Wall clock time and date at job start Mon Mar 30 2020 03:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 110.01265 * 2 1 4 4 C 1.46899 * 111.00029 * 59.30312 * 3 2 1 5 5 C 1.52997 * 109.47254 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47212 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00129 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99861 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00346 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99914 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46821 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47152 * 119.99687 * 12 10 8 15 15 H 1.48494 * 109.47204 * 239.99634 * 12 10 8 16 16 C 1.54264 * 110.03552 * 121.39145 * 2 1 3 17 17 C 1.54964 * 104.16034 * 95.75649 * 16 2 1 18 18 C 1.54898 * 102.77698 * 37.88651 * 17 16 2 19 19 C 1.53873 * 110.03249 * 238.61496 * 2 1 3 20 20 H 1.08995 * 109.47427 * 60.69877 * 1 2 3 21 21 H 1.08999 * 109.46857 * 180.69919 * 1 2 3 22 22 H 1.08998 * 109.46862 * 300.69984 * 1 2 3 23 23 H 1.00908 * 110.99583 * 183.25225 * 3 2 1 24 24 H 1.09002 * 109.47043 * 299.99792 * 4 3 2 25 25 H 1.09001 * 109.47354 * 59.99854 * 4 3 2 26 26 H 1.09002 * 109.47153 * 300.00004 * 5 4 3 27 27 H 1.08998 * 109.47533 * 59.99633 * 5 4 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 29 29 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 30 30 H 1.09002 * 109.47153 * 300.00216 * 7 6 5 31 31 H 1.09001 * 109.47289 * 60.00300 * 7 6 5 32 32 H 0.96993 * 120.00442 * 180.02562 * 11 10 8 33 33 H 1.08999 * 110.48556 * 214.40335 * 16 2 1 34 34 H 1.09000 * 110.48274 * 337.04674 * 16 2 1 35 35 H 1.09001 * 110.71857 * 279.57580 * 17 16 2 36 36 H 1.08993 * 110.92458 * 156.29601 * 17 16 2 37 37 H 1.08997 * 110.48664 * 203.40739 * 18 17 16 38 38 H 1.08997 * 110.48119 * 80.76429 * 18 17 16 39 39 H 1.09006 * 110.03258 * 359.94587 * 19 2 1 40 40 H 1.08998 * 110.03586 * 121.32871 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0328 1.3803 0.0000 4 6 1.5551 2.1146 1.1793 5 6 2.0986 3.5444 1.1445 6 6 1.6006 4.3093 2.3723 7 6 2.1447 5.7389 2.3379 8 6 1.6546 6.4921 3.5477 9 1 1.0184 6.0005 4.2688 10 6 2.0177 7.8092 3.7334 11 7 2.7920 8.4081 2.8551 12 14 1.4097 8.7432 5.2326 13 1 0.5593 7.8506 6.0605 14 1 2.5720 9.2035 6.0341 15 1 0.6139 9.9180 4.7949 16 6 2.0585 -0.7549 1.2371 17 6 2.3300 -2.1897 0.7184 18 6 2.8886 -1.9395 -0.7045 19 6 2.0571 -0.7529 -1.2341 20 1 -0.3634 0.5029 -0.8961 21 1 -0.3633 -1.0276 0.0125 22 1 -0.3633 0.5247 0.8836 23 1 3.0403 1.3982 -0.0534 24 1 0.4654 2.1396 1.1749 25 1 1.9035 1.6157 2.0836 26 1 3.1883 3.5190 1.1491 27 1 1.7507 4.0435 0.2402 28 1 0.5109 4.3346 2.3673 29 1 1.9484 3.8104 3.2769 30 1 3.2344 5.7132 2.3431 31 1 1.7973 6.2382 1.4334 32 1 3.0477 9.3345 2.9860 33 1 2.9807 -0.2988 1.5972 34 1 1.3059 -0.7694 2.0254 35 1 1.4054 -2.7653 0.6747 36 1 3.0689 -2.6951 1.3401 37 1 2.7416 -2.8185 -1.3321 38 1 3.9449 -1.6748 -0.6585 39 1 1.2229 -1.1191 -1.8326 40 1 2.6853 -0.0939 -1.8335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385321268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:58 Heat of formation + Delta-G solvation = -40.808997 kcal Electronic energy + Delta-G solvation = -15511.828036 eV Core-core repulsion = 13131.633792 eV Total energy + Delta-G solvation = -2380.194245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.42702 -35.59997 -33.63479 -32.00023 -29.84509 -28.92319 -27.71028 -25.30873 -23.82696 -21.55799 -20.61348 -19.99071 -18.92306 -16.30292 -16.04510 -15.78198 -15.01107 -14.46344 -14.12782 -13.90117 -13.65483 -13.12993 -12.53526 -12.43410 -12.14931 -11.91853 -11.57109 -11.31865 -11.28045 -11.23394 -10.98152 -10.85683 -10.77751 -10.64703 -10.43708 -10.39207 -10.29499 -9.58564 -9.21399 -8.95225 -8.30616 -8.24264 -5.95175 -3.97222 3.33544 3.40721 3.45167 4.16930 4.42379 4.49567 4.54010 4.77558 5.14358 5.22419 5.28186 5.30447 5.40253 5.44863 5.52220 5.63343 5.67917 5.70748 5.73791 5.80477 5.87895 5.93834 6.03158 6.11848 6.15275 6.20676 6.25898 6.40168 6.57580 6.88238 7.02465 7.15397 7.32293 7.52960 7.74690 7.90791 8.06365 8.49349 9.10621 9.66528 11.16246 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062410 B = 0.003913 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.538279 B = 7153.023042 C = 7242.549519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.109 3.891 3 N -0.680 5.680 4 C 0.056 3.944 5 C -0.116 4.116 6 C -0.108 4.108 7 C 0.020 3.980 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.055 3.945 11 N -0.896 5.896 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.115 4.115 20 H 0.062 0.938 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.338 0.662 24 H 0.071 0.929 25 H 0.027 0.973 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.259 0.741 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 -20.363 -6.437 21.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.018 3.982 3 N -0.311 5.311 4 C -0.073 4.073 5 C -0.154 4.154 6 C -0.147 4.147 7 C -0.017 4.017 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.192 4.192 17 C -0.160 4.160 18 C -0.164 4.164 19 C -0.153 4.153 20 H 0.081 0.919 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.157 0.843 24 H 0.089 0.911 25 H 0.045 0.955 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.853 -19.945 -6.893 21.184 hybrid contribution 0.305 0.265 1.572 1.624 sum -1.548 -19.681 -5.321 20.446 Atomic orbital electron populations 1.21906 0.93798 1.01142 1.02580 1.21589 0.95338 0.87829 0.93493 1.60720 1.15264 1.12522 1.42545 1.22113 1.00445 0.94533 0.90175 1.21636 1.00009 0.93492 1.00215 1.21581 0.99622 0.98409 0.95042 1.19100 0.96165 0.89469 0.96938 1.21337 1.30269 0.96386 1.07729 0.92736 1.25039 0.95273 0.97787 0.96480 1.69977 1.36185 1.12018 1.35402 0.86559 0.78593 0.79891 0.83098 1.19773 1.21050 1.21029 1.23169 1.01130 0.96196 0.98684 1.22449 1.00636 0.96664 0.96273 1.22384 0.99567 0.98123 0.96341 1.22238 0.99721 0.96337 0.96968 0.91902 0.92631 0.92387 0.84329 0.91089 0.95486 0.92900 0.91768 0.93512 0.93762 0.96755 0.96609 0.93124 0.91633 0.91572 0.91624 0.91897 0.91817 0.91765 0.91414 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.90 37.16 0.29 -1.17 16 2 C 0.11 1.18 0.86 -130.48 -0.11 1.07 16 3 N -0.68 -8.75 5.96 -98.83 -0.59 -9.34 16 4 C 0.06 0.82 5.03 -3.83 -0.02 0.80 16 5 C -0.12 -2.04 5.47 -26.74 -0.15 -2.19 16 6 C -0.11 -2.30 5.15 -26.74 -0.14 -2.44 16 7 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 8 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 9 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 10 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 12 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 16 C -0.15 -1.57 4.80 -25.03 -0.12 -1.69 16 17 C -0.12 -1.05 6.91 -24.69 -0.17 -1.22 16 18 C -0.13 -1.05 6.83 -25.07 -0.17 -1.22 16 19 C -0.11 -1.09 6.19 -25.61 -0.16 -1.25 16 20 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.66 6.41 -51.93 -0.33 0.33 16 23 H 0.34 4.17 8.67 -39.29 -0.34 3.83 16 24 H 0.07 1.06 6.32 -51.93 -0.33 0.73 16 25 H 0.03 0.39 7.04 -51.93 -0.37 0.03 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 33 H 0.06 0.72 7.82 -51.93 -0.41 0.32 16 34 H 0.07 0.70 7.84 -51.93 -0.41 0.29 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.61 7.67 -51.93 -0.40 0.21 16 40 H 0.07 0.73 7.90 -51.93 -0.41 0.32 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -30.17 312.22 -9.06 -39.24 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.60 Total: -1.96 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -1.29 Total: -22.84 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.15 Total: -36.19 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.17 -9.06 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.573 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds