Wall clock time and date at job start Mon Mar 30 2020 03:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48493 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47480 * 300.00631 * 3 2 1 6 6 H 1.48500 * 109.46843 * 60.00316 * 3 2 1 7 7 C 1.37879 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99750 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47066 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.46764 * 179.97438 * 12 11 10 14 14 C 1.46906 * 110.99888 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46897 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.53787 * 113.61211 * 274.14009 * 16 15 14 18 18 C 1.53953 * 87.01614 * 220.04422 * 17 16 15 19 19 C 1.53770 * 113.61593 * 176.53186 * 16 15 14 20 20 H 0.96999 * 119.99593 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47021 * 60.00660 * 9 7 2 22 22 H 1.08997 * 109.47467 * 300.00068 * 9 7 2 23 23 H 1.09004 * 109.47454 * 59.99543 * 10 9 7 24 24 H 1.09005 * 109.47213 * 300.00673 * 10 9 7 25 25 H 1.09004 * 109.47051 * 60.00165 * 11 10 9 26 26 H 1.08997 * 109.47122 * 299.99766 * 11 10 9 27 27 H 1.08995 * 109.47210 * 59.99879 * 12 11 10 28 28 H 1.08997 * 109.46954 * 299.99863 * 12 11 10 29 29 H 1.00902 * 111.00533 * 56.04323 * 13 12 11 30 30 H 1.09000 * 109.47033 * 300.00113 * 14 13 12 31 31 H 1.09001 * 109.46544 * 60.00058 * 14 13 12 32 32 H 1.09000 * 109.47486 * 299.99976 * 15 14 13 33 33 H 1.09001 * 109.47362 * 60.00699 * 15 14 13 34 34 H 1.08998 * 112.84682 * 45.33228 * 16 15 14 35 35 H 1.08996 * 113.61334 * 334.56317 * 17 16 15 36 36 H 1.08998 * 113.61327 * 105.46988 * 17 16 15 37 37 H 1.08997 * 113.53988 * 270.81322 * 18 17 16 38 38 H 1.09003 * 113.66384 * 139.93346 * 18 17 16 39 39 H 1.09001 * 113.61377 * 254.52911 * 19 16 15 40 40 H 1.08997 * 113.61844 * 25.34687 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 7 1.7401 -7.4221 -0.0005 14 6 2.6646 -8.5638 -0.0005 15 6 1.8645 -9.8679 0.0001 16 6 2.8273 -11.0570 0.0008 17 6 3.2941 -11.4724 -1.4045 18 6 3.1552 -12.9310 -0.9317 19 6 2.1220 -12.4207 0.0867 20 1 -0.4849 0.8401 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8896 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 0.8540 -5.0446 -0.8914 26 1 0.8534 -5.0451 0.8886 27 1 3.1006 -6.0923 0.8899 28 1 3.1019 -6.0922 -0.8901 29 1 1.1039 -7.4725 -0.7821 30 1 3.2926 -8.5228 -0.8905 31 1 3.2925 -8.5227 0.8895 32 1 1.2368 -9.9087 0.8903 33 1 1.2363 -9.9092 -0.8897 34 1 3.6424 -10.9412 0.7151 35 1 2.5943 -11.2012 -2.1949 36 1 4.3203 -11.1807 -1.6277 37 1 4.0608 -13.3281 -0.4732 38 1 2.7339 -13.5968 -1.6849 39 1 2.2034 -12.8935 1.0654 40 1 1.1008 -12.4089 -0.2940 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395442015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:09 Heat of formation + Delta-G solvation = -21.823751 kcal Electronic energy + Delta-G solvation = -14711.119514 eV Core-core repulsion = 12331.748531 eV Total energy + Delta-G solvation = -2379.370983 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.25192 -36.72799 -34.31411 -32.44460 -30.67131 -27.88723 -25.91557 -24.99342 -23.50007 -21.70237 -21.21719 -19.91430 -19.61966 -16.23960 -16.03113 -15.86111 -15.29402 -14.53252 -14.46757 -14.08966 -13.88009 -13.14727 -12.72454 -12.55918 -12.39716 -12.22126 -11.64779 -11.52658 -11.36467 -11.16532 -10.96852 -10.82524 -10.53923 -10.50840 -10.40107 -10.34456 -10.23793 -9.59470 -9.21910 -8.95784 -8.33809 -8.29969 -5.95510 -3.97536 3.33396 3.40554 3.45031 4.12613 4.36245 4.39403 4.49492 4.54956 4.62672 4.97724 5.26019 5.28739 5.39671 5.40016 5.43722 5.46693 5.54701 5.58073 5.60931 5.64022 5.69096 5.86727 5.95345 6.00169 6.12650 6.20691 6.26650 6.30899 6.55722 6.86778 7.00591 7.09798 7.27725 7.47387 7.74306 7.90268 8.06034 8.48937 9.10302 9.66195 11.15923 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.099578 B = 0.002930 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.118339 B = 9554.717441 C = 9693.746221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.694 5.694 14 C 0.059 3.941 15 C -0.107 4.107 16 C -0.109 4.109 17 C -0.139 4.139 18 C -0.144 4.144 19 C -0.138 4.138 20 H 0.259 0.741 21 H 0.014 0.986 22 H 0.016 0.984 23 H 0.047 0.953 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.338 0.662 30 H 0.026 0.974 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.207 -23.445 -1.466 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.154 4.154 12 C -0.070 4.070 13 N -0.324 5.324 14 C -0.070 4.070 15 C -0.145 4.145 16 C -0.128 4.128 17 C -0.177 4.177 18 C -0.182 4.182 19 C -0.175 4.175 20 H 0.069 0.931 21 H 0.033 0.967 22 H 0.034 0.966 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.155 0.845 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.985 -23.331 -0.779 23.871 hybrid contribution 0.777 1.021 -0.934 1.587 sum 5.762 -22.310 -1.713 23.106 Atomic orbital electron populations 1.69986 1.06041 1.26382 1.51186 1.25046 0.94857 0.99253 0.95475 0.86550 0.80109 0.83884 0.77545 1.19781 1.21055 1.21020 1.21334 0.93052 0.91218 1.50098 0.92727 1.19101 0.94050 0.91368 0.97162 1.21589 0.99073 0.93990 1.00053 1.21641 0.97892 0.93877 1.01958 1.22069 0.96207 0.88646 1.00029 1.60533 1.20078 1.01885 1.49908 1.21941 0.94613 0.90194 1.00268 1.21554 0.97687 0.92755 1.02532 1.22526 0.98596 0.94095 0.97599 1.23024 1.01496 0.96154 0.96984 1.22845 0.99535 0.96678 0.99125 1.22932 0.98672 0.96431 0.99465 0.93120 0.96729 0.96592 0.93455 0.93716 0.92783 0.91669 0.91369 0.95682 0.84464 0.95608 0.91336 0.90975 0.92090 0.89309 0.90185 0.91712 0.90381 0.91664 0.91643 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 11 C -0.12 -2.05 5.47 -26.73 -0.15 -2.20 16 12 C 0.06 0.88 5.69 -3.82 -0.02 0.86 16 13 N -0.69 -9.09 6.50 -113.78 -0.74 -9.83 16 14 C 0.06 0.65 5.68 -3.82 -0.02 0.63 16 15 C -0.11 -0.99 5.30 -26.73 -0.14 -1.13 16 16 C -0.11 -0.87 3.64 -89.81 -0.33 -1.20 16 17 C -0.14 -1.05 7.65 -25.83 -0.20 -1.25 16 18 C -0.14 -0.99 8.09 -25.83 -0.21 -1.20 16 19 C -0.14 -0.99 7.64 -25.92 -0.20 -1.19 16 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 21 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.34 4.14 8.73 -39.29 -0.34 3.80 16 30 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.55 7.88 -51.93 -0.41 0.14 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.61 7.92 -51.93 -0.41 0.20 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.58 8.10 -51.93 -0.42 0.15 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -30.32 323.44 -9.99 -40.30 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.89 Total: -2.87 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -1.95 Total: -22.68 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.00 Total: -36.69 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.32 -9.99 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395442015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.481 kcal (2) G-P(sol) polarization free energy of solvation -30.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds