Wall clock time and date at job start Mon Mar 30 2020 03:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46977 * 2 1 4 4 C 1.52999 * 112.85003 * 53.14972 * 3 2 1 5 5 N 1.46496 * 109.47657 * 196.86964 * 4 3 2 6 6 C 1.36936 * 119.99965 * 90.44052 * 5 4 3 7 7 H 1.07999 * 120.00024 * 218.18470 * 6 5 4 8 8 C 1.38816 * 119.99937 * 38.18639 * 6 5 4 9 9 N 1.31615 * 120.00001 * 211.47618 * 8 6 5 10 10 Si 1.86793 * 119.99934 * 31.47646 * 8 6 5 11 11 H 1.48508 * 109.47132 * 93.21329 * 10 8 6 12 12 H 1.48496 * 109.47371 * 213.21257 * 10 8 6 13 13 H 1.48502 * 109.47317 * 333.21538 * 10 8 6 14 14 C 1.46498 * 120.00362 * 270.44832 * 5 4 3 15 15 C 1.52999 * 109.47514 * 123.30109 * 14 5 4 16 16 C 1.53008 * 109.46953 * 243.30462 * 14 5 4 17 17 C 1.53780 * 113.61688 * 184.34697 * 3 2 1 18 18 C 1.53781 * 87.08299 * 89.11767 * 17 3 2 19 19 C 1.53783 * 87.17211 * 25.38994 * 18 17 3 20 20 H 1.09000 * 109.47501 * 54.49801 * 1 2 3 21 21 H 1.09003 * 109.46629 * 174.49555 * 1 2 3 22 22 H 1.08993 * 109.47500 * 294.49327 * 1 2 3 23 23 H 1.09007 * 109.47357 * 240.00518 * 2 1 3 24 24 H 1.08994 * 109.47258 * 119.99711 * 2 1 3 25 25 H 1.09000 * 109.47415 * 316.87347 * 4 3 2 26 26 H 1.09005 * 109.46997 * 76.87110 * 4 3 2 27 27 H 0.96996 * 120.00226 * 180.02562 * 9 8 6 28 28 H 1.09004 * 109.46940 * 3.29502 * 14 5 4 29 29 H 1.08993 * 109.46943 * 65.67885 * 15 14 5 30 30 H 1.09005 * 109.46894 * 185.67873 * 15 14 5 31 31 H 1.08998 * 109.47233 * 305.67182 * 15 14 5 32 32 H 1.08998 * 109.47278 * 59.99452 * 16 14 5 33 33 H 1.08998 * 109.46976 * 179.97438 * 16 14 5 34 34 H 1.08994 * 109.46541 * 299.99276 * 16 14 5 35 35 H 1.08994 * 113.61509 * 334.56718 * 17 3 2 36 36 H 1.09002 * 113.68799 * 203.67675 * 17 3 2 37 37 H 1.08997 * 113.61378 * 139.97780 * 18 17 3 38 38 H 1.08996 * 113.61473 * 270.80495 * 18 17 3 39 39 H 1.09007 * 113.60938 * 89.15772 * 19 18 17 40 40 H 1.08997 * 113.61808 * 220.06039 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4408 2.2845 1.1282 5 7 1.6433 3.7059 0.8373 6 6 0.6962 4.4029 0.1355 7 1 0.9982 5.1464 -0.5873 8 6 -0.6520 4.1537 0.3531 9 7 -1.5139 4.2910 -0.6320 10 14 -1.2427 3.6236 2.0440 11 1 -1.6634 4.8187 2.8186 12 1 -2.3945 2.6977 1.8981 13 1 -0.1400 2.9329 2.7596 14 6 2.8590 4.3818 1.2971 15 6 3.5806 5.0038 0.0999 16 6 2.4855 5.4804 2.2946 17 6 3.5699 1.5551 -0.1068 18 6 3.3840 1.5646 -1.6333 19 6 1.9718 2.1187 -1.3814 20 1 -0.3634 0.5968 -0.8366 21 1 -0.3633 -1.0230 -0.0986 22 1 -0.3634 0.4260 0.9351 23 1 1.8934 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 0.3734 2.0784 1.2079 26 1 1.9306 2.0328 2.0689 27 1 -2.4560 4.1173 -0.4799 28 1 3.5153 3.6590 1.7818 29 1 2.9648 5.7971 -0.3234 30 1 4.5343 5.4189 0.4262 31 1 3.7572 4.2383 -0.6557 32 1 1.9714 5.0373 3.1474 33 1 3.3901 5.9830 2.6370 34 1 1.8292 6.2031 1.8100 35 1 4.0992 0.6770 0.2631 36 1 3.9691 2.4884 0.2902 37 1 4.0419 2.2640 -2.1489 38 1 3.3895 0.5704 -2.0800 39 1 1.9320 3.2070 -1.3333 40 1 1.2127 1.6951 -2.0390 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379628822.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:37 Heat of formation + Delta-G solvation = 33.492397 kcal Electronic energy + Delta-G solvation = -17562.998528 eV Core-core repulsion = 15186.026234 eV Total energy + Delta-G solvation = -2376.972294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.33759 -35.84128 -32.46431 -31.85452 -30.33904 -26.71468 -26.29076 -24.65998 -23.97385 -22.81396 -21.24308 -19.33869 -17.39666 -16.31248 -15.31767 -14.76400 -14.57743 -14.06023 -13.51970 -13.32999 -13.16528 -12.58021 -12.16779 -12.02102 -11.90109 -11.54908 -11.38236 -11.18942 -11.01030 -10.77164 -10.61057 -10.45912 -10.38326 -10.29934 -10.04595 -9.91921 -9.45330 -9.36436 -9.13532 -8.93903 -8.30306 -6.62633 -5.98141 -3.26770 3.40698 3.53306 3.58562 4.62658 4.99671 5.27204 5.39402 5.42459 5.48802 5.63092 5.85670 5.86575 5.91157 6.06694 6.10940 6.21860 6.25694 6.32295 6.36959 6.39216 6.46122 6.51306 6.59983 6.67584 6.69056 6.72088 6.75311 6.76741 6.88162 6.98271 7.11781 7.16268 7.21891 7.36335 7.66593 8.14261 8.48717 9.13216 9.83667 10.28669 11.17863 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.016140 C = 0.011492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.922469 B = 1734.443425 C = 2435.966032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.103 4.103 4 C 0.161 3.839 5 N -0.595 5.595 6 C -0.260 4.260 7 H 0.076 0.924 8 C 0.049 3.951 9 N -0.885 5.885 10 Si 0.842 3.158 11 H -0.294 1.294 12 H -0.297 1.297 13 H -0.261 1.261 14 C 0.165 3.835 15 C -0.157 4.157 16 C -0.156 4.156 17 C -0.133 4.133 18 C -0.149 4.149 19 C -0.109 4.109 20 H 0.063 0.937 21 H 0.041 0.959 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.034 0.966 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.035 0.965 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.120 0.880 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -5.186 1.858 9.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.106 4.106 4 C 0.035 3.965 5 N -0.317 5.317 6 C -0.388 4.388 7 H 0.093 0.907 8 C -0.152 4.152 9 N -0.525 5.525 10 Si 0.670 3.330 11 H -0.222 1.222 12 H -0.224 1.224 13 H -0.186 1.186 14 C 0.058 3.942 15 C -0.216 4.216 16 C -0.215 4.215 17 C -0.170 4.170 18 C -0.186 4.186 19 C -0.146 4.146 20 H 0.082 0.918 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.138 0.862 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.957 -5.182 1.792 9.664 hybrid contribution -0.596 -0.319 1.016 1.220 sum 7.361 -5.501 2.808 9.609 Atomic orbital electron populations 1.21765 0.95980 1.00197 1.02772 1.21215 0.95782 0.95752 1.00358 1.22512 0.94564 0.94350 0.99125 1.21122 0.98685 0.83672 0.92981 1.44171 1.19415 1.03698 1.64388 1.18462 0.84757 1.20721 1.14849 0.90667 1.25419 0.96017 0.97598 0.96209 1.70018 1.03045 1.49486 1.29914 0.87500 0.78203 0.77832 0.89443 1.22224 1.22428 1.18557 1.20416 0.88599 0.92740 0.92405 1.22223 0.98353 1.01279 0.99725 1.22188 0.99716 1.00129 0.99477 1.23034 0.96687 1.01001 0.96274 1.22852 0.99783 0.99761 0.96220 1.23057 0.93355 1.03778 0.94376 0.91770 0.93957 0.92924 0.92824 0.93087 0.92315 0.95193 0.93003 0.93376 0.92479 0.94664 0.92674 0.94042 0.94626 0.91969 0.93584 0.89575 0.92946 0.92012 0.86184 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.27 37.16 0.34 -2.30 16 2 C -0.09 -1.55 5.32 -26.73 -0.14 -1.70 16 3 C -0.10 -1.92 0.93 -153.60 -0.14 -2.06 16 4 C 0.16 3.42 3.55 -4.04 -0.01 3.40 16 5 N -0.59 -13.12 1.15 -165.66 -0.19 -13.31 16 6 C -0.26 -6.69 6.39 -15.06 -0.10 -6.78 16 7 H 0.08 2.11 7.03 -52.49 -0.37 1.74 16 8 C 0.05 1.34 5.09 -17.43 -0.09 1.25 16 9 N -0.88 -25.87 13.97 55.49 0.78 -25.09 16 10 Si 0.84 21.30 26.31 -169.99 -4.47 16.83 16 11 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 12 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 13 H -0.26 -6.32 5.68 56.52 0.32 -6.00 16 14 C 0.16 3.16 2.33 -67.93 -0.16 3.00 16 15 C -0.16 -2.78 8.39 37.16 0.31 -2.47 16 16 C -0.16 -2.92 9.21 37.16 0.34 -2.58 16 17 C -0.13 -2.21 6.97 -25.92 -0.18 -2.39 16 18 C -0.15 -2.46 7.60 -25.92 -0.20 -2.65 16 19 C -0.11 -2.15 6.54 -25.82 -0.17 -2.32 16 20 H 0.06 1.26 7.55 -51.93 -0.39 0.87 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.99 6.58 -51.93 -0.34 0.65 16 23 H 0.05 0.84 7.32 -51.92 -0.38 0.46 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.36 2.14 -51.93 -0.11 1.25 16 26 H 0.03 0.61 7.96 -51.93 -0.41 0.20 16 27 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.05 0.87 6.82 -51.93 -0.35 0.51 16 29 H 0.06 1.10 7.17 -51.93 -0.37 0.72 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.99 6.07 -51.93 -0.32 0.67 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 1.27 7.73 -51.93 -0.40 0.87 16 35 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.09 1.47 4.14 -51.93 -0.21 1.25 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.95 7.62 -51.93 -0.40 0.55 16 39 H 0.12 2.73 4.45 -51.92 -0.23 2.50 16 40 H 0.05 0.97 7.63 -51.93 -0.40 0.57 16 LS Contribution 288.41 15.07 4.35 4.35 Total: -1.00 -27.07 288.41 -6.59 -33.66 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.86 Total: 1.16 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -0.19 Total: -17.59 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.58 Total: -38.41 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.47 Total: 16.83 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.07 -6.59 -33.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379628822.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.154 kcal (2) G-P(sol) polarization free energy of solvation -27.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds