Wall clock time and date at job start Mon Mar 30 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46987 * 2 1 4 4 C 1.53009 * 113.25490 * 47.04730 * 3 2 1 5 5 C 1.53509 * 114.17620 * 179.97438 * 3 2 1 6 6 N 1.47486 * 87.92858 * 87.81482 * 5 3 2 7 7 C 1.46898 * 110.99742 * 138.70822 * 6 5 3 8 8 C 1.53006 * 109.47006 * 169.99744 * 7 6 5 9 9 C 1.52997 * 109.47127 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47131 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47188 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00218 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00270 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46756 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46933 * 120.00262 * 15 13 11 18 18 H 1.48498 * 109.47326 * 240.00701 * 15 13 11 19 19 C 1.47480 * 87.83685 * 27.01266 * 6 5 3 20 20 H 1.09009 * 109.46817 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47748 * 299.99874 * 1 2 3 22 22 H 1.09003 * 109.47539 * 59.99895 * 1 2 3 23 23 H 1.08997 * 109.47265 * 240.00239 * 2 1 3 24 24 H 1.08992 * 109.47288 * 119.99618 * 2 1 3 25 25 H 1.08998 * 109.47045 * 192.95316 * 4 3 2 26 26 H 1.08998 * 109.47350 * 312.95113 * 4 3 2 27 27 H 1.08998 * 109.46653 * 72.95613 * 4 3 2 28 28 H 1.09004 * 113.47355 * 333.05165 * 5 3 2 29 29 H 1.08995 * 113.48490 * 202.57817 * 5 3 2 30 30 H 1.09001 * 109.47062 * 49.99998 * 7 6 5 31 31 H 1.08993 * 109.47084 * 289.99446 * 7 6 5 32 32 H 1.09001 * 109.46801 * 300.00064 * 8 7 6 33 33 H 1.09001 * 109.46998 * 59.99660 * 8 7 6 34 34 H 1.08996 * 109.46952 * 300.00302 * 9 8 7 35 35 H 1.09001 * 109.46832 * 60.00321 * 9 8 7 36 36 H 1.09000 * 109.47380 * 300.00763 * 10 9 8 37 37 H 1.09001 * 109.46997 * 60.00426 * 10 9 8 38 38 H 0.97007 * 119.99867 * 179.97438 * 14 13 11 39 39 H 1.09004 * 113.47382 * 87.75609 * 19 6 5 40 40 H 1.08994 * 113.47564 * 218.22200 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.3382 2.3314 1.0289 5 6 3.5698 1.5685 0.0006 6 7 3.5219 1.5079 -1.4722 7 6 4.4571 2.4706 -2.0693 8 6 4.5653 2.2108 -3.5733 9 6 5.5388 3.2139 -4.1953 10 6 5.6476 2.9537 -5.6991 11 6 6.6059 3.9421 -6.3119 12 1 7.0895 4.6817 -5.6909 13 6 6.8663 3.9017 -7.6652 14 7 6.2779 3.0008 -8.4214 15 14 8.0548 5.1264 -8.4248 16 1 8.5792 6.0280 -7.3677 17 1 9.1829 4.3953 -9.0558 18 1 7.3475 5.9292 -9.4545 19 6 2.1610 2.0709 -1.3954 20 1 -0.3633 -1.0278 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5137 0.8899 25 1 1.5733 3.3763 0.8269 26 1 0.2604 2.1822 0.9631 27 1 1.6809 2.0688 2.0297 28 1 4.0755 0.7159 0.4541 29 1 3.9268 2.5241 0.3844 30 1 5.4387 2.3568 -1.6094 31 1 4.0922 3.4838 -1.9010 32 1 4.9302 1.1975 -3.7416 33 1 3.5837 2.3245 -4.0332 34 1 5.1735 4.2269 -4.0269 35 1 6.5205 3.1005 -3.7354 36 1 6.0130 1.9406 -5.8671 37 1 4.6660 3.0668 -6.1593 38 1 6.4608 2.9726 -9.3737 39 1 2.1420 3.1607 -1.3840 40 1 1.4728 1.6443 -2.1250 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381856272.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:17 Heat of formation + Delta-G solvation = -18.870196 kcal Electronic energy + Delta-G solvation = -15413.077799 eV Core-core repulsion = 13033.834892 eV Total energy + Delta-G solvation = -2379.242907 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.55294 -36.93349 -35.30354 -34.00743 -31.27415 -29.75353 -27.41739 -26.95493 -25.32851 -23.70727 -22.16989 -21.73751 -19.12545 -18.44835 -16.88608 -16.65496 -16.39897 -16.17686 -15.63985 -15.20351 -14.65806 -14.48011 -13.86519 -13.74304 -13.67967 -13.28102 -13.03228 -12.89445 -12.74248 -12.61332 -12.37938 -12.28001 -12.03690 -11.90772 -11.58113 -11.42336 -11.34219 -11.27335 -10.99739 -10.86081 -10.57806 -9.78385 -8.21274 -6.33351 1.38591 1.39510 1.53082 2.39874 3.07446 3.11207 3.34481 3.78973 3.94863 4.02049 4.16970 4.29028 4.45677 4.48067 4.53090 4.56159 4.65352 4.73891 4.76015 4.78977 4.83060 4.90466 4.93520 5.03873 5.11485 5.14343 5.25074 5.29656 5.32555 5.34765 5.42065 5.46824 5.52958 5.61288 5.74902 5.84451 6.16000 6.23684 6.84161 7.36152 8.90983 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.064353 B = 0.003846 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.997438 B = 7278.083407 C = 7469.367944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.003 3.997 6 N -0.491 5.491 7 C 0.031 3.969 8 C -0.097 4.097 9 C -0.096 4.096 10 C 0.022 3.978 11 C -0.545 4.545 12 H 0.061 0.939 13 C -0.004 4.004 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.261 1.261 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.001 3.999 20 H 0.057 0.943 21 H 0.069 0.931 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.051 0.949 36 H -0.012 1.012 37 H -0.012 1.012 38 H 0.264 0.736 39 H 0.071 0.929 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.178 -2.417 20.437 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.079 4.079 4 C -0.194 4.194 5 C -0.125 4.125 6 N -0.213 5.213 7 C -0.097 4.097 8 C -0.135 4.135 9 C -0.135 4.135 10 C -0.015 4.015 11 C -0.582 4.582 12 H 0.079 0.921 13 C -0.202 4.202 14 N -0.576 5.576 15 Si 0.793 3.207 16 H -0.185 1.185 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.128 4.128 20 H 0.077 0.923 21 H 0.088 0.912 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.026 -3.092 19.894 22.491 hybrid contribution 0.615 1.174 -0.766 1.531 sum -9.411 -1.918 19.128 21.404 Atomic orbital electron populations 1.21816 0.94887 1.01918 1.02118 1.21169 0.96351 0.93420 1.02032 1.21993 0.94449 0.96890 0.94601 1.21790 1.01218 0.98198 0.98193 1.23998 0.96990 1.02099 0.89444 1.68856 1.02973 1.40032 1.09445 1.22603 0.97670 0.94408 0.95047 1.21342 0.98634 0.98868 0.94620 1.21413 0.98265 0.98091 0.95685 1.19024 0.94888 0.95101 0.92453 1.21762 1.26185 1.16484 0.93813 0.92105 1.26062 0.98215 0.97879 0.98018 1.70125 1.44855 1.36540 1.06031 0.85341 0.78342 0.78619 0.78385 1.18459 1.20262 1.20215 1.24102 0.92156 0.98522 0.98048 0.92348 0.91218 0.93360 0.92811 0.90950 0.92700 0.90897 0.91222 0.89705 0.90717 0.90848 0.93288 0.93175 0.93630 0.93069 0.93001 0.99378 0.99385 0.92742 0.91116 0.90922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.27 71.98 0.67 -1.48 16 2 C -0.09 -1.59 5.52 30.59 0.17 -1.42 16 3 C -0.08 -1.41 1.17 -51.83 -0.06 -1.47 16 4 C -0.14 -1.85 8.96 71.99 0.64 -1.20 16 5 C 0.00 0.07 6.84 83.58 0.57 0.64 16 6 N -0.49 -13.13 6.14 -927.69 -5.70 -18.83 16 7 C 0.03 0.92 4.82 86.31 0.42 1.33 16 8 C -0.10 -3.60 5.54 30.60 0.17 -3.43 16 9 C -0.10 -4.19 5.15 30.59 0.16 -4.03 16 10 C 0.02 1.26 4.97 29.85 0.15 1.40 16 11 C -0.54 -32.30 9.11 25.60 0.23 -32.07 16 12 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 13 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 14 N -0.94 -58.85 13.29 21.45 0.28 -58.56 16 15 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 16 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 C 0.00 0.01 6.82 83.58 0.57 0.58 16 20 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 21 H 0.07 0.81 6.35 -2.39 -0.02 0.80 16 22 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 23 H 0.05 1.16 7.93 -2.39 -0.02 1.14 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.05 0.75 7.90 -2.39 -0.02 0.74 16 26 H 0.07 0.87 5.96 -2.39 -0.01 0.86 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 29 H 0.07 1.40 7.87 -2.39 -0.02 1.38 16 30 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 31 H 0.05 1.36 7.30 -2.39 -0.02 1.34 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 38 H 0.26 15.46 8.31 -92.70 -0.77 14.69 16 39 H 0.07 1.57 7.21 -2.38 -0.02 1.56 16 40 H 0.07 1.78 8.12 -2.39 -0.02 1.76 16 Total: -1.00 -66.08 316.23 1.71 -64.36 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.95 Total: 6.61 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 4.15 Total: -40.94 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -5.42 Total: -77.39 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -66.08 1.71 -64.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381856272.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.494 kcal (2) G-P(sol) polarization free energy of solvation -66.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds