Wall clock time and date at job start Mon Mar 30 2020 03:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47131 * 2 1 4 4 N 1.46900 * 115.54599 * 300.95320 * 3 2 1 5 5 C 1.46901 * 110.99892 * 176.15269 * 4 3 2 6 6 C 1.52999 * 109.47153 * 173.97600 * 5 4 3 7 7 C 1.52998 * 109.47614 * 300.00521 * 6 5 4 8 8 C 1.53004 * 109.46789 * 60.00575 * 6 5 4 9 9 C 1.53001 * 109.46866 * 180.02562 * 6 5 4 10 10 C 1.50700 * 109.46546 * 180.02562 * 9 6 5 11 11 H 1.07998 * 120.00825 * 0.02562 * 10 9 6 12 12 C 1.37884 * 119.99585 * 180.02562 * 10 9 6 13 13 N 1.31512 * 120.00139 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99772 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47413 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.46978 * 120.00241 * 14 12 10 17 17 H 1.48503 * 109.47218 * 239.99946 * 14 12 10 18 18 C 1.52999 * 117.49772 * 86.62370 * 3 2 1 19 19 C 1.52992 * 117.50083 * 155.28616 * 3 2 1 20 20 H 1.08995 * 109.46786 * 178.53161 * 1 2 3 21 21 H 1.09000 * 109.46958 * 298.53028 * 1 2 3 22 22 H 1.08993 * 109.47296 * 58.52918 * 1 2 3 23 23 H 1.08999 * 109.47505 * 239.99541 * 2 1 3 24 24 H 1.09000 * 109.46810 * 119.99619 * 2 1 3 25 25 H 1.00905 * 110.99774 * 52.20394 * 4 3 2 26 26 H 1.08997 * 109.47424 * 293.97979 * 5 4 3 27 27 H 1.09003 * 109.46695 * 53.98076 * 5 4 3 28 28 H 1.09003 * 109.46559 * 59.99601 * 7 6 5 29 29 H 1.08993 * 109.47267 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.46782 * 300.00313 * 7 6 5 31 31 H 1.08997 * 109.47297 * 59.99922 * 8 6 5 32 32 H 1.09002 * 109.47363 * 179.97438 * 8 6 5 33 33 H 1.08998 * 109.46895 * 299.99893 * 8 6 5 34 34 H 1.08997 * 109.47549 * 300.00280 * 9 6 5 35 35 H 1.08996 * 109.47139 * 60.00836 * 9 6 5 36 36 H 0.97003 * 119.99877 * 179.97438 * 13 12 10 37 37 H 1.09010 * 117.49284 * 215.00042 * 18 3 2 38 38 H 1.08993 * 117.50138 * 0.02653 * 18 3 2 39 39 H 1.08999 * 117.50086 * 359.97360 * 19 3 2 40 40 H 1.08998 * 117.50061 * 144.97597 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.6085 2.2670 -1.1366 5 6 2.0771 3.6516 -0.9906 6 6 1.7401 4.4404 -2.2575 7 6 2.4294 3.7929 -3.4601 8 6 0.2254 4.4349 -2.4738 9 6 2.2287 5.8823 -2.1055 10 6 1.8962 6.6594 -3.3532 11 1 1.3868 6.1737 -4.1723 12 6 2.2422 7.9907 -3.4489 13 7 2.8629 8.5821 -2.4516 14 14 1.8293 8.9541 -4.9951 15 1 1.1361 8.0654 -5.9619 16 1 0.9434 10.0938 -4.6464 17 1 3.0808 9.4692 -5.6064 18 6 2.2002 2.1352 1.3548 19 6 3.4378 1.6977 0.5674 20 1 -0.3633 -1.0273 -0.0263 21 1 -0.3633 0.4908 0.9029 22 1 -0.3633 0.5365 -0.8764 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 0.6060 2.2343 -1.2470 26 1 1.5860 4.1130 -0.1338 27 1 3.1562 3.6555 -0.8365 28 1 2.0815 2.7655 -3.5684 29 1 2.1888 4.3546 -4.3627 30 1 3.5083 3.7968 -3.3059 31 1 -0.2657 4.8963 -1.6170 32 1 -0.0149 4.9972 -3.3761 33 1 -0.1223 3.4076 -2.5821 34 1 1.7380 6.3440 -1.2487 35 1 3.3078 5.8859 -1.9517 36 1 3.1066 9.5186 -2.5191 37 1 1.9853 3.2028 1.4026 38 1 1.9426 1.5632 2.2461 39 1 3.9939 0.8380 0.9411 40 1 4.0373 2.4771 0.0971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379720810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:11 Heat of formation + Delta-G solvation = -15.882319 kcal Electronic energy + Delta-G solvation = -16272.332870 eV Core-core repulsion = 13893.219528 eV Total energy + Delta-G solvation = -2379.113343 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36814 -38.05501 -34.67993 -32.90103 -32.42997 -28.90789 -27.90364 -26.96626 -25.07887 -24.01789 -23.24416 -20.03283 -19.63262 -18.34840 -17.18615 -16.59387 -16.29601 -15.60485 -15.12717 -14.78588 -14.64339 -14.54972 -13.91998 -13.75170 -13.51397 -13.19591 -12.92366 -12.70689 -12.66545 -12.36689 -12.27472 -12.25718 -12.03158 -12.01514 -11.76916 -11.50394 -11.21845 -11.04395 -10.81579 -10.73578 -10.52201 -9.07081 -8.14921 -6.22119 1.39882 1.40790 1.53244 2.43184 2.85484 3.19090 3.22476 3.78359 3.88590 4.02344 4.10681 4.23866 4.38453 4.44702 4.60079 4.68025 4.69639 4.73867 4.82412 4.91438 5.03970 5.07735 5.10809 5.17594 5.19862 5.20691 5.24349 5.30249 5.47848 5.50772 5.52509 5.57184 5.65727 5.85601 5.91602 6.10746 6.36001 6.53031 6.93073 7.45407 8.97806 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.047539 B = 0.005870 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.844555 B = 4768.540018 C = 5024.050622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.073 4.073 3 C 0.054 3.946 4 N -0.643 5.643 5 C 0.079 3.921 6 C -0.053 4.053 7 C -0.106 4.106 8 C -0.122 4.122 9 C 0.040 3.960 10 C -0.513 4.513 11 H 0.067 0.933 12 C -0.005 4.005 13 N -0.939 5.939 14 Si 0.958 3.042 15 H -0.260 1.260 16 H -0.282 1.282 17 H -0.282 1.282 18 C -0.223 4.223 19 C -0.180 4.180 20 H 0.071 0.929 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.347 0.653 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.039 0.961 30 H 0.027 0.973 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.067 0.933 34 H -0.017 1.017 35 H -0.018 1.018 36 H 0.260 0.740 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.139 -16.706 4.676 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 C -0.038 4.038 4 N -0.274 5.274 5 C -0.050 4.050 6 C -0.054 4.054 7 C -0.163 4.163 8 C -0.179 4.179 9 C 0.002 3.998 10 C -0.551 4.551 11 H 0.085 0.915 12 C -0.202 4.202 13 N -0.580 5.580 14 Si 0.783 3.217 15 H -0.184 1.184 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.263 4.263 19 C -0.217 4.217 20 H 0.090 0.910 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.169 0.831 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.001 0.999 35 H 0.000 1.000 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.576 -16.747 4.288 17.653 hybrid contribution -0.269 1.739 0.264 1.779 sum -3.845 -15.008 4.552 16.147 Atomic orbital electron populations 1.21732 0.94909 1.02491 1.01675 1.20990 0.96372 0.90708 1.02988 1.21917 0.99005 0.95183 0.87714 1.60260 1.18498 1.09136 1.39532 1.21922 0.99363 0.87793 0.95945 1.20482 0.96082 0.94270 0.94552 1.21496 0.98372 0.99630 0.96850 1.21678 0.94526 1.00687 1.00993 1.19010 0.93787 0.91663 0.95324 1.21640 1.36214 0.95060 1.02165 0.91520 1.25940 0.95470 0.99308 0.99449 1.70122 1.42513 1.11913 1.33495 0.85503 0.77855 0.78588 0.79759 1.18372 1.20760 1.20849 1.23611 1.03967 1.01003 0.97702 1.23234 0.91181 1.03693 1.03624 0.91048 0.92961 0.92928 0.90833 0.90055 0.83077 0.96345 0.92414 0.91341 0.94165 0.95337 0.94553 0.93352 0.91397 0.99915 0.99971 0.93166 0.90615 0.87290 0.86766 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.69 71.98 0.70 -1.74 16 2 C -0.07 -1.31 6.00 30.60 0.18 -1.13 16 3 C 0.05 1.30 2.70 3.53 0.01 1.31 16 4 N -0.64 -18.25 5.83 -470.18 -2.74 -20.99 16 5 C 0.08 2.80 3.66 86.30 0.32 3.11 16 6 C -0.05 -2.18 0.60 -52.18 -0.03 -2.21 16 7 C -0.11 -4.14 8.06 71.98 0.58 -3.56 16 8 C -0.12 -4.47 7.89 71.98 0.57 -3.90 16 9 C 0.04 2.11 4.04 29.85 0.12 2.23 16 10 C -0.51 -28.76 7.65 25.60 0.20 -28.57 16 11 H 0.07 3.59 5.68 -2.91 -0.02 3.57 16 12 C -0.01 -0.30 5.46 84.66 0.46 0.17 16 13 N -0.94 -58.13 13.29 21.45 0.28 -57.85 16 14 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 C -0.22 -5.43 9.53 30.62 0.29 -5.14 16 19 C -0.18 -4.45 9.59 30.62 0.29 -4.16 16 20 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 21 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.05 0.92 6.88 -2.39 -0.02 0.90 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.08 1.22 8.11 -2.39 -0.02 1.20 16 25 H 0.35 9.14 5.55 -89.69 -0.50 8.64 16 26 H 0.02 0.68 6.59 -2.39 -0.02 0.67 16 27 H 0.06 2.19 5.94 -2.39 -0.01 2.18 16 28 H 0.07 2.32 7.60 -2.39 -0.02 2.30 16 29 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.92 6.62 -2.39 -0.02 1.91 16 33 H 0.07 2.02 6.72 -2.39 -0.02 2.01 16 34 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 37 H 0.08 2.17 6.25 -2.38 -0.01 2.16 16 38 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.08 2.27 6.24 -2.39 -0.01 2.26 16 Total: -1.00 -63.04 305.23 3.76 -59.29 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.50 Total: 16.25 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 3.69 Total: -43.59 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -2.46 Total: -78.84 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -63.04 3.76 -59.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379720810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.404 kcal (2) G-P(sol) polarization free energy of solvation -63.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds