Wall clock time and date at job start Mon Mar 30 2020 03:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47355 * 2 1 4 4 C 1.53002 * 109.46854 * 119.99475 * 2 1 3 5 5 C 1.53006 * 115.54898 * 325.58712 * 4 2 1 6 6 C 1.53002 * 117.51835 * 111.28505 * 4 2 1 7 7 C 1.53004 * 117.50201 * 179.91588 * 4 2 1 8 8 H 1.08991 * 117.49774 * 144.99718 * 7 4 2 9 9 N 1.46894 * 117.49292 * 359.97346 * 7 4 2 10 10 C 1.46909 * 110.99809 * 155.00203 * 9 7 4 11 11 C 1.52999 * 109.47316 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47080 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47003 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00354 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99839 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99921 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47016 * 90.00249 * 17 15 13 19 19 H 1.48500 * 109.46926 * 209.99907 * 17 15 13 20 20 H 1.48498 * 109.47231 * 330.00346 * 17 15 13 21 21 H 1.08992 * 109.47678 * 300.00747 * 1 2 3 22 22 H 1.09006 * 109.47016 * 60.00712 * 1 2 3 23 23 H 1.09007 * 109.47428 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47327 * 239.98903 * 2 1 3 25 25 H 1.09001 * 109.47131 * 59.99000 * 3 2 1 26 26 H 1.08998 * 109.47276 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.46477 * 299.99618 * 3 2 1 28 28 H 1.09001 * 109.47002 * 274.32619 * 5 4 2 29 29 H 1.08993 * 109.46955 * 34.33056 * 5 4 2 30 30 H 1.09000 * 109.47050 * 154.32885 * 5 4 2 31 31 H 1.08999 * 117.49462 * 214.97135 * 6 4 2 32 32 H 1.08995 * 117.49827 * 359.97438 * 6 4 2 33 33 H 1.00904 * 111.00501 * 278.95060 * 9 7 4 34 34 H 1.09003 * 109.47019 * 300.00106 * 10 9 7 35 35 H 1.08999 * 109.46879 * 60.00085 * 10 9 7 36 36 H 1.09003 * 109.47055 * 299.99952 * 11 10 9 37 37 H 1.08995 * 109.46997 * 59.99670 * 11 10 9 38 38 H 1.09003 * 109.47071 * 299.99862 * 12 11 10 39 39 H 1.08999 * 109.47062 * 59.99984 * 12 11 10 40 40 H 0.96998 * 119.99693 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.1861 -0.5463 2.5069 6 6 2.7399 -2.0673 1.0523 7 6 3.5549 -0.8298 1.4335 8 1 3.9433 -0.7766 2.4505 9 7 4.4085 -0.2342 0.3970 10 6 5.7269 0.1197 0.9399 11 6 6.5853 0.7363 -0.1663 12 6 7.9586 1.1043 0.3991 13 6 8.8043 1.7110 -0.6907 14 1 8.4024 1.8233 -1.6869 15 6 10.0909 2.1236 -0.4158 16 7 10.8288 2.6536 -1.3668 17 14 10.7858 1.9300 1.3073 18 1 11.4497 0.6072 1.4275 19 1 11.7760 3.0061 1.5654 20 1 9.6840 2.0228 2.2987 21 1 -0.3634 0.5139 0.8898 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5140 -0.8898 25 1 1.6766 1.9564 0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9562 -0.8901 28 1 1.4801 0.3687 3.0213 29 1 0.1347 -0.4837 2.2264 30 1 1.3354 -1.3992 3.1689 31 1 2.5922 -2.8282 1.8186 32 1 2.8369 -2.4396 0.0325 33 1 4.4980 -0.8512 -0.3964 34 1 5.6052 0.8400 1.7490 35 1 6.2150 -0.7768 1.3220 36 1 6.7071 0.0163 -0.9756 37 1 6.0970 1.6328 -0.5481 38 1 7.8372 1.8241 1.2086 39 1 8.4466 0.2074 0.7805 40 1 11.7340 2.9435 -1.1735 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397287697.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:09 Heat of formation + Delta-G solvation = -1.612604 kcal Electronic energy + Delta-G solvation = -15636.919149 eV Core-core repulsion = 13258.424588 eV Total energy + Delta-G solvation = -2378.494561 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.31155 -35.60951 -33.61738 -32.54406 -30.82121 -28.38287 -26.77205 -26.11615 -22.49779 -22.26566 -21.56587 -20.02586 -18.10347 -16.70953 -15.73761 -15.41917 -15.12657 -14.18409 -14.03796 -13.50515 -13.44088 -13.16515 -12.87996 -12.55286 -12.43312 -12.13448 -11.93084 -11.67266 -11.57774 -11.14003 -11.00513 -10.87021 -10.76263 -10.46307 -10.35250 -9.94048 -9.82105 -9.67883 -9.40604 -9.14367 -8.51519 -7.93232 -6.01920 -3.99576 3.31838 3.39248 3.43189 3.72666 4.19574 4.47196 4.67082 4.79974 4.91309 5.09358 5.25460 5.32123 5.39494 5.48350 5.59397 5.67525 5.71227 5.73636 5.80215 5.81336 5.86281 5.92198 6.03564 6.09440 6.11520 6.18282 6.34947 6.51478 6.57399 6.61607 6.84890 6.92860 7.25396 7.37570 7.45238 7.55964 7.82674 8.57326 9.03718 9.60794 11.11714 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046632 B = 0.004665 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.296409 B = 6000.748805 C = 6266.363365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C -0.152 4.152 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.203 4.203 7 C 0.036 3.964 8 H 0.104 0.896 9 N -0.652 5.652 10 C 0.057 3.943 11 C -0.100 4.100 12 C -0.013 4.013 13 C -0.519 4.519 14 H 0.072 0.928 15 C 0.065 3.935 16 N -0.905 5.905 17 Si 0.880 3.120 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.266 1.266 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.041 0.959 26 H 0.095 0.905 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.340 0.660 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.016 0.984 39 H 0.009 0.991 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.272 -7.801 6.540 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 C -0.209 4.209 4 C -0.113 4.113 5 C -0.177 4.177 6 C -0.242 4.242 7 C -0.075 4.075 8 H 0.122 0.878 9 N -0.281 5.281 10 C -0.071 4.071 11 C -0.138 4.138 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.090 0.910 15 C -0.136 4.136 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.190 1.190 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.060 0.940 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.034 0.966 39 H 0.027 0.973 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.320 -7.075 6.579 21.601 hybrid contribution 0.905 -1.026 0.939 1.660 sum -18.415 -8.101 7.518 21.477 Atomic orbital electron populations 1.21968 0.96232 1.01057 1.01383 1.20418 0.94050 0.96701 0.95072 1.21961 1.04939 0.94220 0.99829 1.21768 0.94025 0.98347 0.97161 1.21452 0.99637 1.01383 0.95215 1.23720 1.06537 0.91544 1.02365 1.22555 0.91237 0.97712 0.96038 0.87810 1.60289 1.13995 1.45885 1.07910 1.22210 0.87340 0.98741 0.98824 1.21447 0.95954 1.00051 0.96316 1.19539 0.92476 0.95964 0.97088 1.21155 0.97630 1.39749 0.97122 0.91035 1.25043 0.96962 0.94692 0.96882 1.69921 1.09520 1.42298 1.32670 0.86768 0.78998 0.77825 0.85623 1.20388 1.21404 1.19039 0.92506 0.93068 0.93201 0.91647 0.94018 0.88624 0.94042 0.92339 0.91534 0.93004 0.89241 0.88923 0.84075 0.91388 0.95615 0.93064 0.91905 0.96618 0.97309 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.20 37.16 0.30 -1.09 16 2 C -0.04 -0.48 2.66 -90.62 -0.24 -0.72 16 3 C -0.15 -1.86 8.99 37.16 0.33 -1.53 16 4 C -0.11 -1.19 1.91 -154.50 -0.29 -1.49 16 5 C -0.12 -1.12 9.49 37.16 0.35 -0.77 16 6 C -0.20 -2.11 9.52 -26.73 -0.25 -2.36 16 7 C 0.04 0.43 5.82 -67.71 -0.39 0.03 16 8 H 0.10 1.26 7.90 -51.93 -0.41 0.85 16 9 N -0.65 -8.88 4.01 -106.72 -0.43 -9.31 16 10 C 0.06 0.92 5.54 -3.82 -0.02 0.90 16 11 C -0.10 -1.97 5.41 -26.73 -0.14 -2.11 16 12 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 13 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 14 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -28.29 13.96 55.43 0.77 -27.51 16 17 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 H 0.06 0.50 6.44 -51.93 -0.33 0.17 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 24 H 0.07 0.75 7.90 -51.93 -0.41 0.34 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.10 1.36 5.78 -51.93 -0.30 1.06 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.57 5.58 -51.93 -0.29 0.28 16 30 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 31 H 0.09 0.85 8.05 -51.93 -0.42 0.43 16 32 H 0.09 0.95 8.00 -51.93 -0.42 0.53 16 33 H 0.34 4.46 8.52 -39.29 -0.33 4.12 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 39 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 313.33 15.07 4.72 4.72 Total: -1.00 -29.79 313.33 -7.98 -37.78 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.48 Total: 0.07 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -0.90 Total: -23.07 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.35 Total: -36.82 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.79 -7.98 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397287697.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.165 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds