Wall clock time and date at job start Mon Mar 30 2020 03:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47131 * 2 1 4 4 N 1.46900 * 115.54599 * 300.95320 * 3 2 1 5 5 C 1.46901 * 110.99892 * 176.15269 * 4 3 2 6 6 C 1.52999 * 109.47153 * 173.97600 * 5 4 3 7 7 C 1.52998 * 109.47614 * 300.00521 * 6 5 4 8 8 C 1.53004 * 109.46789 * 60.00575 * 6 5 4 9 9 C 1.53001 * 109.46866 * 180.02562 * 6 5 4 10 10 C 1.50700 * 109.46546 * 180.02562 * 9 6 5 11 11 H 1.07998 * 120.00825 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99585 * 180.02562 * 10 9 6 13 13 N 1.31512 * 120.00139 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99772 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47413 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46978 * 120.00241 * 14 12 10 17 17 H 1.48503 * 109.47218 * 239.99946 * 14 12 10 18 18 C 1.52999 * 117.49772 * 86.62370 * 3 2 1 19 19 C 1.52992 * 117.50083 * 155.28616 * 3 2 1 20 20 H 1.08995 * 109.46786 * 178.53161 * 1 2 3 21 21 H 1.09000 * 109.46958 * 298.53028 * 1 2 3 22 22 H 1.08993 * 109.47296 * 58.52918 * 1 2 3 23 23 H 1.08999 * 109.47505 * 239.99541 * 2 1 3 24 24 H 1.09000 * 109.46810 * 119.99619 * 2 1 3 25 25 H 1.00905 * 110.99774 * 52.20394 * 4 3 2 26 26 H 1.08997 * 109.47424 * 293.97979 * 5 4 3 27 27 H 1.09003 * 109.46695 * 53.98076 * 5 4 3 28 28 H 1.09003 * 109.46559 * 59.99601 * 7 6 5 29 29 H 1.08993 * 109.47267 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.46782 * 300.00313 * 7 6 5 31 31 H 1.08997 * 109.47297 * 59.99922 * 8 6 5 32 32 H 1.09002 * 109.47363 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.46895 * 299.99893 * 8 6 5 34 34 H 1.08997 * 109.47549 * 300.00280 * 9 6 5 35 35 H 1.08996 * 109.47139 * 60.00836 * 9 6 5 36 36 H 0.97003 * 119.99877 * 179.97438 * 13 12 10 37 37 H 1.09010 * 117.49284 * 215.00042 * 18 3 2 38 38 H 1.08993 * 117.50138 * 0.02653 * 18 3 2 39 39 H 1.08999 * 117.50086 * 359.97360 * 19 3 2 40 40 H 1.08998 * 117.50061 * 144.97597 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.6085 2.2670 -1.1366 5 6 2.0771 3.6516 -0.9906 6 6 1.7401 4.4404 -2.2575 7 6 2.4294 3.7929 -3.4601 8 6 0.2254 4.4349 -2.4738 9 6 2.2287 5.8823 -2.1055 10 6 1.8962 6.6594 -3.3532 11 1 1.3868 6.1737 -4.1723 12 6 2.2422 7.9907 -3.4489 13 7 2.8629 8.5821 -2.4516 14 14 1.8293 8.9541 -4.9951 15 1 1.1361 8.0654 -5.9619 16 1 0.9434 10.0938 -4.6464 17 1 3.0808 9.4692 -5.6064 18 6 2.2002 2.1352 1.3548 19 6 3.4378 1.6977 0.5674 20 1 -0.3633 -1.0273 -0.0263 21 1 -0.3633 0.4908 0.9029 22 1 -0.3633 0.5365 -0.8764 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.6060 2.2343 -1.2470 26 1 1.5860 4.1130 -0.1338 27 1 3.1562 3.6555 -0.8365 28 1 2.0815 2.7655 -3.5684 29 1 2.1888 4.3546 -4.3627 30 1 3.5083 3.7968 -3.3059 31 1 -0.2657 4.8963 -1.6170 32 1 -0.0149 4.9972 -3.3761 33 1 -0.1223 3.4076 -2.5821 34 1 1.7380 6.3440 -1.2487 35 1 3.3078 5.8859 -1.9517 36 1 3.1066 9.5186 -2.5191 37 1 1.9853 3.2028 1.4026 38 1 1.9426 1.5632 2.2461 39 1 3.9939 0.8380 0.9411 40 1 4.0373 2.4771 0.0971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379720810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:12 Heat of formation + Delta-G solvation = 0.608207 kcal Electronic energy + Delta-G solvation = -16271.617787 eV Core-core repulsion = 13893.219528 eV Total energy + Delta-G solvation = -2378.398260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.17271 -36.49377 -32.67723 -32.01241 -30.97624 -26.88502 -26.30167 -25.50766 -23.81576 -22.44717 -22.15057 -18.95558 -17.99160 -16.23669 -15.94155 -15.25424 -14.48984 -14.27189 -14.02529 -13.52271 -13.12495 -12.94166 -12.57113 -12.28160 -11.98052 -11.94957 -11.39053 -11.33084 -11.15183 -10.96579 -10.81669 -10.73046 -10.50054 -10.33103 -10.25745 -10.06551 -9.94133 -9.62503 -8.99275 -8.80034 -8.30452 -7.84903 -5.94767 -3.94690 3.33529 3.41350 3.44996 3.89543 4.37482 4.52228 4.72571 4.88595 5.02953 5.25404 5.41125 5.45046 5.52549 5.58748 5.79738 5.82737 5.85975 5.90551 6.01719 6.04660 6.09731 6.24342 6.25564 6.34782 6.39930 6.55651 6.70021 6.82657 6.86007 7.23671 7.27044 7.29142 7.44479 7.69671 7.73592 7.87748 8.05756 8.50396 9.10942 9.68105 11.16999 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047539 B = 0.005870 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.844555 B = 4768.540018 C = 5024.050622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 C 0.058 3.942 4 N -0.645 5.645 5 C 0.063 3.937 6 C -0.056 4.056 7 C -0.116 4.116 8 C -0.129 4.129 9 C 0.033 3.967 10 C -0.505 4.505 11 H 0.060 0.940 12 C 0.054 3.946 13 N -0.898 5.898 14 Si 0.887 3.113 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.285 1.285 18 C -0.226 4.226 19 C -0.174 4.174 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.341 0.659 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.033 0.967 34 H 0.012 0.988 35 H 0.014 0.986 36 H 0.258 0.742 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.073 -14.774 5.231 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.035 4.035 4 N -0.276 5.276 5 C -0.065 4.065 6 C -0.057 4.057 7 C -0.173 4.173 8 C -0.186 4.186 9 C -0.004 4.004 10 C -0.543 4.543 11 H 0.078 0.922 12 C -0.146 4.146 13 N -0.538 5.538 14 Si 0.716 3.284 15 H -0.198 1.198 16 H -0.212 1.212 17 H -0.212 1.212 18 C -0.265 4.265 19 C -0.212 4.212 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.162 0.838 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.499 -14.794 4.847 15.767 hybrid contribution -0.631 1.159 0.034 1.320 sum -3.130 -13.635 4.881 14.817 Atomic orbital electron populations 1.21737 0.95684 1.01476 1.02037 1.20965 0.95761 0.92763 1.02092 1.21685 0.99086 0.94168 0.88541 1.60346 1.18060 1.11013 1.38138 1.22272 1.00113 0.86298 0.97808 1.20615 0.94970 0.97236 0.92859 1.21596 0.99069 0.98603 0.98050 1.21766 0.95964 0.98853 1.02019 1.19130 0.96092 0.88201 0.97012 1.21277 1.36851 0.94672 1.01547 0.92225 1.25021 0.95516 0.97964 0.96135 1.69979 1.41117 1.11502 1.31195 0.86609 0.78021 0.80108 0.83710 1.19761 1.21201 1.21163 1.23632 1.04086 1.01937 0.96873 1.23184 0.91080 1.03441 1.03469 0.92730 0.92892 0.92247 0.90916 0.91766 0.83773 0.95482 0.91189 0.93824 0.92718 0.94287 0.94175 0.91746 0.94785 0.96966 0.96738 0.93243 0.88515 0.89388 0.89017 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.69 37.16 0.36 -1.11 16 2 C -0.08 -0.83 6.00 -26.73 -0.16 -0.99 16 3 C 0.06 0.75 2.70 -131.60 -0.36 0.40 16 4 N -0.65 -9.65 5.83 -99.97 -0.58 -10.24 16 5 C 0.06 1.12 3.66 -3.82 -0.01 1.10 16 6 C -0.06 -1.14 0.60 -154.51 -0.09 -1.23 16 7 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 8 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 9 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 10 C -0.51 -13.93 7.65 -34.44 -0.26 -14.20 16 11 H 0.06 1.61 5.68 -52.49 -0.30 1.31 16 12 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 13 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 14 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 C -0.23 -2.89 9.53 -26.69 -0.25 -3.14 16 19 C -0.17 -2.26 9.59 -26.70 -0.26 -2.52 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.61 6.88 -51.93 -0.36 0.25 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 25 H 0.34 4.88 5.55 -39.29 -0.22 4.67 16 26 H 0.03 0.49 6.59 -51.93 -0.34 0.15 16 27 H 0.07 1.29 5.94 -51.93 -0.31 0.98 16 28 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 29 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 33 H 0.03 0.55 6.72 -51.93 -0.35 0.20 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.10 1.38 6.25 -51.92 -0.32 1.06 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 1.44 6.24 -51.93 -0.32 1.11 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -28.95 305.23 -7.89 -36.84 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.96 Total: 2.04 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -0.65 Total: -23.64 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.15 Total: -36.56 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.95 -7.89 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379720810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.447 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds