Wall clock time and date at job start Mon Mar 30 2020 03:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47180 * 2 1 4 4 C 1.53005 * 109.47139 * 120.00244 * 2 1 3 5 5 C 1.52998 * 109.47367 * 65.66919 * 4 2 1 6 6 C 1.52997 * 115.54818 * 54.65905 * 5 4 2 7 7 N 1.46900 * 109.47060 * 40.16661 * 6 5 4 8 8 C 1.46897 * 111.00228 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47379 * 185.27045 * 8 7 6 10 10 C 1.50698 * 109.47186 * 175.19623 * 9 8 7 11 11 H 1.08009 * 120.00061 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00041 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99976 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00220 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47400 * 89.99904 * 14 12 10 16 16 H 1.48505 * 109.47434 * 209.99847 * 14 12 10 17 17 H 1.48507 * 109.47144 * 329.99656 * 14 12 10 18 18 C 1.52998 * 117.52136 * 200.36261 * 5 4 2 19 19 C 1.52998 * 60.00057 * 107.48360 * 18 5 4 20 20 H 1.09005 * 109.46881 * 296.86949 * 1 2 3 21 21 H 1.09002 * 109.47206 * 56.86908 * 1 2 3 22 22 H 1.09003 * 109.46970 * 176.87191 * 1 2 3 23 23 H 1.09002 * 109.46559 * 239.99623 * 2 1 3 24 24 H 1.09003 * 109.47020 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47212 * 299.99904 * 3 2 1 26 26 H 1.09002 * 109.46960 * 60.00126 * 3 2 1 27 27 H 1.09002 * 109.46651 * 305.67019 * 4 2 1 28 28 H 1.08997 * 109.46773 * 185.67418 * 4 2 1 29 29 H 1.08995 * 109.47633 * 280.16498 * 6 5 4 30 30 H 1.09005 * 109.46832 * 160.15994 * 6 5 4 31 31 H 1.00896 * 110.99783 * 303.87935 * 7 6 5 32 32 H 1.09006 * 109.47160 * 65.26763 * 8 7 6 33 33 H 1.08997 * 109.47205 * 305.27224 * 8 7 6 34 34 H 1.08998 * 109.46724 * 295.19194 * 9 8 7 35 35 H 1.08996 * 109.47200 * 55.19380 * 9 8 7 36 36 H 0.97008 * 120.00518 * 180.02562 * 13 12 10 37 37 H 1.09000 * 117.50103 * 214.97188 * 18 5 4 38 38 H 1.08999 * 117.49553 * 359.97438 * 18 5 4 39 39 H 1.09008 * 117.49850 * 252.51241 * 19 18 5 40 40 H 1.08999 * 117.50286 * 107.49212 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6498 -2.1991 1.1800 6 6 2.0944 -2.9405 -0.0822 7 7 3.4503 -2.5114 -0.4502 8 6 3.9118 -3.2046 -1.6603 9 6 5.3699 -2.8324 -1.9367 10 6 5.8792 -3.6325 -3.1077 11 1 5.2282 -4.3366 -3.6049 12 6 7.1766 -3.4667 -3.5439 13 7 7.9695 -2.6098 -2.9382 14 14 7.8083 -4.4590 -4.9949 15 1 7.5530 -3.7132 -6.2534 16 1 9.2679 -4.6861 -4.8416 17 1 7.1064 -5.7668 -5.0434 18 6 1.6283 -2.9868 2.4915 19 6 0.3145 -2.6072 1.8055 20 1 -0.3633 0.4645 0.9168 21 1 -0.3634 0.5617 -0.8606 22 1 -0.3633 -1.0262 -0.0561 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.5961 -0.2694 2.1363 28 1 3.1253 -0.6341 1.3014 29 1 1.4078 -2.7138 -0.8978 30 1 2.0920 -4.0140 0.1071 31 1 3.4929 -1.5104 -0.5692 32 1 3.2938 -2.9069 -2.5075 33 1 3.8332 -4.2819 -1.5142 34 1 5.4359 -1.7691 -2.1670 35 1 5.9740 -3.0517 -1.0564 36 1 8.8822 -2.4928 -3.2453 37 1 1.9311 -4.0333 2.4550 38 1 1.8927 -2.4523 3.4039 39 1 -0.2858 -1.8229 2.2668 40 1 -0.2472 -3.4039 1.3178 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391899269.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:01 Heat of formation + Delta-G solvation = -25.326507 kcal Electronic energy + Delta-G solvation = -15850.294741 eV Core-core repulsion = 13470.771868 eV Total energy + Delta-G solvation = -2379.522873 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13512 -36.86034 -35.86137 -34.82916 -31.49517 -28.40407 -27.98815 -27.16777 -24.96891 -23.16240 -22.41218 -21.35982 -19.69890 -18.50473 -17.01501 -16.58027 -16.30169 -15.95159 -15.31274 -15.13225 -14.57957 -14.40822 -14.24255 -13.78041 -13.71911 -13.07477 -13.03288 -12.85004 -12.67924 -12.45739 -12.32778 -12.21594 -12.07925 -11.87705 -11.79312 -11.46116 -11.38710 -11.25142 -10.76150 -10.57987 -10.44344 -9.22145 -8.20505 -6.32353 1.39886 1.41833 1.53009 2.40298 2.87401 3.12755 3.44986 3.74936 3.90378 4.04197 4.09613 4.24102 4.27227 4.44234 4.49402 4.58081 4.70129 4.75706 4.83782 4.85015 4.89353 4.91154 5.02552 5.06567 5.10680 5.13903 5.22920 5.27167 5.34554 5.43538 5.47243 5.50514 5.54456 5.65648 5.78722 6.15524 6.29569 6.55843 6.84721 7.36947 8.91828 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034352 B = 0.005268 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.888660 B = 5313.995078 C = 5703.803709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.071 4.071 5 C -0.125 4.125 6 C 0.099 3.901 7 N -0.694 5.694 8 C 0.083 3.917 9 C 0.034 3.966 10 C -0.546 4.546 11 H 0.060 0.940 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.263 1.263 18 C -0.175 4.175 19 C -0.155 4.155 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.029 0.971 30 H 0.063 0.937 31 H 0.339 0.661 32 H 0.016 0.984 33 H 0.056 0.944 34 H -0.011 1.011 35 H -0.006 1.006 36 H 0.264 0.736 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.497 4.055 8.486 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.109 4.109 5 C -0.126 4.126 6 C -0.030 4.030 7 N -0.326 5.326 8 C -0.046 4.046 9 C -0.003 4.003 10 C -0.584 4.584 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.792 3.208 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.212 4.212 19 C -0.192 4.192 20 H 0.083 0.917 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.007 0.993 35 H 0.013 0.987 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.025 3.678 8.914 18.702 hybrid contribution 0.359 0.010 -1.438 1.482 sum -15.665 3.689 7.476 17.746 Atomic orbital electron populations 1.21820 0.94013 1.01960 1.01875 1.21104 0.97006 0.96030 0.97440 1.21842 1.00643 0.95742 1.02234 1.21088 1.00350 0.91357 0.98071 1.21357 1.01921 0.95533 0.93757 1.21418 0.88079 0.98550 0.94951 1.60517 1.24378 1.11123 1.36581 1.21780 0.95958 0.97804 0.89079 1.18891 0.91660 0.94827 0.94964 1.21615 0.97724 1.23494 1.15584 0.92203 1.25985 0.97120 0.96517 1.00086 1.70114 1.07473 1.36955 1.42647 0.85405 0.77404 0.79106 0.78849 1.19636 1.20626 1.18747 1.23069 1.01729 1.00439 0.95938 1.23094 0.89890 1.03447 1.02815 0.91717 0.93011 0.92420 0.93547 0.93613 0.92521 0.91486 0.90554 0.92691 0.95341 0.91898 0.84157 0.96583 0.92541 0.99309 0.98739 0.92712 0.89537 0.88317 0.87300 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.70 71.98 0.63 -1.94 16 2 C -0.10 -2.18 2.47 -10.79 -0.03 -2.20 16 3 C -0.15 -3.09 9.19 71.98 0.66 -2.43 16 4 C -0.07 -1.64 3.90 30.60 0.12 -1.52 16 5 C -0.13 -3.00 1.55 -52.18 -0.08 -3.08 16 6 C 0.10 2.95 4.95 86.30 0.43 3.38 16 7 N -0.69 -25.97 6.25 -513.89 -3.21 -29.18 16 8 C 0.08 3.66 5.62 86.31 0.49 4.14 16 9 C 0.03 1.89 5.28 29.85 0.16 2.05 16 10 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 11 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 12 C 0.00 0.05 5.46 84.65 0.46 0.51 16 13 N -0.93 -57.98 13.29 21.45 0.28 -57.69 16 14 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 18 C -0.17 -3.80 9.90 30.59 0.30 -3.50 16 19 C -0.16 -2.86 8.40 30.59 0.26 -2.61 16 20 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 21 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 1.07 6.50 -2.39 -0.02 1.06 16 23 H 0.05 1.26 5.87 -2.39 -0.01 1.25 16 24 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.05 1.51 7.49 -2.39 -0.02 1.49 16 29 H 0.03 0.83 7.90 -2.39 -0.02 0.81 16 30 H 0.06 1.91 7.95 -2.38 -0.02 1.89 16 31 H 0.34 12.42 5.75 -89.70 -0.52 11.91 16 32 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 34 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 35 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 36 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 37 H 0.09 1.99 8.09 -2.39 -0.02 1.97 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 40 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.14 316.29 3.18 -60.97 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.46 Total: 17.91 kcal Atomic # 6 Polarization: -42.61 SS G_CDS: 3.62 Total: -38.98 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.93 Total: -86.87 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.14 3.18 -60.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391899269.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.639 kcal (2) G-P(sol) polarization free energy of solvation -64.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds