Wall clock time and date at job start Mon Mar 30 2020 03:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46807 * 2 1 4 4 C 1.52999 * 109.46530 * 119.99687 * 2 1 3 5 5 C 1.53004 * 109.47114 * 65.00392 * 4 2 1 6 6 H 1.08993 * 115.56168 * 330.68394 * 5 4 2 7 7 C 1.52999 * 117.49615 * 116.37421 * 5 4 2 8 8 C 1.53007 * 60.00229 * 107.48763 * 7 5 4 9 9 H 1.08996 * 117.49916 * 107.51057 * 8 7 5 10 10 N 1.46895 * 117.49863 * 252.51080 * 8 7 5 11 11 C 1.46904 * 111.00014 * 223.60569 * 10 8 7 12 12 C 1.52997 * 109.46983 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 H 1.09002 * 109.47523 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47552 * 300.00349 * 1 2 3 24 24 H 1.09007 * 109.47419 * 60.00577 * 1 2 3 25 25 H 1.08990 * 109.46906 * 239.99442 * 2 1 3 26 26 H 1.09004 * 109.46830 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47277 * 299.99401 * 3 2 1 28 28 H 1.09004 * 109.47273 * 59.99892 * 3 2 1 29 29 H 1.09000 * 109.47428 * 305.00064 * 4 2 1 30 30 H 1.09005 * 109.46707 * 184.99983 * 4 2 1 31 31 H 1.09000 * 117.50447 * 0.02562 * 7 5 4 32 32 H 1.08999 * 117.51992 * 214.96654 * 7 5 4 33 33 H 1.00901 * 111.00513 * 99.64522 * 10 8 7 34 34 H 1.08995 * 109.46789 * 59.99756 * 11 10 8 35 35 H 1.08998 * 109.46713 * 300.00198 * 11 10 8 36 36 H 1.09000 * 109.47849 * 59.99743 * 12 11 10 37 37 H 1.09007 * 109.47288 * 299.99336 * 12 11 10 38 38 H 1.09000 * 109.47211 * 59.99130 * 13 12 11 39 39 H 1.09007 * 109.46376 * 299.99672 * 13 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6351 -2.1955 1.1880 6 1 0.7161 -2.4085 0.6422 7 6 2.7567 -3.2335 1.1155 8 6 1.9516 -3.0661 2.4058 9 1 1.2410 -3.8522 2.6612 10 7 2.6207 -2.4226 3.5442 11 6 2.3395 -3.1405 4.7947 12 6 3.0512 -2.4419 5.9549 13 6 2.7587 -3.1899 7.2572 14 6 3.4592 -2.5014 8.4002 15 1 4.0539 -1.6189 8.2161 16 6 3.3460 -3.0019 9.6798 17 7 2.6221 -4.0767 9.9040 18 14 4.2206 -2.1530 11.0954 19 1 4.9641 -0.9744 10.5825 20 1 3.2211 -1.7094 12.1002 21 1 5.1723 -3.1007 11.7290 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.6052 -0.2617 2.1370 30 1 3.1262 -0.6443 1.2953 31 1 3.7830 -2.8663 1.1119 32 1 2.5759 -4.1298 0.5222 33 1 2.3565 -1.4516 3.6173 34 1 2.6978 -4.1666 4.7130 35 1 1.2649 -3.1444 4.9774 36 1 2.6924 -1.4158 6.0364 37 1 4.1258 -2.4376 5.7723 38 1 3.1177 -4.2158 7.1754 39 1 1.6841 -3.1945 7.4400 40 1 2.5427 -4.4290 10.8042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385213155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:35 Heat of formation + Delta-G solvation = -15.741327 kcal Electronic energy + Delta-G solvation = -15136.159995 eV Core-core repulsion = 12757.052766 eV Total energy + Delta-G solvation = -2379.107229 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.72829 -35.98683 -34.54750 -32.72746 -30.29510 -27.51156 -27.29954 -25.93703 -22.59387 -21.55445 -20.86959 -19.95400 -19.50136 -16.37114 -15.97304 -15.50494 -14.91143 -14.57445 -14.31058 -13.91757 -13.62031 -13.08182 -12.51144 -12.42572 -12.34320 -12.12528 -11.77371 -11.75097 -11.36582 -11.12870 -10.96392 -10.86901 -10.70514 -10.55980 -10.49280 -10.24320 -9.83410 -9.64891 -9.29443 -9.00862 -8.32303 -8.00040 -5.97240 -3.99200 3.33089 3.40342 3.45064 3.83781 4.25795 4.49577 4.56295 4.74585 4.81404 5.04123 5.12994 5.29804 5.34446 5.38671 5.45140 5.57228 5.63676 5.67731 5.72726 5.81455 5.85771 5.87930 5.93192 5.99196 6.06651 6.15075 6.24173 6.34752 6.35394 6.74844 6.82395 7.16134 7.41129 7.65102 7.71708 7.86577 8.03436 8.46795 9.08277 9.64756 11.14301 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040017 B = 0.003937 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.533100 B = 7110.694137 C = 7492.983121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.082 4.082 5 C -0.167 4.167 6 H 0.102 0.898 7 C -0.169 4.169 8 C 0.023 3.977 9 H 0.096 0.904 10 N -0.660 5.660 11 C 0.061 3.939 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.339 0.661 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.404 6.172 -19.887 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.119 4.119 5 C -0.186 4.186 6 H 0.120 0.880 7 C -0.208 4.208 8 C -0.088 4.088 9 H 0.113 0.887 10 N -0.291 5.291 11 C -0.068 4.068 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.859 5.746 -19.826 20.839 hybrid contribution -0.511 0.524 1.021 1.256 sum -3.369 6.270 -18.804 20.106 Atomic orbital electron populations 1.21899 0.95488 1.01725 1.01484 1.21065 0.95692 0.95920 0.98479 1.21849 1.01047 0.96071 1.01612 1.21121 1.01054 0.92365 0.97409 1.22738 1.00042 0.92954 1.02871 0.87992 1.23229 0.96977 0.99974 1.00584 1.22469 0.99225 1.00246 0.86888 0.88672 1.60298 1.59800 1.06053 1.02928 1.22175 0.97861 0.98420 0.88305 1.21631 0.99597 0.98748 0.94572 1.19072 0.96826 0.95538 0.90161 1.21301 1.30130 1.11835 0.92332 0.92611 1.25035 0.95516 0.95070 0.98963 1.69977 1.40220 1.22362 1.21082 0.86538 0.79491 0.79604 0.82387 1.19718 1.21056 1.21023 0.92542 0.92703 0.93101 0.91313 0.92658 0.92949 0.92633 0.91841 0.91233 0.88465 0.89355 0.84128 0.91365 0.95650 0.93689 0.92550 0.96538 0.96800 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.01 37.16 0.33 -0.88 16 2 C -0.09 -0.80 2.92 -90.62 -0.26 -1.07 16 3 C -0.15 -1.20 9.19 37.15 0.34 -0.86 16 4 C -0.08 -0.83 4.04 -26.73 -0.11 -0.94 16 5 C -0.17 -1.78 5.52 -90.61 -0.50 -2.28 16 6 H 0.10 1.00 6.38 -51.93 -0.33 0.67 16 7 C -0.17 -1.94 10.10 -26.73 -0.27 -2.21 16 8 C 0.02 0.30 6.24 -67.71 -0.42 -0.13 16 9 H 0.10 1.25 7.90 -51.93 -0.41 0.84 16 10 N -0.66 -10.09 6.56 -106.72 -0.70 -10.79 16 11 C 0.06 1.09 5.54 -3.82 -0.02 1.07 16 12 C -0.11 -2.29 5.41 -26.73 -0.14 -2.43 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 18 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H 0.06 0.46 6.41 -51.93 -0.33 0.12 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.68 7.33 -51.93 -0.38 0.29 16 30 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 31 H 0.10 1.18 8.03 -51.93 -0.42 0.77 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.34 4.90 7.06 -39.29 -0.28 4.63 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 321.10 15.07 4.84 4.84 Total: -1.00 -29.87 321.10 -9.35 -39.21 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.60 Total: -0.46 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -1.60 Total: -23.10 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.04 Total: -37.46 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.87 -9.35 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385213155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.471 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds