Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47167 * 2 1 4 4 N 1.46505 * 109.47374 * 119.99981 * 2 1 3 5 5 C 1.46499 * 119.99592 * 300.00390 * 4 2 1 6 6 C 1.50701 * 109.47260 * 90.00114 * 5 4 2 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99694 * 180.27562 * 6 5 4 9 9 N 1.31523 * 119.99908 * 179.72112 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 359.71709 * 8 6 5 11 11 H 1.48500 * 109.47210 * 90.00069 * 10 8 6 12 12 H 1.48504 * 109.47424 * 210.00300 * 10 8 6 13 13 H 1.48502 * 109.46888 * 330.00390 * 10 8 6 14 14 C 1.37478 * 119.99925 * 119.99587 * 4 2 1 15 15 N 1.29320 * 122.87021 * 0.03354 * 14 4 2 16 16 C 1.46943 * 110.08742 * 179.97438 * 15 14 4 17 17 C 1.54170 * 104.01175 * 359.97438 * 16 15 14 18 18 H 1.08990 * 110.66328 * 118.61054 * 17 16 15 19 19 C 1.52999 * 110.65749 * 241.55871 * 17 16 15 20 20 N 1.36787 * 122.86845 * 179.73593 * 14 4 2 21 21 H 1.09002 * 109.47157 * 299.99805 * 1 2 3 22 22 H 1.09002 * 109.47063 * 59.99930 * 1 2 3 23 23 H 1.09003 * 109.46939 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47157 * 240.00195 * 2 1 3 25 25 H 1.08999 * 109.47356 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47186 * 299.99994 * 3 2 1 27 27 H 1.09002 * 109.46922 * 60.00052 * 3 2 1 28 28 H 1.09000 * 109.47197 * 329.99120 * 5 4 2 29 29 H 1.09007 * 109.46342 * 209.99692 * 5 4 2 30 30 H 0.96995 * 120.00181 * 179.97438 * 9 8 6 31 31 H 1.08997 * 110.52328 * 118.62872 * 16 15 14 32 32 H 1.09001 * 110.52187 * 241.22525 * 16 15 14 33 33 H 1.08998 * 109.47506 * 59.99844 * 19 17 16 34 34 H 1.09002 * 109.46995 * 179.97438 * 19 17 16 35 35 H 1.09003 * 109.46980 * 299.99246 * 19 17 16 36 36 H 0.97003 * 125.80988 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 0.3830 -0.8389 2.9830 7 1 -0.1178 -1.5523 2.3454 8 6 -0.1532 -0.5169 4.2117 9 7 -1.2744 -1.0790 4.6076 10 14 0.7128 0.7176 5.3143 11 1 0.2130 2.0837 5.0160 12 1 0.4380 0.3894 6.7363 13 1 2.1760 0.6609 5.0671 14 6 2.8087 -1.8084 1.0700 15 7 3.1551 -2.2974 -0.0760 16 6 3.9965 -3.4866 0.1162 17 6 4.0974 -3.6289 1.6480 18 1 3.6719 -4.5775 1.9751 19 6 5.5516 -3.5047 2.1070 20 7 3.3008 -2.4950 2.1459 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.5295 0.8907 2.4843 29 1 2.4629 -0.4293 3.2291 30 1 -1.6514 -0.8528 5.4722 31 1 3.5210 -4.3656 -0.3189 32 1 4.9830 -3.3314 -0.3207 33 1 5.9422 -2.5293 1.8170 34 1 5.6005 -3.6075 3.1911 35 1 6.1482 -4.2884 1.6401 36 1 3.1490 -2.2737 3.0781 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379484216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = 37.318788 kcal Electronic energy + Delta-G solvation = -16376.099647 eV Core-core repulsion = 13895.752934 eV Total energy + Delta-G solvation = -2480.346713 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.60370 -36.80076 -32.87085 -32.08856 -31.26211 -29.61610 -27.80333 -26.53611 -25.04871 -22.35433 -21.04631 -20.41780 -18.16705 -17.31085 -16.91941 -15.27731 -14.90447 -14.48632 -13.95947 -13.37933 -13.31633 -12.82788 -12.69874 -12.39766 -12.17566 -11.81074 -11.71756 -11.54555 -11.40833 -11.27828 -11.16536 -10.90633 -10.52374 -10.50609 -10.13254 -10.06317 -9.46541 -8.83192 -8.69330 -7.77998 -6.82761 -6.17484 -4.16964 3.17226 3.24863 3.26588 3.49715 3.72914 4.28222 4.50602 4.99345 5.12025 5.31234 5.42412 5.56222 5.72238 5.79003 5.85326 5.93264 6.08300 6.09689 6.13640 6.24372 6.35583 6.46324 6.46911 6.56154 6.70697 6.75556 6.88763 7.05364 7.17816 7.48829 7.61685 8.01447 8.39912 8.86509 8.92522 9.12086 9.43370 10.95239 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.010603 C = 0.008470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.815251 B = 2640.059706 C = 3305.122342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 C -0.160 4.160 4 N -0.585 5.585 5 C 0.223 3.777 6 C -0.530 4.530 7 H 0.080 0.920 8 C 0.073 3.927 9 N -0.893 5.893 10 Si 0.869 3.131 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.267 1.267 14 C 0.624 3.376 15 N -0.671 5.671 16 C 0.057 3.943 17 C 0.111 3.889 18 H 0.073 0.927 19 C -0.154 4.154 20 N -0.757 5.757 21 H 0.073 0.927 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.020 0.980 30 H 0.265 0.735 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.614 0.010 -4.880 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.058 3.942 3 C -0.219 4.219 4 N -0.305 5.305 5 C 0.102 3.898 6 C -0.569 4.569 7 H 0.098 0.902 8 C -0.130 4.130 9 N -0.531 5.531 10 Si 0.696 3.304 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.262 3.738 15 N -0.419 5.419 16 C -0.074 4.074 17 C 0.003 3.997 18 H 0.091 0.909 19 C -0.212 4.212 20 N -0.405 5.405 21 H 0.092 0.908 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.366 0.167 -5.659 10.944 hybrid contribution 0.376 0.339 2.134 2.193 sum 9.742 0.506 -3.525 10.372 Atomic orbital electron populations 1.22142 0.95204 1.02413 1.01542 1.20765 0.93955 0.91615 0.87835 1.22179 1.00841 0.97164 1.01707 1.45881 1.51642 1.25701 1.07246 1.19559 0.96076 0.95128 0.79087 1.21511 1.06566 1.25928 1.02910 0.90188 1.24901 0.94705 0.95888 0.97519 1.69900 1.19241 1.43044 1.20927 0.86963 0.80555 0.82293 0.80558 1.19989 1.21049 1.19140 1.19449 0.85280 0.84634 0.84431 1.74414 1.31478 1.17299 1.18717 1.22671 0.97948 0.95500 0.91321 1.21993 0.91055 0.89741 0.96905 0.90948 1.22120 0.95866 1.02086 1.01166 1.45876 1.56268 1.30566 1.07821 0.90802 0.93520 0.92636 0.88805 0.93061 0.92266 0.92355 0.95121 0.96252 0.92544 0.91960 0.91856 0.92419 0.92778 0.91770 0.74845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.47 37.16 0.31 -2.61 16 2 C 0.16 3.04 3.30 -67.93 -0.22 2.82 16 3 C -0.16 -2.57 9.17 37.16 0.34 -2.23 16 4 N -0.59 -12.29 2.46 -169.70 -0.42 -12.71 16 5 C 0.22 5.03 3.64 -5.19 -0.02 5.01 16 6 C -0.53 -13.99 8.38 -34.44 -0.29 -14.28 16 7 H 0.08 2.40 7.87 -52.49 -0.41 1.98 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 10 Si 0.87 20.05 27.46 -169.99 -4.67 15.38 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.27 -5.84 6.55 56.52 0.37 -5.47 16 14 C 0.62 12.95 8.18 -322.33 -2.64 10.31 16 15 N -0.67 -13.61 10.36 -61.28 -0.63 -14.24 16 16 C 0.06 0.95 7.69 -3.19 -0.02 0.92 16 17 C 0.11 1.71 4.43 -66.91 -0.30 1.41 16 18 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.15 -1.91 9.42 37.16 0.35 -1.56 16 20 N -0.76 -14.19 5.90 -54.64 -0.32 -14.51 16 21 H 0.07 1.55 6.92 -51.93 -0.36 1.19 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.09 1.79 6.97 -51.93 -0.36 1.43 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.97 6.66 -51.93 -0.35 0.62 16 28 H 0.03 0.68 5.85 -51.93 -0.30 0.38 16 29 H 0.02 0.44 5.82 -51.93 -0.30 0.14 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.95 7.74 -51.93 -0.40 0.55 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 7.79 7.52 -40.82 -0.31 7.48 16 LS Contribution 286.00 15.07 4.31 4.31 Total: -1.00 -29.18 286.00 -9.31 -38.49 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.77 Total: 6.97 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.58 Total: 1.68 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -0.60 Total: -66.83 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.18 -9.31 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379484216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.808 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds