Wall clock time and date at job start Mon Mar 30 2020 03:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99957 * 2 1 4 4 H 1.48493 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47480 * 300.00631 * 3 2 1 6 6 H 1.48500 * 109.46843 * 60.00316 * 3 2 1 7 7 C 1.37879 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99750 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.47066 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.46764 * 179.97438 * 12 11 10 14 14 C 1.46906 * 110.99888 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46897 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.46997 * 180.02562 * 15 14 13 17 17 C 1.53787 * 113.61211 * 274.14009 * 16 15 14 18 18 C 1.53953 * 87.01614 * 220.04422 * 17 16 15 19 19 C 1.53770 * 113.61593 * 176.53186 * 16 15 14 20 20 H 0.96999 * 119.99593 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47021 * 60.00660 * 9 7 2 22 22 H 1.08997 * 109.47467 * 300.00068 * 9 7 2 23 23 H 1.09004 * 109.47454 * 59.99543 * 10 9 7 24 24 H 1.09005 * 109.47213 * 300.00673 * 10 9 7 25 25 H 1.09004 * 109.47051 * 60.00165 * 11 10 9 26 26 H 1.08997 * 109.47122 * 299.99766 * 11 10 9 27 27 H 1.08995 * 109.47210 * 59.99879 * 12 11 10 28 28 H 1.08997 * 109.46954 * 299.99863 * 12 11 10 29 29 H 1.00902 * 111.00533 * 56.04323 * 13 12 11 30 30 H 1.09000 * 109.47033 * 300.00113 * 14 13 12 31 31 H 1.09001 * 109.46544 * 60.00058 * 14 13 12 32 32 H 1.09000 * 109.47486 * 299.99976 * 15 14 13 33 33 H 1.09001 * 109.47362 * 60.00699 * 15 14 13 34 34 H 1.08998 * 112.84682 * 45.33228 * 16 15 14 35 35 H 1.08996 * 113.61334 * 334.56317 * 17 16 15 36 36 H 1.08998 * 113.61327 * 105.46988 * 17 16 15 37 37 H 1.08997 * 113.53988 * 270.81322 * 18 17 16 38 38 H 1.09003 * 113.66384 * 139.93346 * 18 17 16 39 39 H 1.09001 * 113.61377 * 254.52911 * 19 16 15 40 40 H 1.08997 * 113.61844 * 25.34687 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0005 13 7 1.7401 -7.4221 -0.0005 14 6 2.6646 -8.5638 -0.0005 15 6 1.8645 -9.8679 0.0001 16 6 2.8273 -11.0570 0.0008 17 6 3.2941 -11.4724 -1.4045 18 6 3.1552 -12.9310 -0.9317 19 6 2.1220 -12.4207 0.0867 20 1 -0.4849 0.8401 0.0004 21 1 0.6242 -2.5567 -0.8904 22 1 0.6248 -2.5571 0.8896 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8905 25 1 0.8540 -5.0446 -0.8914 26 1 0.8534 -5.0451 0.8886 27 1 3.1006 -6.0923 0.8899 28 1 3.1019 -6.0922 -0.8901 29 1 1.1039 -7.4725 -0.7821 30 1 3.2926 -8.5228 -0.8905 31 1 3.2925 -8.5227 0.8895 32 1 1.2368 -9.9087 0.8903 33 1 1.2363 -9.9092 -0.8897 34 1 3.6424 -10.9412 0.7151 35 1 2.5943 -11.2012 -2.1949 36 1 4.3203 -11.1807 -1.6277 37 1 4.0608 -13.3281 -0.4732 38 1 2.7339 -13.5968 -1.6849 39 1 2.2034 -12.8935 1.0654 40 1 1.1008 -12.4089 -0.2940 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395442015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:08 Heat of formation + Delta-G solvation = -38.830918 kcal Electronic energy + Delta-G solvation = -14711.857000 eV Core-core repulsion = 12331.748531 eV Total energy + Delta-G solvation = -2380.108469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.87613 -37.91391 -36.02357 -34.26865 -31.95324 -29.47103 -26.61179 -26.36977 -24.73849 -22.86399 -22.45791 -21.57696 -20.21410 -18.44167 -17.14752 -16.57834 -16.47443 -16.05348 -15.92862 -15.05538 -14.89658 -14.41231 -14.32096 -13.66209 -13.46183 -13.29015 -13.10055 -12.97701 -12.84915 -12.35516 -12.23625 -12.16012 -12.10545 -11.85408 -11.41985 -11.37894 -11.31434 -11.13134 -10.97660 -10.79219 -10.56375 -9.37028 -8.20394 -6.31933 1.39363 1.39966 1.53563 2.40678 3.12233 3.17818 3.73999 3.78387 3.91571 4.02014 4.07656 4.17979 4.31572 4.48216 4.53033 4.62526 4.66596 4.72426 4.83338 4.86600 4.90221 4.92404 4.94607 5.07683 5.09793 5.18269 5.23375 5.26267 5.31160 5.35598 5.47641 5.54811 5.66675 5.77387 5.86473 6.10357 6.25461 6.47056 6.85829 7.37416 8.91798 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.099578 B = 0.002930 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 281.118339 B = 9554.717441 C = 9693.746221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.022 3.978 10 C -0.097 4.097 11 C -0.106 4.106 12 C 0.070 3.930 13 N -0.701 5.701 14 C 0.061 3.939 15 C -0.100 4.100 16 C -0.110 4.110 17 C -0.141 4.141 18 C -0.141 4.141 19 C -0.137 4.137 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.011 1.011 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.032 0.968 29 H 0.343 0.657 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -24.008 -1.673 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.135 4.135 11 C -0.144 4.144 12 C -0.059 4.059 13 N -0.332 5.332 14 C -0.067 4.067 15 C -0.138 4.138 16 C -0.129 4.129 17 C -0.178 4.178 18 C -0.179 4.179 19 C -0.175 4.175 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.007 0.993 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.161 0.839 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.296 -23.917 -0.988 24.751 hybrid contribution 0.327 1.172 -0.867 1.494 sum 6.622 -22.744 -1.855 23.761 Atomic orbital electron populations 1.70118 1.07865 1.27725 1.51831 1.26047 0.95832 1.03554 0.94750 0.85359 0.79033 0.78561 0.77847 1.18544 1.20257 1.20281 1.21772 0.93566 0.92513 1.50330 0.92200 1.19032 0.94528 0.93321 0.94634 1.21400 0.97985 0.93687 1.00443 1.21473 0.98056 0.93384 1.01476 1.21845 0.95284 0.88337 1.00407 1.60493 1.20558 1.01756 1.50389 1.21972 0.94463 0.89991 1.00316 1.21482 0.97655 0.92375 1.02267 1.22529 0.98474 0.93901 0.98030 1.23038 1.01455 0.96731 0.96613 1.22850 0.99647 0.96324 0.99053 1.22942 0.98786 0.95879 0.99880 0.92755 0.99168 0.99260 0.93104 0.93113 0.92795 0.92684 0.91276 0.95021 0.83902 0.95213 0.91530 0.91722 0.91846 0.89258 0.90286 0.91694 0.89805 0.91117 0.91259 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.36 13.29 21.45 0.28 -58.08 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.21 4.97 29.85 0.15 1.35 16 10 C -0.10 -4.11 5.15 30.59 0.16 -3.96 16 11 C -0.11 -3.72 5.47 30.60 0.17 -3.55 16 12 C 0.07 1.99 5.69 86.31 0.49 2.48 16 13 N -0.70 -17.44 6.50 -513.88 -3.34 -20.78 16 14 C 0.06 1.25 5.68 86.30 0.49 1.74 16 15 C -0.10 -1.70 5.30 30.60 0.16 -1.54 16 16 C -0.11 -1.60 3.64 -10.27 -0.04 -1.64 16 17 C -0.14 -1.91 7.65 31.18 0.24 -1.67 16 18 C -0.14 -1.68 8.09 31.18 0.25 -1.43 16 19 C -0.14 -1.77 7.64 31.12 0.24 -1.53 16 20 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 22 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 23 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.34 7.96 8.73 -89.69 -0.78 7.18 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.05 7.88 -2.39 -0.02 1.03 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.08 7.92 -2.39 -0.02 1.07 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.04 8.10 -2.39 -0.02 1.02 16 Total: -1.00 -64.26 323.44 2.15 -62.11 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.18 Total: 10.87 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 3.00 Total: -41.27 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -3.06 Total: -78.86 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.26 2.15 -62.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395442015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.280 kcal (2) G-P(sol) polarization free energy of solvation -64.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds