Wall clock time and date at job start Mon Mar 30 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 C 1.53008 * 109.46933 * 240.00160 * 2 1 3 5 5 C 1.53000 * 109.47084 * 120.00409 * 2 1 3 6 6 C 1.52997 * 109.47205 * 59.99957 * 5 2 1 7 7 N 1.46908 * 109.46710 * 180.02562 * 6 5 2 8 8 C 1.47842 * 110.99863 * 69.15515 * 7 6 5 9 9 C 1.54914 * 104.79104 * 146.36307 * 8 7 6 10 10 C 1.55137 * 101.65255 * 322.92832 * 9 8 7 11 11 H 1.09007 * 110.85374 * 277.20139 * 10 9 8 12 12 C 1.50700 * 110.70545 * 154.03921 * 10 9 8 13 13 H 1.07999 * 119.99988 * 246.39764 * 12 10 9 14 14 C 1.37885 * 120.00047 * 66.39943 * 12 10 9 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 10 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 C 1.47443 * 110.99536 * 189.99681 * 7 6 5 21 21 H 1.08996 * 109.47207 * 300.00022 * 1 2 3 22 22 H 1.09004 * 109.47297 * 59.99814 * 1 2 3 23 23 H 1.08994 * 109.46975 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46855 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46914 * 299.99871 * 3 2 1 26 26 H 1.08996 * 109.47039 * 59.99874 * 3 2 1 27 27 H 1.08999 * 109.46945 * 299.99776 * 4 2 1 28 28 H 1.08999 * 109.46939 * 60.00364 * 4 2 1 29 29 H 1.09004 * 109.46920 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.46930 * 299.99397 * 5 2 1 31 31 H 1.09009 * 109.46771 * 179.97438 * 5 2 1 32 32 H 1.08996 * 109.47354 * 60.00266 * 6 5 2 33 33 H 1.08997 * 109.46749 * 299.99793 * 6 5 2 34 34 H 1.08998 * 110.37413 * 265.18352 * 8 7 6 35 35 H 1.08996 * 110.37780 * 27.53259 * 8 7 6 36 36 H 1.09005 * 110.98803 * 204.83368 * 9 8 7 37 37 H 1.08997 * 110.99204 * 81.02479 * 9 8 7 38 38 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.88829 * 117.33627 * 20 7 6 40 40 H 1.09000 * 109.89140 * 356.14720 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2491 7 7 2.0192 -2.8561 2.4489 8 6 1.3736 -2.3241 3.6679 9 6 1.2482 -3.5444 4.6138 10 6 0.9210 -4.6841 3.6133 11 1 -0.1429 -4.6990 3.3766 12 6 1.3618 -6.0170 4.1613 13 1 2.1612 -6.5609 3.6802 14 6 0.7444 -6.5420 5.2768 15 7 -0.2255 -5.8771 5.8658 16 14 1.2912 -8.1938 5.9563 17 1 2.3962 -8.7310 5.1222 18 1 1.7635 -8.0223 7.3537 19 1 0.1482 -9.1416 5.9329 20 6 1.7514 -4.3039 2.3695 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2073 -2.1393 29 1 3.1300 -0.7217 -1.2491 30 1 1.6767 -0.2075 2.1392 31 1 3.1300 -0.7217 1.2489 32 1 1.8933 -2.6776 0.3592 33 1 0.4400 -2.1637 1.2491 34 1 1.9972 -1.5543 4.1224 35 1 0.3876 -1.9243 3.4315 36 1 0.4350 -3.4045 5.3260 37 1 2.1887 -3.7363 5.1304 38 1 -0.6600 -6.2467 6.6503 39 1 2.6916 -4.8554 2.3687 40 1 1.1870 -4.5275 1.4643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397616395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:11 Heat of formation + Delta-G solvation = -26.675140 kcal Electronic energy + Delta-G solvation = -16136.875067 eV Core-core repulsion = 13757.293712 eV Total energy + Delta-G solvation = -2379.581355 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.68259 -37.06718 -33.12667 -30.95029 -28.21580 -27.70511 -27.26710 -27.22489 -24.22998 -22.47627 -19.89590 -19.45182 -18.42816 -16.47425 -15.41711 -14.81470 -14.69654 -14.45927 -13.92637 -13.68235 -13.49815 -12.55229 -12.50144 -12.32436 -12.05571 -11.74280 -11.67828 -11.63029 -11.16643 -11.01702 -10.92382 -10.72797 -10.62575 -10.42809 -10.32357 -10.18716 -10.01682 -9.60018 -9.22166 -8.82166 -8.37311 -7.50274 -6.00642 -4.02852 3.30955 3.38937 3.43319 4.44775 4.59390 4.85728 4.87069 5.03577 5.32288 5.41341 5.53757 5.59201 5.65888 5.73574 5.77628 5.87409 5.88370 5.94337 5.97341 6.08390 6.09543 6.18775 6.27234 6.29445 6.34104 6.40990 6.52651 6.56249 6.67156 6.91986 7.19788 7.24123 7.63648 7.66309 7.91018 7.94638 8.03469 8.44662 8.99348 9.61039 11.09603 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062142 B = 0.005209 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.474597 B = 5373.814973 C = 5505.633076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.101 4.101 6 C 0.050 3.950 7 N -0.535 5.535 8 C 0.039 3.961 9 C -0.105 4.105 10 C 0.034 3.966 11 H 0.029 0.971 12 C -0.509 4.509 13 H 0.058 0.942 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.048 3.952 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.031 0.969 34 H 0.059 0.941 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.259 0.741 39 H 0.068 0.932 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 11.411 -10.128 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.196 4.196 4 C -0.200 4.200 5 C -0.139 4.139 6 C -0.079 4.079 7 N -0.259 5.259 8 C -0.089 4.089 9 C -0.144 4.144 10 C 0.014 3.986 11 H 0.047 0.953 12 C -0.547 4.547 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.079 4.079 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.727 11.480 -9.964 15.444 hybrid contribution -0.706 -1.007 0.409 1.296 sum 2.021 10.473 -9.555 14.320 Atomic orbital electron populations 1.21936 0.94891 1.02054 1.01234 1.20552 0.95534 0.95244 0.95765 1.21851 1.00877 0.95566 1.01331 1.21922 1.00958 1.00494 0.96586 1.21591 1.00994 0.94988 0.96366 1.22382 0.97093 0.94405 0.93976 1.63590 1.56323 1.04377 1.01622 1.23119 0.95454 0.98598 0.91724 1.22633 1.01001 0.93100 0.97653 1.19813 0.94786 0.94229 0.89724 0.95282 1.21137 1.18463 1.03389 1.11756 0.92417 1.24987 0.94885 0.97342 0.96764 1.69978 1.24049 1.38050 1.20908 0.86553 0.78560 0.84102 0.78901 1.19725 1.21044 1.21114 1.22977 0.99775 0.86352 0.98835 0.92798 0.93150 0.92249 0.92755 0.93035 0.92809 0.92281 0.93189 0.92692 0.92191 0.91513 0.91538 0.95129 0.92302 0.95124 0.91382 0.92546 0.93150 0.91415 0.95070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.12 37.16 0.30 -1.30 16 2 C -0.07 -0.79 0.80 -154.50 -0.12 -0.91 16 3 C -0.14 -1.36 8.47 37.16 0.31 -1.05 16 4 C -0.14 -1.51 8.12 37.16 0.30 -1.20 16 5 C -0.10 -1.38 4.31 -26.73 -0.12 -1.49 16 6 C 0.05 0.80 3.86 -3.82 -0.01 0.79 16 7 N -0.54 -10.47 5.16 -231.25 -1.19 -11.67 16 8 C 0.04 0.77 5.78 -2.30 -0.01 0.76 16 9 C -0.11 -2.52 5.94 -24.59 -0.15 -2.66 16 10 C 0.03 0.86 2.78 -89.95 -0.25 0.61 16 11 H 0.03 0.81 8.14 -51.92 -0.42 0.38 16 12 C -0.51 -14.16 8.47 -34.44 -0.29 -14.45 16 13 H 0.06 1.59 7.53 -52.49 -0.40 1.19 16 14 C 0.06 1.73 5.36 -17.82 -0.10 1.63 16 15 N -0.89 -25.86 12.47 55.43 0.69 -25.17 16 16 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C 0.05 1.04 6.45 -2.84 -0.02 1.03 16 21 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.85 7.49 -51.93 -0.39 0.46 16 31 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 32 H 0.07 1.03 6.32 -51.93 -0.33 0.70 16 33 H 0.03 0.51 6.13 -51.93 -0.32 0.19 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.03 0.60 7.62 -51.93 -0.40 0.20 16 36 H 0.07 1.73 7.75 -51.93 -0.40 1.32 16 37 H 0.06 1.40 8.04 -51.93 -0.42 0.99 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.07 1.53 7.63 -51.93 -0.40 1.13 16 40 H 0.03 0.64 7.55 -51.93 -0.39 0.25 16 LS Contribution 305.62 15.07 4.61 4.61 Total: -1.00 -28.24 305.62 -8.53 -36.78 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -7.47 Total: -2.73 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -0.15 Total: -18.26 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: -0.50 Total: -36.84 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.24 -8.53 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397616395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.101 kcal (2) G-P(sol) polarization free energy of solvation -28.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds