Wall clock time and date at job start Mon Mar 30 2020 03:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47696 * 2 1 4 4 C 1.52996 * 109.47343 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47106 * 174.99571 * 4 3 2 6 6 C 1.53006 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47019 * 300.00109 * 6 5 4 8 8 C 1.53006 * 109.46646 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46998 * 175.00104 * 8 7 6 10 10 C 1.36931 * 120.00396 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99774 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00545 * 180.02562 * 10 9 8 13 13 N 1.31622 * 119.99833 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00256 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47110 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47258 * 119.99748 * 14 12 10 17 17 H 1.48508 * 109.46891 * 239.99707 * 14 12 10 18 18 C 1.52996 * 109.47350 * 60.00137 * 7 6 5 19 19 C 1.52996 * 109.46951 * 299.99902 * 18 7 6 20 20 H 1.09005 * 109.47157 * 59.99829 * 1 2 3 21 21 H 1.08996 * 109.47981 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47281 * 300.00757 * 1 2 3 23 23 H 1.09003 * 109.46784 * 239.99250 * 2 1 3 24 24 H 1.09002 * 109.46664 * 120.00170 * 2 1 3 25 25 H 1.08999 * 109.47010 * 59.99356 * 3 2 1 26 26 H 1.09004 * 109.46492 * 300.00052 * 3 2 1 27 27 H 1.09000 * 109.47315 * 54.99434 * 4 3 2 28 28 H 1.09006 * 109.46822 * 60.00073 * 5 4 3 29 29 H 1.08997 * 109.47474 * 299.99959 * 5 4 3 30 30 H 1.09004 * 109.46482 * 180.02562 * 6 5 4 31 31 H 1.08990 * 109.46745 * 60.00426 * 6 5 4 32 32 H 1.09000 * 109.47175 * 299.99937 * 7 6 5 33 33 H 1.08993 * 109.46955 * 295.00330 * 8 7 6 34 34 H 1.09000 * 109.47050 * 55.00158 * 8 7 6 35 35 H 0.97010 * 119.99909 * 359.97438 * 9 8 7 36 36 H 0.97001 * 119.99731 * 180.02562 * 13 12 10 37 37 H 1.09006 * 109.46822 * 59.99467 * 18 7 6 38 38 H 1.08997 * 109.47474 * 179.97438 * 18 7 6 39 39 H 1.08993 * 109.47243 * 299.99585 * 19 18 7 40 40 H 1.09007 * 109.46984 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0801 2.8793 -0.1265 6 6 5.6102 2.8792 -0.1265 7 6 6.1201 2.2696 1.1809 8 6 7.6501 2.2690 1.1805 9 7 8.1386 1.7967 2.4784 10 6 9.4848 1.7110 2.7136 11 1 10.1866 1.9914 1.9420 12 6 9.9476 1.2630 3.9431 13 7 9.0924 0.9209 4.8833 14 14 11.7842 1.1455 4.2635 15 1 12.5266 1.5848 3.0548 16 1 12.1435 2.0182 5.4100 17 1 12.1425 -0.2605 4.5802 18 6 5.6101 0.8327 1.3067 19 6 4.0801 0.8328 1.3067 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3635 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8900 23 1 1.8932 -0.5140 -0.8900 24 1 1.8932 -0.5139 0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6767 1.9562 -0.8900 27 1 3.9330 0.8529 -0.8426 28 1 3.7171 3.4687 0.7156 29 1 3.7164 3.3137 -1.0576 30 1 5.9734 3.9031 -0.2157 31 1 5.9734 2.2898 -0.9682 32 1 5.7568 2.8592 2.0227 33 1 8.0130 1.6082 0.3934 34 1 8.0138 3.2809 1.0018 35 1 7.5082 1.5452 3.1716 36 1 9.4158 0.6081 5.7426 37 1 5.9734 0.2432 0.4648 38 1 5.9737 0.3983 2.2379 39 1 3.7168 1.4222 2.1485 40 1 3.7167 -0.1911 1.3959 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308750150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:37 Heat of formation + Delta-G solvation = -56.493995 kcal Electronic energy + Delta-G solvation = -15814.401373 eV Core-core repulsion = 13433.526976 eV Total energy + Delta-G solvation = -2380.874397 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10258 -37.05531 -35.42666 -33.38089 -31.59983 -31.39309 -28.07239 -25.89401 -24.09511 -23.70190 -22.03835 -21.12354 -20.63827 -19.15490 -16.70024 -16.39425 -16.04265 -15.45755 -15.27629 -15.06194 -14.79709 -14.71768 -14.17832 -13.64741 -13.35846 -13.29109 -13.01175 -12.91704 -12.81798 -12.41396 -12.15292 -12.04919 -11.92393 -11.79552 -11.75197 -11.67455 -11.37242 -11.25337 -10.97804 -10.75796 -10.63426 -8.99945 -7.96163 -5.24977 1.45812 1.47197 1.57490 2.55247 3.36999 3.73153 3.78318 3.91940 4.02740 4.10571 4.29519 4.35042 4.47559 4.49964 4.62274 4.63700 4.70323 4.70844 4.79340 4.90930 4.97051 4.98125 5.06609 5.11729 5.17951 5.21155 5.24423 5.32015 5.33466 5.43581 5.44473 5.46626 5.51214 5.56994 5.64400 5.71500 6.26609 7.32262 8.09414 8.33400 9.27868 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050851 B = 0.004803 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.497501 B = 5828.642791 C = 6213.429956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.109 4.109 4 C -0.082 4.082 5 C -0.107 4.107 6 C -0.105 4.105 7 C -0.084 4.084 8 C 0.154 3.846 9 N -0.745 5.745 10 C -0.247 4.247 11 H 0.074 0.926 12 C -0.077 4.077 13 N -0.970 5.970 14 Si 0.976 3.024 15 H -0.266 1.266 16 H -0.291 1.291 17 H -0.292 1.292 18 C -0.105 4.105 19 C -0.107 4.107 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.016 0.984 34 H 0.015 0.985 35 H 0.374 0.626 36 H 0.251 0.749 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.866 1.207 -12.213 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.146 4.146 4 C -0.101 4.101 5 C -0.144 4.144 6 C -0.143 4.143 7 C -0.103 4.103 8 C 0.028 3.972 9 N -0.388 5.388 10 C -0.379 4.379 11 H 0.092 0.908 12 C -0.269 4.269 13 N -0.621 5.621 14 Si 0.805 3.195 15 H -0.191 1.191 16 H -0.218 1.218 17 H -0.219 1.219 18 C -0.143 4.143 19 C -0.144 4.144 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.206 0.794 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.689 1.234 -12.287 19.966 hybrid contribution 1.058 -0.302 0.941 1.448 sum -14.631 0.932 -11.346 18.539 Atomic orbital electron populations 1.21768 0.95376 1.01762 1.01921 1.21595 0.96213 0.96951 1.01857 1.21607 0.93906 0.96903 1.02188 1.21151 0.95474 0.96298 0.97134 1.21546 0.94133 0.96466 1.02279 1.21477 0.96422 1.00566 0.95828 1.21216 0.93452 0.96807 0.98780 1.20886 0.93556 0.95717 0.87090 1.42627 1.03879 1.79224 1.13047 1.19707 0.84954 1.35424 0.97845 0.90840 1.25598 1.02214 1.02690 0.96387 1.69837 1.34444 1.52437 1.05422 0.85038 0.79886 0.76898 0.77726 1.19071 1.21845 1.21864 1.21439 0.96311 0.95974 1.00575 1.21588 0.93853 1.00928 0.98075 0.92267 0.92601 0.92890 0.92042 0.92555 0.92292 0.91071 0.91255 0.92331 0.90307 0.91709 0.91668 0.92714 0.96607 0.96657 0.79407 0.93972 0.92632 0.94640 0.92759 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 71.98 0.71 -1.46 16 2 C -0.13 -2.17 5.69 30.59 0.17 -1.99 16 3 C -0.11 -1.89 4.68 30.59 0.14 -1.74 16 4 C -0.08 -1.72 2.19 -10.80 -0.02 -1.75 16 5 C -0.11 -2.25 5.20 30.60 0.16 -2.10 16 6 C -0.10 -2.72 5.20 30.60 0.16 -2.56 16 7 C -0.08 -2.85 2.23 -10.79 -0.02 -2.87 16 8 C 0.15 6.57 5.65 86.38 0.49 7.06 16 9 N -0.74 -40.08 5.33 -343.46 -1.83 -41.91 16 10 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 11 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 12 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 13 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 14 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 17 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 18 C -0.11 -3.51 5.08 30.59 0.16 -3.35 16 19 C -0.11 -2.79 4.96 30.59 0.15 -2.64 16 20 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 21 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.06 1.05 6.57 -2.39 -0.02 1.03 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.37 21.29 6.85 -92.70 -0.64 20.65 16 36 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.03 1.42 7.18 -2.39 -0.02 1.40 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.61 6.56 -2.38 -0.02 1.60 16 Total: -1.00 -64.53 309.11 4.22 -60.31 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.33 Total: 24.23 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 3.40 Total: -31.12 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -1.55 Total: -102.80 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -64.53 4.22 -60.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308750150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.817 kcal (2) G-P(sol) polarization free energy of solvation -64.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds