Wall clock time and date at job start Mon Mar 30 2020 03:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46904 * 110.01265 * 2 1 4 4 C 1.46899 * 111.00029 * 59.30312 * 3 2 1 5 5 C 1.52997 * 109.47254 * 179.97438 * 4 3 2 6 6 C 1.52992 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47482 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47212 * 180.02562 * 7 6 5 9 9 H 1.07998 * 120.00129 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99861 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00346 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 119.99914 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.46821 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47152 * 119.99687 * 12 10 8 15 15 H 1.48494 * 109.47204 * 239.99634 * 12 10 8 16 16 C 1.54264 * 110.03552 * 121.39145 * 2 1 3 17 17 C 1.54964 * 104.16034 * 95.75649 * 16 2 1 18 18 C 1.54898 * 102.77698 * 37.88651 * 17 16 2 19 19 C 1.53873 * 110.03249 * 238.61496 * 2 1 3 20 20 H 1.08995 * 109.47427 * 60.69877 * 1 2 3 21 21 H 1.08999 * 109.46857 * 180.69919 * 1 2 3 22 22 H 1.08998 * 109.46862 * 300.69984 * 1 2 3 23 23 H 1.00908 * 110.99583 * 183.25225 * 3 2 1 24 24 H 1.09002 * 109.47043 * 299.99792 * 4 3 2 25 25 H 1.09001 * 109.47354 * 59.99854 * 4 3 2 26 26 H 1.09002 * 109.47153 * 300.00004 * 5 4 3 27 27 H 1.08998 * 109.47533 * 59.99633 * 5 4 3 28 28 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 29 29 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 30 30 H 1.09002 * 109.47153 * 300.00216 * 7 6 5 31 31 H 1.09001 * 109.47289 * 60.00300 * 7 6 5 32 32 H 0.96993 * 120.00442 * 180.02562 * 11 10 8 33 33 H 1.08999 * 110.48556 * 214.40335 * 16 2 1 34 34 H 1.09000 * 110.48274 * 337.04674 * 16 2 1 35 35 H 1.09001 * 110.71857 * 279.57580 * 17 16 2 36 36 H 1.08993 * 110.92458 * 156.29601 * 17 16 2 37 37 H 1.08997 * 110.48664 * 203.40739 * 18 17 16 38 38 H 1.08997 * 110.48119 * 80.76429 * 18 17 16 39 39 H 1.09006 * 110.03258 * 359.94587 * 19 2 1 40 40 H 1.08998 * 110.03586 * 121.32871 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0328 1.3803 0.0000 4 6 1.5551 2.1146 1.1793 5 6 2.0986 3.5444 1.1445 6 6 1.6006 4.3093 2.3723 7 6 2.1447 5.7389 2.3379 8 6 1.6546 6.4921 3.5477 9 1 1.0184 6.0005 4.2688 10 6 2.0177 7.8092 3.7334 11 7 2.7920 8.4081 2.8551 12 14 1.4097 8.7432 5.2326 13 1 0.5593 7.8506 6.0605 14 1 2.5720 9.2035 6.0341 15 1 0.6139 9.9180 4.7949 16 6 2.0585 -0.7549 1.2371 17 6 2.3300 -2.1897 0.7184 18 6 2.8886 -1.9395 -0.7045 19 6 2.0571 -0.7529 -1.2341 20 1 -0.3634 0.5029 -0.8961 21 1 -0.3633 -1.0276 0.0125 22 1 -0.3633 0.5247 0.8836 23 1 3.0403 1.3982 -0.0534 24 1 0.4654 2.1396 1.1749 25 1 1.9035 1.6157 2.0836 26 1 3.1883 3.5190 1.1491 27 1 1.7507 4.0435 0.2402 28 1 0.5109 4.3346 2.3673 29 1 1.9484 3.8104 3.2769 30 1 3.2344 5.7132 2.3431 31 1 1.7973 6.2382 1.4334 32 1 3.0477 9.3345 2.9860 33 1 2.9807 -0.2988 1.5972 34 1 1.3059 -0.7694 2.0254 35 1 1.4054 -2.7653 0.6747 36 1 3.0689 -2.6951 1.3401 37 1 2.7416 -2.8185 -1.3321 38 1 3.9449 -1.6748 -0.6585 39 1 1.2229 -1.1191 -1.8326 40 1 2.6853 -0.0939 -1.8335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385321268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:58 Heat of formation + Delta-G solvation = -58.156645 kcal Electronic energy + Delta-G solvation = -15512.580287 eV Core-core repulsion = 13131.633792 eV Total energy + Delta-G solvation = -2380.946495 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28882 -37.04095 -35.31485 -33.71284 -31.07935 -29.67490 -29.23898 -26.64259 -25.25538 -22.98365 -21.89787 -21.26936 -19.83391 -18.44533 -17.05220 -16.78146 -16.48371 -16.22757 -15.30339 -14.86531 -14.60360 -14.39724 -14.28590 -13.66771 -13.56711 -13.12272 -13.01818 -12.87177 -12.58266 -12.35935 -12.18902 -12.05173 -11.96154 -11.94159 -11.66028 -11.52147 -11.37826 -11.29732 -11.27511 -10.93643 -10.56550 -9.26766 -8.20388 -6.32059 1.39207 1.39866 1.53441 2.40603 3.12216 3.18989 3.66141 3.75710 4.00242 4.12333 4.25047 4.39675 4.45051 4.53362 4.54334 4.58792 4.65679 4.75433 4.79143 4.91813 4.95321 4.96627 5.03394 5.09285 5.16305 5.22651 5.24602 5.27703 5.32720 5.39226 5.43499 5.48433 5.54891 5.77133 5.86214 6.22713 6.25776 6.52467 6.85562 7.37341 8.91783 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062410 B = 0.003913 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.538279 B = 7153.023042 C = 7242.549519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.105 3.895 3 N -0.686 5.686 4 C 0.070 3.930 5 C -0.105 4.105 6 C -0.096 4.096 7 C 0.022 3.978 8 C -0.545 4.545 9 H 0.060 0.940 10 C -0.003 4.003 11 N -0.935 5.935 12 Si 0.967 3.033 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.153 4.153 17 C -0.118 4.118 18 C -0.123 4.123 19 C -0.113 4.113 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.048 0.952 23 H 0.341 0.659 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.049 0.951 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.264 0.736 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 -21.729 -5.816 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.014 3.986 3 N -0.317 5.317 4 C -0.059 4.059 5 C -0.143 4.143 6 C -0.134 4.134 7 C -0.015 4.015 8 C -0.583 4.583 9 H 0.078 0.922 10 C -0.201 4.201 11 N -0.575 5.575 12 Si 0.792 3.208 13 H -0.185 1.185 14 H -0.202 1.202 15 H -0.203 1.203 16 C -0.192 4.192 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.151 4.151 20 H 0.075 0.925 21 H 0.091 0.909 22 H 0.067 0.933 23 H 0.160 0.840 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.008 0.992 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.481 -21.333 -6.279 22.376 hybrid contribution 0.521 0.693 1.333 1.590 sum -1.961 -20.640 -4.945 21.315 Atomic orbital electron populations 1.21912 0.93619 1.02057 1.01783 1.21717 0.95503 0.86744 0.94619 1.60690 1.15565 1.13968 1.41461 1.21851 1.00201 0.92651 0.91200 1.21467 0.99888 0.95080 0.97892 1.21390 0.99558 0.95465 0.97022 1.19030 0.94624 0.92612 0.95209 1.21772 1.30652 0.97250 1.08586 0.92223 1.26035 0.95233 0.98892 0.99915 1.70109 1.37260 1.12601 1.37528 0.85366 0.78289 0.78342 0.78850 1.18542 1.20235 1.20273 1.23133 1.00476 0.97331 0.98252 1.22445 1.01295 0.95520 0.96355 1.22372 0.99251 0.98085 0.96317 1.22223 1.00050 0.96530 0.96273 0.92530 0.90897 0.93317 0.84029 0.91110 0.95114 0.93020 0.92786 0.93182 0.93242 0.99221 0.99269 0.92753 0.92580 0.91948 0.90769 0.91227 0.90354 0.91825 0.90673 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 7.90 71.98 0.57 -2.14 16 2 C 0.11 2.13 0.86 4.25 0.00 2.13 16 3 N -0.69 -17.07 5.96 -466.59 -2.78 -19.85 16 4 C 0.07 1.99 5.03 86.30 0.43 2.43 16 5 C -0.11 -3.73 5.47 30.59 0.17 -3.56 16 6 C -0.10 -4.11 5.15 30.59 0.16 -3.96 16 7 C 0.02 1.23 4.97 29.85 0.15 1.38 16 8 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 9 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 10 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 11 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 12 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 16 C -0.15 -2.90 4.80 31.69 0.15 -2.75 16 17 C -0.12 -1.75 6.91 31.91 0.22 -1.53 16 18 C -0.12 -1.75 6.83 31.67 0.22 -1.53 16 19 C -0.11 -1.93 6.19 31.32 0.19 -1.74 16 20 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 21 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.05 6.41 -2.39 -0.02 1.03 16 23 H 0.34 8.15 8.67 -89.69 -0.78 7.38 16 24 H 0.07 2.04 6.32 -2.39 -0.02 2.02 16 25 H 0.03 0.86 7.04 -2.39 -0.02 0.84 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.06 1.17 7.82 -2.39 -0.02 1.15 16 34 H 0.06 1.23 7.84 -2.39 -0.02 1.21 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.18 7.67 -2.38 -0.02 1.16 16 40 H 0.07 1.24 7.90 -2.39 -0.02 1.22 16 Total: -1.00 -64.39 312.22 2.68 -61.71 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.20 Total: 11.94 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 2.96 Total: -42.89 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -2.50 Total: -77.97 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.39 2.68 -61.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385321268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.551 kcal (2) G-P(sol) polarization free energy of solvation -64.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds