Wall clock time and date at job start Mon Mar 30 2020 03:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47696 * 2 1 4 4 C 1.52996 * 109.47343 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47106 * 174.99571 * 4 3 2 6 6 C 1.53006 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47019 * 300.00109 * 6 5 4 8 8 C 1.53006 * 109.46646 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46998 * 175.00104 * 8 7 6 10 10 C 1.36931 * 120.00396 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99774 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00545 * 180.02562 * 10 9 8 13 13 N 1.31622 * 119.99833 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00256 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47110 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47258 * 119.99748 * 14 12 10 17 17 H 1.48508 * 109.46891 * 239.99707 * 14 12 10 18 18 C 1.52996 * 109.47350 * 60.00137 * 7 6 5 19 19 C 1.52996 * 109.46951 * 299.99902 * 18 7 6 20 20 H 1.09005 * 109.47157 * 59.99829 * 1 2 3 21 21 H 1.08996 * 109.47981 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47281 * 300.00757 * 1 2 3 23 23 H 1.09003 * 109.46784 * 239.99250 * 2 1 3 24 24 H 1.09002 * 109.46664 * 120.00170 * 2 1 3 25 25 H 1.08999 * 109.47010 * 59.99356 * 3 2 1 26 26 H 1.09004 * 109.46492 * 300.00052 * 3 2 1 27 27 H 1.09000 * 109.47315 * 54.99434 * 4 3 2 28 28 H 1.09006 * 109.46822 * 60.00073 * 5 4 3 29 29 H 1.08997 * 109.47474 * 299.99959 * 5 4 3 30 30 H 1.09004 * 109.46482 * 180.02562 * 6 5 4 31 31 H 1.08990 * 109.46745 * 60.00426 * 6 5 4 32 32 H 1.09000 * 109.47175 * 299.99937 * 7 6 5 33 33 H 1.08993 * 109.46955 * 295.00330 * 8 7 6 34 34 H 1.09000 * 109.47050 * 55.00158 * 8 7 6 35 35 H 0.97010 * 119.99909 * 359.97438 * 9 8 7 36 36 H 0.97001 * 119.99731 * 180.02562 * 13 12 10 37 37 H 1.09006 * 109.46822 * 59.99467 * 18 7 6 38 38 H 1.08997 * 109.47474 * 179.97438 * 18 7 6 39 39 H 1.08993 * 109.47243 * 299.99585 * 19 18 7 40 40 H 1.09007 * 109.46984 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8793 -0.1265 6 6 5.6102 2.8792 -0.1265 7 6 6.1201 2.2696 1.1809 8 6 7.6501 2.2690 1.1805 9 7 8.1386 1.7967 2.4784 10 6 9.4848 1.7110 2.7136 11 1 10.1866 1.9914 1.9420 12 6 9.9476 1.2630 3.9431 13 7 9.0924 0.9209 4.8833 14 14 11.7842 1.1455 4.2635 15 1 12.5266 1.5848 3.0548 16 1 12.1435 2.0182 5.4100 17 1 12.1425 -0.2605 4.5802 18 6 5.6101 0.8327 1.3067 19 6 4.0801 0.8328 1.3067 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8900 23 1 1.8932 -0.5140 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 1.9562 -0.8900 27 1 3.9330 0.8529 -0.8426 28 1 3.7171 3.4687 0.7156 29 1 3.7164 3.3137 -1.0576 30 1 5.9734 3.9031 -0.2157 31 1 5.9734 2.2898 -0.9682 32 1 5.7568 2.8592 2.0227 33 1 8.0130 1.6082 0.3934 34 1 8.0138 3.2809 1.0018 35 1 7.5082 1.5452 3.1716 36 1 9.4158 0.6081 5.7426 37 1 5.9734 0.2432 0.4648 38 1 5.9737 0.3983 2.2379 39 1 3.7168 1.4222 2.1485 40 1 3.7167 -0.1911 1.3959 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308750150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:37 Heat of formation + Delta-G solvation = -40.289708 kcal Electronic energy + Delta-G solvation = -15813.698703 eV Core-core repulsion = 13433.526976 eV Total energy + Delta-G solvation = -2380.171726 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.94310 -35.66841 -33.90321 -31.74502 -30.45650 -29.81011 -26.73974 -24.27075 -22.63168 -22.44820 -20.95665 -19.99726 -19.43469 -17.02915 -15.38891 -14.96667 -14.63685 -14.19797 -13.97854 -13.69128 -13.42580 -13.17927 -12.95778 -12.37933 -12.22364 -12.10519 -11.89927 -11.42112 -11.22788 -10.88933 -10.84543 -10.76868 -10.67209 -10.62575 -10.46827 -10.07540 -9.98283 -9.81145 -9.51623 -9.42368 -8.80636 -6.83514 -5.70723 -2.98227 3.46732 3.52180 3.54592 4.64321 4.67053 4.81175 4.93829 5.04065 5.16777 5.27662 5.36733 5.49092 5.63266 5.64865 5.67374 5.73532 5.76601 5.84421 5.86090 5.88313 5.91482 6.00485 6.09480 6.17546 6.25439 6.34147 6.35678 6.43331 6.47954 6.50466 6.59905 6.70342 6.85751 6.98741 7.08495 7.76111 8.48976 9.59785 10.20121 10.54914 11.52543 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050851 B = 0.004803 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.497501 B = 5828.642791 C = 6213.429956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.087 4.087 5 C -0.111 4.111 6 C -0.111 4.111 7 C -0.093 4.093 8 C 0.156 3.844 9 N -0.732 5.732 10 C -0.235 4.235 11 H 0.070 0.930 12 C -0.017 4.017 13 N -0.935 5.935 14 Si 0.906 3.094 15 H -0.281 1.281 16 H -0.292 1.292 17 H -0.292 1.292 18 C -0.110 4.110 19 C -0.114 4.114 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.384 0.616 36 H 0.253 0.747 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.213 0.771 -10.692 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.105 4.105 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.111 4.111 8 C 0.029 3.971 9 N -0.377 5.377 10 C -0.367 4.367 11 H 0.088 0.912 12 C -0.212 4.212 13 N -0.584 5.584 14 Si 0.737 3.263 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.219 1.219 18 C -0.147 4.147 19 C -0.151 4.151 20 H 0.070 0.930 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.218 0.782 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.029 0.782 -10.724 18.479 hybrid contribution 0.858 -0.168 0.498 1.006 sum -14.171 0.614 -10.226 17.486 Atomic orbital electron populations 1.21783 0.96325 1.01305 1.01547 1.21593 0.95340 0.97352 1.02208 1.21661 0.95473 0.96449 1.01590 1.21188 0.94191 0.96610 0.98551 1.21561 0.95988 0.96232 1.01078 1.21515 0.94771 1.00568 0.98014 1.21305 0.96433 0.96298 0.97102 1.20698 0.90625 0.96344 0.89445 1.42409 1.04665 1.79064 1.11514 1.19305 0.83627 1.36111 0.97642 0.91249 1.24727 0.97556 1.02432 0.96498 1.69676 1.32395 1.51222 1.05104 0.86126 0.85305 0.77206 0.77638 1.20612 1.21934 1.21932 1.21521 0.93932 0.96664 1.02608 1.21647 0.96437 1.00213 0.96802 0.93040 0.93029 0.92867 0.92253 0.91598 0.92146 0.92452 0.91517 0.92217 0.92654 0.92279 0.92257 0.91463 0.96562 0.96658 0.78249 0.93664 0.92584 0.90980 0.92289 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.20 5.69 -26.73 -0.15 -1.36 16 3 C -0.11 -1.14 4.68 -26.73 -0.13 -1.26 16 4 C -0.09 -1.01 2.19 -90.62 -0.20 -1.21 16 5 C -0.11 -1.32 5.20 -26.73 -0.14 -1.46 16 6 C -0.11 -1.53 5.20 -26.73 -0.14 -1.67 16 7 C -0.09 -1.58 2.23 -90.62 -0.20 -1.78 16 8 C 0.16 3.32 5.65 -4.04 -0.02 3.29 16 9 N -0.73 -19.26 5.33 -59.91 -0.32 -19.58 16 10 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 11 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 12 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 13 N -0.93 -28.90 13.06 55.49 0.72 -28.17 16 14 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 17 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 18 C -0.11 -1.80 5.08 -26.74 -0.14 -1.94 16 19 C -0.11 -1.52 4.96 -26.73 -0.13 -1.65 16 20 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 21 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.66 6.57 -51.93 -0.34 0.32 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.38 10.52 6.85 -40.82 -0.28 10.24 16 36 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.39 7.18 -51.93 -0.37 1.01 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 LS Contribution 309.11 15.07 4.66 4.66 Total: -1.00 -30.22 309.11 -8.73 -38.95 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -7.64 Total: 3.74 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.12 Total: -17.48 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: 0.41 Total: -47.75 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.22 -8.73 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308750150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.339 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds