Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47167 * 2 1 4 4 N 1.46505 * 109.47374 * 119.99981 * 2 1 3 5 5 C 1.46499 * 119.99592 * 300.00390 * 4 2 1 6 6 C 1.50701 * 109.47260 * 90.00114 * 5 4 2 7 7 H 1.08002 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99694 * 180.27562 * 6 5 4 9 9 N 1.31523 * 119.99908 * 179.72112 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 359.71709 * 8 6 5 11 11 H 1.48500 * 109.47210 * 90.00069 * 10 8 6 12 12 H 1.48504 * 109.47424 * 210.00300 * 10 8 6 13 13 H 1.48502 * 109.46888 * 330.00390 * 10 8 6 14 14 C 1.37478 * 119.99925 * 119.99587 * 4 2 1 15 15 N 1.29320 * 122.87021 * 0.03354 * 14 4 2 16 16 C 1.46943 * 110.08742 * 179.97438 * 15 14 4 17 17 C 1.54170 * 104.01175 * 359.97438 * 16 15 14 18 18 H 1.08990 * 110.66328 * 118.61054 * 17 16 15 19 19 C 1.52999 * 110.65749 * 241.55871 * 17 16 15 20 20 N 1.36787 * 122.86845 * 179.73593 * 14 4 2 21 21 H 1.09002 * 109.47157 * 299.99805 * 1 2 3 22 22 H 1.09002 * 109.47063 * 59.99930 * 1 2 3 23 23 H 1.09003 * 109.46939 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47157 * 240.00195 * 2 1 3 25 25 H 1.08999 * 109.47356 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47186 * 299.99994 * 3 2 1 27 27 H 1.09002 * 109.46922 * 60.00052 * 3 2 1 28 28 H 1.09000 * 109.47197 * 329.99120 * 5 4 2 29 29 H 1.09007 * 109.46342 * 209.99692 * 5 4 2 30 30 H 0.96995 * 120.00181 * 179.97438 * 9 8 6 31 31 H 1.08997 * 110.52328 * 118.62872 * 16 15 14 32 32 H 1.09001 * 110.52187 * 241.22525 * 16 15 14 33 33 H 1.08998 * 109.47506 * 59.99844 * 19 17 16 34 34 H 1.09002 * 109.46995 * 179.97438 * 19 17 16 35 35 H 1.09003 * 109.46980 * 299.99246 * 19 17 16 36 36 H 0.97003 * 125.80988 * 0.02562 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 0.3830 -0.8389 2.9830 7 1 -0.1178 -1.5523 2.3454 8 6 -0.1532 -0.5169 4.2117 9 7 -1.2744 -1.0790 4.6076 10 14 0.7128 0.7176 5.3143 11 1 0.2130 2.0837 5.0160 12 1 0.4380 0.3894 6.7363 13 1 2.1760 0.6609 5.0671 14 6 2.8087 -1.8084 1.0700 15 7 3.1551 -2.2974 -0.0760 16 6 3.9965 -3.4866 0.1162 17 6 4.0974 -3.6289 1.6480 18 1 3.6719 -4.5775 1.9751 19 6 5.5516 -3.5047 2.1070 20 7 3.3008 -2.4950 2.1459 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 1.5295 0.8907 2.4843 29 1 2.4629 -0.4293 3.2291 30 1 -1.6514 -0.8528 5.4722 31 1 3.5210 -4.3656 -0.3189 32 1 4.9830 -3.3314 -0.3207 33 1 5.9422 -2.5293 1.8170 34 1 5.6005 -3.6075 3.1911 35 1 6.1482 -4.2884 1.6401 36 1 3.1490 -2.2737 3.0781 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379484216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = 19.419163 kcal Electronic energy + Delta-G solvation = -16376.875833 eV Core-core repulsion = 13895.752934 eV Total energy + Delta-G solvation = -2481.122899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05800 -38.32472 -34.85796 -33.48158 -32.81611 -31.11530 -29.50052 -27.95635 -26.45079 -24.15479 -22.52185 -21.76866 -19.70008 -19.00236 -18.83701 -16.65780 -16.53760 -16.16061 -15.45836 -14.85946 -14.80069 -14.55265 -14.10214 -13.92256 -13.54116 -13.32244 -13.23557 -12.90789 -12.76548 -12.65808 -12.61284 -12.47578 -12.13323 -11.98738 -11.89160 -11.66898 -11.44141 -10.77634 -10.29929 -9.27544 -8.39201 -8.26667 -6.31936 1.37331 1.38285 1.47552 1.99209 2.20970 2.33624 3.03062 3.05899 3.74098 4.09670 4.17176 4.27243 4.36755 4.46227 4.56070 4.75339 4.78505 4.82835 4.84695 4.87418 4.92292 5.03748 5.06439 5.10801 5.24946 5.33703 5.43466 5.47237 5.57883 5.67711 5.95481 6.36374 6.49299 6.72989 7.25911 7.36777 7.61080 8.89157 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.010603 C = 0.008470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.815251 B = 2640.059706 C = 3305.122342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.158 3.842 3 C -0.150 4.150 4 N -0.595 5.595 5 C 0.235 3.765 6 C -0.522 4.522 7 H 0.028 0.972 8 C 0.015 3.985 9 N -0.945 5.945 10 Si 0.940 3.060 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.243 1.243 14 C 0.607 3.393 15 N -0.691 5.691 16 C 0.052 3.948 17 C 0.108 3.892 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.763 5.763 21 H 0.048 0.952 22 H 0.080 0.920 23 H 0.023 0.977 24 H 0.091 0.909 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.028 0.972 30 H 0.266 0.734 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.845 1.031 -4.955 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.054 3.946 3 C -0.209 4.209 4 N -0.315 5.315 5 C 0.113 3.887 6 C -0.561 4.561 7 H 0.047 0.953 8 C -0.183 4.183 9 N -0.586 5.586 10 Si 0.764 3.236 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.166 1.166 14 C 0.244 3.756 15 N -0.439 5.439 16 C -0.079 4.079 17 C 0.002 3.998 18 H 0.097 0.903 19 C -0.201 4.201 20 N -0.411 5.411 21 H 0.068 0.932 22 H 0.099 0.901 23 H 0.042 0.958 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 11.632 1.169 -5.773 13.039 hybrid contribution -0.371 -0.106 2.035 2.071 sum 11.261 1.063 -3.738 11.913 Atomic orbital electron populations 1.22037 0.95853 1.00415 1.01944 1.20924 0.93355 0.93299 0.86979 1.22088 1.00986 0.94977 1.02805 1.45952 1.52091 1.26338 1.07148 1.19305 0.94048 0.95181 0.80208 1.21568 1.07693 1.24675 1.02144 0.95318 1.25782 0.95309 0.98049 0.99194 1.70069 1.21447 1.45377 1.21682 0.85823 0.80535 0.79456 0.77806 1.19072 1.21254 1.16588 1.19693 0.85757 0.84873 0.85273 1.74347 1.31935 1.18593 1.19018 1.22817 0.98289 0.94337 0.92445 1.22216 0.92632 0.88977 0.96009 0.90281 1.22031 0.93698 1.02501 1.01857 1.46057 1.56534 1.31185 1.07324 0.93245 0.90102 0.95790 0.89141 0.92690 0.89429 0.92946 0.94014 0.95432 0.92541 0.91504 0.90039 0.93365 0.91970 0.89101 0.75241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 8.47 71.98 0.61 -4.88 16 2 C 0.16 5.80 3.30 44.99 0.15 5.95 16 3 C -0.15 -4.46 9.17 71.98 0.66 -3.80 16 4 N -0.60 -24.83 2.46 -690.80 -1.70 -26.53 16 5 C 0.24 10.45 3.64 85.63 0.31 10.76 16 6 C -0.52 -28.18 8.38 25.60 0.21 -27.96 16 7 H 0.03 1.81 7.87 -2.91 -0.02 1.79 16 8 C 0.01 0.80 5.47 84.65 0.46 1.27 16 9 N -0.95 -57.00 13.96 21.45 0.30 -56.70 16 10 Si 0.94 40.86 27.46 68.60 1.88 42.74 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.24 -9.53 6.55 99.48 0.65 -8.87 16 14 C 0.61 24.91 8.18 261.32 2.14 27.05 16 15 N -0.69 -27.51 10.36 -347.79 -3.60 -31.12 16 16 C 0.05 1.65 7.69 86.69 0.67 2.31 16 17 C 0.11 3.15 4.43 45.24 0.20 3.35 16 18 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 19 C -0.14 -3.15 9.42 71.98 0.68 -2.47 16 20 N -0.76 -28.00 5.90 -326.80 -1.93 -29.93 16 21 H 0.05 2.10 6.92 -2.39 -0.02 2.08 16 22 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 23 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.09 3.39 6.97 -2.39 -0.02 3.37 16 25 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.05 1.61 6.66 -2.39 -0.02 1.60 16 28 H 0.04 1.78 5.85 -2.39 -0.01 1.77 16 29 H 0.03 1.20 5.82 -2.38 -0.01 1.18 16 30 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.26 7.74 -2.39 -0.02 2.24 16 33 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 15.19 7.52 -92.71 -0.70 14.49 16 Total: -1.00 -64.50 286.00 1.35 -63.15 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.30 Total: 26.81 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 6.09 Total: 11.58 kcal Atomic # 7 Polarization: -137.35 SS G_CDS: -6.93 Total: -144.28 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.88 Total: 42.74 kcal Total: -64.50 1.35 -63.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379484216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.569 kcal (2) G-P(sol) polarization free energy of solvation -64.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds