Wall clock time and date at job start Mon Mar 30 2020 02:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99990 * 2 1 4 4 H 1.48501 * 109.47339 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46941 * 300.00161 * 3 2 1 6 6 H 1.48496 * 109.46852 * 59.99744 * 3 2 1 7 7 C 1.37881 * 120.00332 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99810 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47193 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99814 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46663 * 179.97438 * 11 10 9 13 13 H 1.08994 * 109.68971 * 65.34521 * 12 11 10 14 14 C 1.53206 * 109.57802 * 185.68206 * 12 11 10 15 15 N 1.47319 * 108.80536 * 119.79721 * 14 12 11 16 16 C 1.47273 * 110.15509 * 60.80544 * 15 14 12 17 17 C 1.53228 * 108.80668 * 299.19705 * 16 15 14 18 18 N 1.47276 * 108.80310 * 359.97438 * 17 16 15 19 19 C 1.47309 * 110.15767 * 299.19355 * 18 17 16 20 20 C 1.47311 * 110.07287 * 299.14311 * 15 14 12 21 21 H 0.96992 * 119.99825 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47445 * 59.99801 * 9 7 2 23 23 H 1.09005 * 109.47058 * 299.99512 * 9 7 2 24 24 H 1.00899 * 111.00019 * 56.04122 * 10 9 7 25 25 H 1.08996 * 109.47295 * 60.00103 * 11 10 9 26 26 H 1.08995 * 109.47394 * 299.99540 * 11 10 9 27 27 H 1.08996 * 109.58490 * 359.97438 * 14 12 11 28 28 H 1.09007 * 109.69581 * 239.65835 * 14 12 11 29 29 H 1.08998 * 109.57847 * 179.40135 * 16 15 14 30 30 H 1.09001 * 109.57712 * 58.99598 * 16 15 14 31 31 H 1.09000 * 109.58301 * 240.19967 * 17 16 15 32 32 H 1.09000 * 109.58263 * 119.78852 * 17 16 15 33 33 H 1.09000 * 109.58290 * 180.61476 * 19 18 17 34 34 H 1.09004 * 109.57853 * 300.88177 * 19 18 17 35 35 H 1.09003 * 109.58655 * 301.06392 * 20 15 14 36 36 H 1.09002 * 109.58267 * 180.65748 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 1.5055 -4.9070 0.0024 12 6 2.5305 -6.0430 0.0031 13 1 3.0943 -6.0283 0.9357 14 6 1.8080 -7.3864 -0.1392 15 7 2.2820 -8.0532 -1.3644 16 6 3.7314 -8.3002 -1.2793 17 6 4.4540 -6.9565 -1.1370 18 7 3.4523 -5.8768 -1.1344 19 6 2.6998 -5.8795 -2.4008 20 6 1.9769 -7.2228 -2.5423 21 1 -0.4849 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 2.8401 -3.5482 0.7835 25 1 0.8810 -4.9821 -0.8877 26 1 0.8803 -4.9808 0.8922 27 1 0.7333 -7.2179 -0.2070 28 1 2.0252 -8.0137 0.7255 29 1 4.0700 -8.8029 -2.1853 30 1 3.9453 -8.9239 -0.4113 31 1 5.1372 -6.8185 -1.9750 32 1 5.0124 -6.9393 -0.2010 33 1 1.9692 -5.0707 -2.3933 34 1 3.3880 -5.7424 -3.2349 35 1 0.9015 -7.0547 -2.6021 36 1 2.3203 -7.7286 -3.4447 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394786763.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:06 Heat of formation + Delta-G solvation = 4.520139 kcal Electronic energy + Delta-G solvation = -16182.492220 eV Core-core repulsion = 13700.723251 eV Total energy + Delta-G solvation = -2481.768969 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03077 -37.15983 -34.82675 -33.79048 -32.48009 -32.02421 -28.93706 -26.20534 -24.77594 -24.16307 -23.39402 -22.59020 -19.05240 -18.53881 -18.06522 -17.39280 -16.92270 -16.50263 -15.97284 -15.15404 -14.74304 -14.25256 -14.06996 -13.97696 -13.92612 -13.74323 -13.36780 -13.17871 -13.05522 -12.74319 -12.61469 -12.41837 -12.05818 -11.57570 -11.45497 -11.38244 -11.18933 -10.69521 -10.66529 -8.99919 -8.57539 -8.22517 -6.33502 1.40484 1.41374 1.55671 2.40117 2.75899 3.10482 3.21233 3.48464 3.71967 3.80519 3.97427 4.04409 4.21580 4.34310 4.44499 4.53058 4.60586 4.66858 4.70604 4.77194 4.84723 4.90448 4.97930 5.02835 5.07632 5.12931 5.26763 5.60603 5.69373 5.77133 6.03242 6.21867 6.30350 6.49530 6.76550 6.92122 7.37734 8.89220 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.053044 B = 0.005776 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.737853 B = 4846.071843 C = 4983.357130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.062 0.938 9 C 0.210 3.790 10 N -0.668 5.668 11 C 0.073 3.927 12 C 0.056 3.944 13 H 0.086 0.914 14 C 0.020 3.980 15 N -0.521 5.521 16 C 0.014 3.986 17 C 0.011 3.989 18 N -0.510 5.510 19 C 0.018 3.982 20 C 0.016 3.984 21 H 0.265 0.735 22 H -0.005 1.005 23 H -0.044 1.044 24 H 0.332 0.668 25 H 0.052 0.948 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.838 -16.617 -2.091 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.569 4.569 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.298 5.298 11 C -0.057 4.057 12 C -0.055 4.055 13 H 0.104 0.896 14 C -0.110 4.110 15 N -0.242 5.242 16 C -0.116 4.116 17 C -0.118 4.118 18 N -0.232 5.232 19 C -0.112 4.112 20 C -0.115 4.115 21 H 0.074 0.926 22 H 0.013 0.987 23 H -0.026 1.026 24 H 0.149 0.851 25 H 0.070 0.930 26 H 0.040 0.960 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.780 -16.504 -2.783 18.058 hybrid contribution -0.479 1.111 0.886 1.500 sum 6.301 -15.392 -1.897 16.740 Atomic orbital electron populations 1.70098 1.07823 1.27908 1.51823 1.25964 0.95785 1.03413 0.94631 0.85268 0.78877 0.78251 0.77781 1.18767 1.20371 1.20179 1.21556 0.93704 0.91447 1.50179 0.91969 1.19187 0.90613 0.89285 0.92704 1.60420 1.19570 1.00714 1.49117 1.22000 0.94967 0.89763 0.98967 1.22361 0.93853 0.93978 0.95277 0.89560 1.22901 1.00177 0.93906 0.94060 1.63983 1.15039 1.42696 1.02510 1.22952 0.87087 0.97361 1.04221 1.22974 0.95117 0.90012 1.03746 1.63718 1.14206 1.43285 1.01957 1.22760 0.98167 0.97661 0.92642 1.22870 1.00950 0.93168 0.94468 0.92641 0.98701 1.02605 0.85130 0.92961 0.95979 0.90563 0.88602 0.89145 0.89188 0.89826 0.89942 0.92083 0.90202 0.90871 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.66 13.29 21.45 0.28 -57.38 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 3 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.53 -31.16 9.32 25.60 0.24 -30.92 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 9 C 0.21 11.62 5.44 85.56 0.47 12.08 16 10 N -0.67 -29.75 6.22 -517.93 -3.22 -32.97 16 11 C 0.07 2.64 4.33 86.31 0.37 3.02 16 12 C 0.06 1.58 2.68 44.90 0.12 1.70 16 13 H 0.09 2.35 8.14 -2.39 -0.02 2.34 16 14 C 0.02 0.48 5.80 86.29 0.50 0.98 16 15 N -0.52 -11.72 5.44 -891.66 -4.85 -16.57 16 16 C 0.01 0.25 6.14 86.31 0.53 0.78 16 17 C 0.01 0.24 6.14 86.31 0.53 0.77 16 18 N -0.51 -14.69 4.97 -866.45 -4.31 -19.00 16 19 C 0.02 0.50 5.75 86.29 0.50 1.00 16 20 C 0.02 0.36 6.13 86.29 0.53 0.89 16 21 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 22 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 23 H -0.04 -2.59 8.14 -2.38 -0.02 -2.61 16 24 H 0.33 14.32 8.72 -89.69 -0.78 13.54 16 25 H 0.05 1.99 6.59 -2.39 -0.02 1.98 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 1.88 7.61 -2.39 -0.02 1.87 16 28 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 2.13 6.28 -2.39 -0.01 2.11 16 34 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -65.51 280.99 -5.56 -71.07 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.26 Total: 16.86 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 4.25 Total: -9.25 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -12.10 Total: -125.93 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -65.51 -5.56 -71.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394786763.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.595 kcal (2) G-P(sol) polarization free energy of solvation -65.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds