Wall clock time and date at job start Mon Mar 30 2020 03:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46809 * 2 1 4 4 C 1.52999 * 109.46823 * 119.99644 * 2 1 3 5 5 C 1.52998 * 115.56293 * 280.33409 * 4 2 1 6 6 C 1.53001 * 117.49772 * 134.65373 * 4 2 1 7 7 C 1.52994 * 117.49920 * 66.03070 * 4 2 1 8 8 H 1.09000 * 117.49752 * 214.99883 * 7 4 2 9 9 N 1.46897 * 117.50015 * 359.97438 * 7 4 2 10 10 C 1.46904 * 111.00190 * 205.34595 * 9 7 4 11 11 C 1.52994 * 109.47201 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47283 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47494 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00162 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00030 * 179.97438 * 13 12 11 16 16 N 1.31505 * 120.00195 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99615 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47159 * 60.00387 * 17 15 13 19 19 H 1.48503 * 109.46883 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47363 * 300.00109 * 17 15 13 21 21 H 1.09002 * 109.47331 * 60.00118 * 1 2 3 22 22 H 1.08996 * 109.47448 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47328 * 300.00150 * 1 2 3 24 24 H 1.08996 * 109.47093 * 239.99751 * 2 1 3 25 25 H 1.09002 * 109.46637 * 173.85095 * 3 2 1 26 26 H 1.09000 * 109.47106 * 293.84120 * 3 2 1 27 27 H 1.08992 * 109.47569 * 53.85084 * 3 2 1 28 28 H 1.09001 * 109.47246 * 205.69067 * 5 4 2 29 29 H 1.09005 * 109.47360 * 325.69745 * 5 4 2 30 30 H 1.09001 * 109.46965 * 85.68996 * 5 4 2 31 31 H 1.08995 * 117.50126 * 145.01968 * 6 4 2 32 32 H 1.09002 * 117.49670 * 359.97438 * 6 4 2 33 33 H 1.00899 * 111.00048 * 81.38721 * 9 7 4 34 34 H 1.09003 * 109.46737 * 300.00063 * 10 9 7 35 35 H 1.08994 * 109.47168 * 59.99623 * 10 9 7 36 36 H 1.08995 * 109.47224 * 299.99800 * 11 10 9 37 37 H 1.09004 * 109.47101 * 59.99857 * 11 10 9 38 38 H 1.09003 * 109.47013 * 300.00545 * 12 11 10 39 39 H 1.09004 * 109.46856 * 59.99537 * 12 11 10 40 40 H 0.96995 * 120.00217 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0265 0.1023 2.5387 6 6 3.1746 -1.7314 1.0681 7 6 1.7555 -2.2200 1.3653 8 1 1.5585 -2.6193 2.3602 9 7 1.0133 -2.8564 0.2690 10 6 0.3079 -4.0567 0.7378 11 6 -0.4522 -4.6900 -0.4291 12 6 -1.1864 -5.9404 0.0590 13 6 -1.9346 -6.5646 -1.0905 14 1 -1.8906 -6.1147 -2.0714 15 6 -2.6746 -7.7107 -0.8903 16 7 -2.7278 -8.2588 0.3039 17 14 -3.6015 -8.4847 -2.3155 18 1 -2.6418 -8.8596 -3.3849 19 1 -4.3142 -9.6983 -1.8417 20 1 -4.5859 -7.5114 -2.8528 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 3.1244 1.4445 0.1101 26 1 1.7694 1.9236 -0.9400 27 1 1.5895 1.9872 0.8297 28 1 2.7825 -0.2822 3.2233 29 1 2.2433 1.1450 2.3062 30 1 1.0439 0.0309 3.0052 31 1 3.9115 -1.8093 1.8675 32 1 3.5576 -1.8824 0.0588 33 1 1.6253 -3.0750 -0.5029 34 1 1.0301 -4.7716 1.1323 35 1 -0.3962 -3.7809 1.5227 36 1 -1.1743 -3.9749 -0.8232 37 1 0.2517 -4.9657 -1.2144 38 1 -0.4639 -6.6554 0.4529 39 1 -1.8902 -5.6651 0.8445 40 1 -3.2486 -9.0649 0.4448 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397287694.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:06 Heat of formation + Delta-G solvation = -7.855886 kcal Electronic energy + Delta-G solvation = -15571.656841 eV Core-core repulsion = 13192.891551 eV Total energy + Delta-G solvation = -2378.765290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.23120 -35.49250 -33.58922 -32.54094 -30.48618 -28.16871 -26.85114 -25.77975 -22.52511 -22.44881 -21.48124 -20.03656 -18.05927 -16.31082 -15.66215 -15.27817 -15.01261 -14.43753 -13.95039 -13.44713 -13.34153 -13.10342 -12.84506 -12.39077 -12.27117 -11.94533 -11.78157 -11.65963 -11.42917 -11.10837 -10.87156 -10.85772 -10.58436 -10.55078 -10.42160 -10.23226 -9.69152 -9.61402 -9.27103 -9.02034 -8.31802 -7.87754 -5.97119 -3.99207 3.35553 3.39558 3.42380 3.78670 4.27042 4.49654 4.71639 4.85327 4.95499 5.15824 5.29599 5.38643 5.42727 5.51241 5.64435 5.75123 5.76264 5.81272 5.84739 5.88953 5.93416 5.97976 6.06404 6.10582 6.12398 6.34229 6.36652 6.54657 6.74384 6.77253 6.82624 7.15744 7.39920 7.63543 7.71001 7.86271 8.03317 8.46571 9.07819 9.64629 11.14351 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048821 B = 0.004363 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.389993 B = 6416.462021 C = 6688.482173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C -0.148 4.148 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.203 4.203 7 C 0.037 3.963 8 H 0.104 0.896 9 N -0.654 5.654 10 C 0.060 3.940 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.042 0.958 22 H 0.086 0.914 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.338 0.662 34 H 0.025 0.975 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.543 16.255 2.331 19.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 C -0.205 4.205 4 C -0.114 4.114 5 C -0.175 4.175 6 C -0.242 4.242 7 C -0.074 4.074 8 H 0.122 0.878 9 N -0.283 5.283 10 C -0.068 4.068 11 C -0.145 4.145 12 C -0.015 4.015 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.061 0.939 22 H 0.105 0.895 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.157 0.843 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.892 16.485 2.490 19.386 hybrid contribution 0.292 -1.157 -0.586 1.329 sum 10.184 15.328 1.904 18.501 Atomic orbital electron populations 1.21844 0.94459 1.04103 0.99935 1.20405 0.96305 0.94214 0.95275 1.21932 1.00565 0.96802 1.01215 1.21762 1.01656 0.91132 0.96853 1.21409 1.01549 0.99675 0.94879 1.23702 0.92323 1.05740 1.02433 1.22558 0.93794 0.95282 0.95780 0.87808 1.60296 1.31082 1.29035 1.07851 1.22176 0.96541 0.88856 0.99224 1.21622 0.98390 0.98773 0.95704 1.19057 0.94881 0.91029 0.96561 1.21222 1.29242 1.09532 0.95761 0.92740 1.25024 0.96730 0.97099 0.95623 1.69951 1.41453 1.20939 1.21298 0.86660 0.80044 0.78652 0.82652 1.20277 1.21318 1.20217 0.93909 0.89532 0.93904 0.91508 0.93128 0.93128 0.92673 0.92979 0.91768 0.92324 0.89250 0.88998 0.84294 0.95629 0.91406 0.92551 0.93703 0.96837 0.96583 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.04 37.16 0.34 -1.46 16 2 C -0.04 -0.49 2.49 -90.62 -0.23 -0.71 16 3 C -0.15 -1.40 8.20 37.16 0.30 -1.10 16 4 C -0.11 -1.25 1.78 -154.51 -0.27 -1.53 16 5 C -0.12 -1.15 9.62 37.16 0.36 -0.80 16 6 C -0.20 -2.22 9.52 -26.73 -0.25 -2.47 16 7 C 0.04 0.47 5.85 -67.72 -0.40 0.07 16 8 H 0.10 1.35 7.89 -51.93 -0.41 0.94 16 9 N -0.65 -9.44 4.51 -106.73 -0.48 -9.92 16 10 C 0.06 1.04 5.54 -3.82 -0.02 1.02 16 11 C -0.11 -2.22 5.41 -26.73 -0.14 -2.37 16 12 C 0.02 0.58 4.97 -27.89 -0.14 0.45 16 13 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.30 13.29 55.43 0.74 -26.57 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 22 H 0.09 1.26 6.36 -51.93 -0.33 0.93 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.80 7.95 -51.93 -0.41 0.38 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.50 6.74 -51.93 -0.35 0.15 16 28 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 29 H 0.06 0.57 5.76 -51.93 -0.30 0.27 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.09 0.98 8.03 -51.93 -0.42 0.57 16 33 H 0.34 4.68 8.52 -39.29 -0.33 4.34 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 318.46 15.07 4.80 4.80 Total: -1.00 -29.32 318.46 -8.41 -37.73 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.57 Total: -0.32 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -0.87 Total: -22.62 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.26 Total: -36.49 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.32 -8.41 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397287694.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.874 kcal (2) G-P(sol) polarization free energy of solvation -29.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds