Wall clock time and date at job start Mon Mar 30 2020 03:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.46807 * 2 1 4 4 C 1.52999 * 109.46530 * 119.99687 * 2 1 3 5 5 C 1.53004 * 109.47114 * 65.00392 * 4 2 1 6 6 H 1.08993 * 115.56168 * 330.68394 * 5 4 2 7 7 C 1.52999 * 117.49615 * 116.37421 * 5 4 2 8 8 C 1.53007 * 60.00229 * 107.48763 * 7 5 4 9 9 H 1.08996 * 117.49916 * 107.51057 * 8 7 5 10 10 N 1.46895 * 117.49863 * 252.51080 * 8 7 5 11 11 C 1.46904 * 111.00014 * 223.60569 * 10 8 7 12 12 C 1.52997 * 109.46983 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47000 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47211 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 13 12 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 13 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47301 * 119.99669 * 18 16 14 21 21 H 1.48498 * 109.47430 * 239.99516 * 18 16 14 22 22 H 1.09002 * 109.47523 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47552 * 300.00349 * 1 2 3 24 24 H 1.09007 * 109.47419 * 60.00577 * 1 2 3 25 25 H 1.08990 * 109.46906 * 239.99442 * 2 1 3 26 26 H 1.09004 * 109.46830 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47277 * 299.99401 * 3 2 1 28 28 H 1.09004 * 109.47273 * 59.99892 * 3 2 1 29 29 H 1.09000 * 109.47428 * 305.00064 * 4 2 1 30 30 H 1.09005 * 109.46707 * 184.99983 * 4 2 1 31 31 H 1.09000 * 117.50447 * 0.02562 * 7 5 4 32 32 H 1.08999 * 117.51992 * 214.96654 * 7 5 4 33 33 H 1.00901 * 111.00513 * 99.64522 * 10 8 7 34 34 H 1.08995 * 109.46789 * 59.99756 * 11 10 8 35 35 H 1.08998 * 109.46713 * 300.00198 * 11 10 8 36 36 H 1.09000 * 109.47849 * 59.99743 * 12 11 10 37 37 H 1.09007 * 109.47288 * 299.99336 * 12 11 10 38 38 H 1.09000 * 109.47211 * 59.99130 * 13 12 11 39 39 H 1.09007 * 109.46376 * 299.99672 * 13 12 11 40 40 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6351 -2.1955 1.1880 6 1 0.7161 -2.4085 0.6422 7 6 2.7567 -3.2335 1.1155 8 6 1.9516 -3.0661 2.4058 9 1 1.2410 -3.8522 2.6612 10 7 2.6207 -2.4226 3.5442 11 6 2.3395 -3.1405 4.7947 12 6 3.0512 -2.4419 5.9549 13 6 2.7587 -3.1899 7.2572 14 6 3.4592 -2.5014 8.4002 15 1 4.0539 -1.6189 8.2161 16 6 3.3460 -3.0019 9.6798 17 7 2.6221 -4.0767 9.9040 18 14 4.2206 -2.1530 11.0954 19 1 4.9641 -0.9744 10.5825 20 1 3.2211 -1.7094 12.1002 21 1 5.1723 -3.1007 11.7290 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8899 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6765 1.9563 0.8900 29 1 1.6052 -0.2617 2.1370 30 1 3.1262 -0.6443 1.2953 31 1 3.7830 -2.8663 1.1119 32 1 2.5759 -4.1298 0.5222 33 1 2.3565 -1.4516 3.6173 34 1 2.6978 -4.1666 4.7130 35 1 1.2649 -3.1444 4.9774 36 1 2.6924 -1.4158 6.0364 37 1 4.1258 -2.4376 5.7723 38 1 3.1177 -4.2158 7.1754 39 1 1.6841 -3.1945 7.4400 40 1 2.5427 -4.4290 10.8042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385213155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:34 Heat of formation + Delta-G solvation = -32.300640 kcal Electronic energy + Delta-G solvation = -15136.878061 eV Core-core repulsion = 12757.052766 eV Total energy + Delta-G solvation = -2379.825294 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69464 -37.11689 -35.97156 -34.58369 -32.05881 -28.34173 -27.96905 -27.79849 -24.44243 -22.48900 -22.15132 -21.32693 -20.39286 -18.50628 -16.99368 -16.76695 -16.50748 -15.92795 -15.55760 -14.98748 -14.70447 -14.30317 -14.09215 -13.69941 -13.50537 -13.18907 -13.02728 -12.91841 -12.73320 -12.50069 -12.47548 -12.30832 -11.90158 -11.68175 -11.60902 -11.42419 -11.40977 -11.20662 -11.11273 -10.64445 -10.56637 -9.19780 -8.20858 -6.32084 1.39925 1.40434 1.54161 2.40761 2.89709 3.10243 3.12251 3.73158 3.98147 4.08621 4.18441 4.20392 4.31097 4.36028 4.47184 4.51823 4.66696 4.73675 4.83327 4.87907 4.92812 4.96763 4.99850 5.06154 5.10775 5.16094 5.19149 5.22574 5.33005 5.42311 5.51390 5.55296 5.55779 5.73322 5.84647 6.10988 6.26832 6.44625 6.84879 7.37302 8.91397 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.040017 B = 0.003937 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.533100 B = 7110.694137 C = 7492.983121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.081 4.081 5 C -0.147 4.147 6 H 0.117 0.883 7 C -0.164 4.164 8 C -0.003 4.003 9 H 0.094 0.906 10 N -0.660 5.660 11 C 0.075 3.925 12 C -0.093 4.093 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.343 0.657 34 H 0.060 0.940 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.052 0.948 38 H -0.009 1.009 39 H -0.009 1.009 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 7.258 -20.798 22.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.119 4.119 5 C -0.166 4.166 6 H 0.135 0.865 7 C -0.202 4.202 8 C -0.113 4.113 9 H 0.112 0.888 10 N -0.292 5.292 11 C -0.054 4.054 12 C -0.131 4.131 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.078 0.922 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.792 3.208 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.203 1.203 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.163 0.837 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.641 6.841 -20.761 22.018 hybrid contribution -0.598 0.165 1.263 1.407 sum -3.239 7.006 -19.499 20.970 Atomic orbital electron populations 1.21895 0.95004 1.01891 1.01752 1.21036 0.96036 0.96047 0.97668 1.21847 1.00991 0.95782 1.01948 1.21121 1.00534 0.92164 0.98069 1.22799 1.00279 0.92940 1.00543 0.86518 1.23275 0.96782 1.00923 0.99225 1.22539 1.00505 1.01499 0.86806 0.88803 1.60215 1.60475 1.06208 1.02281 1.21856 0.97158 0.97835 0.88553 1.21381 0.99697 0.98586 0.93404 1.18973 0.95001 0.94738 0.92546 1.21727 1.30580 1.12268 0.93523 0.92231 1.26012 0.96185 0.95715 1.02073 1.70104 1.41461 1.23833 1.22063 0.85365 0.78341 0.78678 0.78459 1.18589 1.20222 1.20312 0.92419 0.93212 0.92104 0.90904 0.92787 0.91927 0.93006 0.92430 0.92067 0.89157 0.87764 0.83683 0.92097 0.95758 0.93086 0.92943 0.99035 0.99015 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.01 71.98 0.65 -1.46 16 2 C -0.09 -1.37 2.92 -10.80 -0.03 -1.40 16 3 C -0.15 -2.15 9.19 71.98 0.66 -1.48 16 4 C -0.08 -1.52 4.04 30.60 0.12 -1.40 16 5 C -0.15 -2.86 5.52 -10.79 -0.06 -2.92 16 6 H 0.12 1.98 6.38 -2.39 -0.02 1.96 16 7 C -0.16 -3.48 10.10 30.60 0.31 -3.17 16 8 C 0.00 -0.07 6.24 44.92 0.28 0.21 16 9 H 0.09 2.39 7.90 -2.39 -0.02 2.37 16 10 N -0.66 -19.80 6.56 -491.56 -3.23 -23.02 16 11 C 0.08 2.71 5.54 86.30 0.48 3.19 16 12 C -0.09 -3.98 5.41 30.59 0.17 -3.82 16 13 C 0.03 1.37 4.97 29.85 0.15 1.51 16 14 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 17 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 18 Si 0.97 45.00 29.54 68.60 2.03 47.02 16 19 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H 0.06 0.80 6.41 -2.39 -0.02 0.79 16 23 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.16 7.33 -2.39 -0.02 1.14 16 30 H 0.06 1.26 7.88 -2.38 -0.02 1.24 16 31 H 0.09 2.07 8.03 -2.39 -0.02 2.05 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.34 9.66 7.06 -89.69 -0.63 9.03 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 40 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -63.47 321.10 2.84 -60.63 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.34 Total: 14.94 kcal Atomic # 6 Polarization: -45.40 SS G_CDS: 3.42 Total: -41.99 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -2.94 Total: -80.61 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -63.47 2.84 -60.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385213155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.327 kcal (2) G-P(sol) polarization free energy of solvation -63.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds