122 4.122 19 C -0.119 4.119 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.030 0.970 27 H 0.337 0.663 28 H 0.055 0.945 29 H 0.017 0.983 30 H -0.008 1.008 31 H -0.006 1.006 32 H 0.264 0.736 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 -20.765 6.771 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.062 4.062 3 C -0.134 4.134 4 C -0.068 4.068 5 N -0.332 5.332 6 C -0.045 4.045 7 C -0.007 4.007 8 C -0.584 4.584 9 H 0.078 0.922 10 C -0.198 4.198 11 N -0.572 5.572 12 Si 0.793 3.207 13 H -0.186 1.186 14 H -0.202 1.202 15 H -0.203 1.203 16 C -0.153 4.153 17 C -0.161 4.161 18 C -0.159 4.159 19 C -0.157 4.157 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.155 0.845 28 H 0.074 0.926 29 H 0.035 0.965 30 H 0.010 0.990 31 H 0.012 0.988 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.636 -20.784 6.509 21.938 hybrid contribution -0.942 1.134 -0.392 1.525 sum -3.579 -19.650 6.117 20.889 Atomic orbital electron populations 1.21958 0.94166 1.01945 1.01585 1.21145 0.95686 0.93625 0.95695 1.21620 1.00497 0.94632 0.96635 1.22079 0.96836 0.88455 0.99478 1.60518 1.63998 1.03389 1.05317 1.21764 0.95611 0.94402 0.92711 1.18938 0.95147 0.91196 0.95404 1.21645 1.30432 0.97168 1.09166 0.92175 1.26008 0.95150 0.98841 0.99834 1.70119 1.36735 1.12683 1.37658 0.85337 0.78283 0.78303 0.78731 1.18562 1.20195 1.20259 1.22264 0.99679 0.96837 0.96503 1.22361 0.99277 0.98020 0.96409 1.22491 1.01065 0.96062 0.96282 1.22515 1.00523 0.95804 0.96847 0.92635 0.93200 0.91715 0.92129 0.92079 0.91791 0.95165 0.84521 0.92626 0.96459 0.98999 0.98786 0.92685 0.92038 0.91028 0.92052 0.90756 0.91024 0.91349 0.91878 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 7.79 71.98 0.56 -1.99 16 2 C -0.06 -1.18 0.68 -51.46 -0.04 -1.22 16 3 C -0.10 -2.32 4.17 30.59 0.13 -2.19 16 4 C 0.06 1.77 5.11 86.30 0.44 2.21 16 5 N -0.70 -26.20 6.50 -513.89 -3.34 -29.54 16 6 C 0.08 3.71 5.62 86.31 0.49 4.20 16 7 C 0.03 1.69 5.23 29.85 0.16 1.85 16 8 C -0.55 -31.98 9.11 25.60 0.23 -31.75 16 9 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 10 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 11 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 12 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 13 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 C -0.12 -1.94 6.11 31.32 0.19 -1.75 16 17 C -0.12 -1.87 6.84 31.70 0.22 -1.65 16 18 C -0.12 -1.89 6.91 31.91 0.22 -1.67 16 19 C -0.12 -2.30 4.86 31.67 0.15 -2.15 16 20 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.05 1.00 6.38 -2.39 -0.02 0.99 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.59 8.12 -2.39 -0.02 1.57 16 25 H 0.06 1.91 7.27 -2.39 -0.02 1.90 16 26 H 0.03 0.86 6.42 -2.39 -0.02 0.85 16 27 H 0.34 12.21 8.73 -89.69 -0.78 11.42 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 32 H 0.26 15.29 8.31 -92.71 -0.77 14.51 16 33 H 0.06 1.08 7.67 -2.39 -0.02 1.06 16 34 H 0.07 1.08 7.67 -2.39 -0.02 1.06 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.22 7.84 -2.39 -0.02 1.20 16 40 H 0.06 1.25 7.74 -2.39 -0.02 1.23 16 Total: -1.00 -63.89 312.00 2.37 -61.52 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.19 Total: 14.35 kcal Atomic # 6 Polarization: -38.89 SS G_CDS: 3.21 Total: -35.68 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -3.06 Total: -87.10 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.89 2.37 -61.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308701856.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.507 kcal (2) G-P(sol) polarization free energy of solvation -63.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds