Wall clock time and date at job start Mon Mar 30 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 C 1.53008 * 109.46933 * 240.00160 * 2 1 3 5 5 C 1.53000 * 109.47084 * 120.00409 * 2 1 3 6 6 C 1.52997 * 109.47205 * 59.99957 * 5 2 1 7 7 N 1.46908 * 109.46710 * 180.02562 * 6 5 2 8 8 C 1.47842 * 110.99863 * 69.15515 * 7 6 5 9 9 C 1.54914 * 104.79104 * 146.36307 * 8 7 6 10 10 C 1.55137 * 101.65255 * 322.92832 * 9 8 7 11 11 H 1.09007 * 110.85374 * 277.20139 * 10 9 8 12 12 C 1.50700 * 110.70545 * 154.03921 * 10 9 8 13 13 H 1.07999 * 119.99988 * 246.39764 * 12 10 9 14 14 C 1.37885 * 120.00047 * 66.39943 * 12 10 9 15 15 N 1.31518 * 119.99792 * 359.72305 * 14 12 10 16 16 Si 1.86795 * 120.00009 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47021 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47081 * 119.99727 * 16 14 12 19 19 H 1.48501 * 109.47213 * 240.00099 * 16 14 12 20 20 C 1.47443 * 110.99536 * 189.99681 * 7 6 5 21 21 H 1.08996 * 109.47207 * 300.00022 * 1 2 3 22 22 H 1.09004 * 109.47297 * 59.99814 * 1 2 3 23 23 H 1.08994 * 109.46975 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46855 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.46914 * 299.99871 * 3 2 1 26 26 H 1.08996 * 109.47039 * 59.99874 * 3 2 1 27 27 H 1.08999 * 109.46945 * 299.99776 * 4 2 1 28 28 H 1.08999 * 109.46939 * 60.00364 * 4 2 1 29 29 H 1.09004 * 109.46920 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.46930 * 299.99397 * 5 2 1 31 31 H 1.09009 * 109.46771 * 179.97438 * 5 2 1 32 32 H 1.08996 * 109.47354 * 60.00266 * 6 5 2 33 33 H 1.08997 * 109.46749 * 299.99793 * 6 5 2 34 34 H 1.08998 * 110.37413 * 265.18352 * 8 7 6 35 35 H 1.08996 * 110.37780 * 27.53259 * 8 7 6 36 36 H 1.09005 * 110.98803 * 204.83368 * 9 8 7 37 37 H 1.08997 * 110.99204 * 81.02479 * 9 8 7 38 38 H 0.97000 * 119.99468 * 179.97438 * 15 14 12 39 39 H 1.09003 * 109.88829 * 117.33627 * 20 7 6 40 40 H 1.09000 * 109.89140 * 356.14720 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.5300 -2.1638 1.2491 7 7 2.0192 -2.8561 2.4489 8 6 1.3736 -2.3241 3.6679 9 6 1.2482 -3.5444 4.6138 10 6 0.9210 -4.6841 3.6133 11 1 -0.1429 -4.6990 3.3766 12 6 1.3618 -6.0170 4.1613 13 1 2.1612 -6.5609 3.6802 14 6 0.7444 -6.5420 5.2768 15 7 -0.2255 -5.8771 5.8658 16 14 1.2912 -8.1938 5.9563 17 1 2.3962 -8.7310 5.1222 18 1 1.7635 -8.0223 7.3537 19 1 0.1482 -9.1416 5.9329 20 6 1.7514 -4.3039 2.3695 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6766 -1.7489 -1.2493 28 1 1.6766 -0.2073 -2.1393 29 1 3.1300 -0.7217 -1.2491 30 1 1.6767 -0.2075 2.1392 31 1 3.1300 -0.7217 1.2489 32 1 1.8933 -2.6776 0.3592 33 1 0.4400 -2.1637 1.2491 34 1 1.9972 -1.5543 4.1224 35 1 0.3876 -1.9243 3.4315 36 1 0.4350 -3.4045 5.3260 37 1 2.1887 -3.7363 5.1304 38 1 -0.6600 -6.2467 6.6503 39 1 2.6916 -4.8554 2.3687 40 1 1.1870 -4.5275 1.4643 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397616395.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:11 Heat of formation + Delta-G solvation = -42.580515 kcal Electronic energy + Delta-G solvation = -16137.564776 eV Core-core repulsion = 13757.293712 eV Total energy + Delta-G solvation = -2380.271063 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.10629 -38.33814 -35.07799 -32.65913 -30.03814 -29.13957 -28.12294 -28.08163 -26.19607 -23.86151 -21.64236 -21.26692 -19.40138 -18.57558 -16.93242 -16.45358 -16.14068 -15.84975 -15.13495 -14.89946 -14.68028 -14.34306 -13.91920 -13.65986 -13.52698 -13.01123 -12.98942 -12.79274 -12.64847 -12.53170 -12.49170 -12.35037 -12.09039 -11.83553 -11.58367 -11.43510 -11.37563 -11.27835 -11.03485 -10.89776 -10.50638 -9.12107 -8.15418 -6.25130 1.40089 1.41756 1.53778 2.42405 3.15682 3.17554 3.89380 3.96417 4.00068 4.17760 4.20954 4.41608 4.47314 4.54112 4.63683 4.68834 4.72851 4.81963 4.87103 4.90017 4.96566 4.98829 5.08145 5.09663 5.15206 5.22664 5.26331 5.27161 5.34616 5.45350 5.56649 5.57288 5.57811 5.70929 5.86386 6.17270 6.31997 6.38514 6.83823 7.42520 8.94606 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062142 B = 0.005209 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.474597 B = 5373.814973 C = 5505.633076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.068 4.068 3 C -0.136 4.136 4 C -0.142 4.142 5 C -0.094 4.094 6 C 0.050 3.950 7 N -0.536 5.536 8 C 0.052 3.948 9 C -0.099 4.099 10 C 0.025 3.975 11 H -0.003 1.003 12 C -0.530 4.530 13 H 0.056 0.944 14 C 0.012 3.988 15 N -0.921 5.921 16 Si 0.958 3.042 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.059 3.941 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.026 0.974 34 H 0.080 0.920 35 H 0.036 0.964 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.061 0.939 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 12.155 -11.125 16.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 C -0.193 4.193 4 C -0.199 4.199 5 C -0.132 4.132 6 C -0.077 4.077 7 N -0.260 5.260 8 C -0.075 4.075 9 C -0.138 4.138 10 C 0.006 3.994 11 H 0.015 0.985 12 C -0.568 4.568 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.561 5.561 16 Si 0.783 3.217 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.069 4.069 21 H 0.069 0.931 22 H 0.084 0.916 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.510 12.234 -10.976 16.807 hybrid contribution -0.977 -1.223 0.696 1.713 sum 2.533 11.012 -10.280 15.276 Atomic orbital electron populations 1.21936 0.94869 1.01407 1.01906 1.20538 0.95512 0.96012 0.94767 1.21822 1.01106 0.94408 1.02012 1.21916 1.01138 1.00014 0.96829 1.21536 1.00825 0.93251 0.97583 1.22484 0.96884 0.95793 0.92572 1.63618 1.56478 1.03156 1.02794 1.22995 0.96362 0.97156 0.91011 1.22432 0.99164 0.94666 0.97545 1.19786 0.93417 0.94299 0.91893 0.98453 1.21476 1.18578 1.04558 1.12174 0.92611 1.25787 0.94885 1.00953 0.97027 1.70097 1.25001 1.39675 1.21302 0.85510 0.78325 0.79681 0.78185 1.18969 1.20580 1.20563 1.22752 0.98720 0.88002 0.97410 0.93072 0.91593 0.93534 0.92407 0.91703 0.92836 0.93218 0.91737 0.92426 0.92679 0.91606 0.90734 0.95598 0.90194 0.94585 0.93654 0.94003 0.93020 0.92082 0.94153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.12 71.98 0.58 -2.34 16 2 C -0.07 -1.36 0.80 -52.18 -0.04 -1.40 16 3 C -0.14 -2.30 8.47 71.98 0.61 -1.69 16 4 C -0.14 -2.66 8.12 71.98 0.58 -2.07 16 5 C -0.09 -2.37 4.31 30.59 0.13 -2.24 16 6 C 0.05 1.55 3.86 86.30 0.33 1.89 16 7 N -0.54 -20.47 5.16 -885.55 -4.57 -25.04 16 8 C 0.05 2.05 5.78 86.78 0.50 2.56 16 9 C -0.10 -4.84 5.94 31.98 0.19 -4.65 16 10 C 0.03 1.32 2.78 -10.36 -0.03 1.29 16 11 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 12 C -0.53 -29.94 8.47 25.60 0.22 -29.72 16 13 H 0.06 3.09 7.53 -2.91 -0.02 3.07 16 14 C 0.01 0.69 5.36 84.66 0.45 1.14 16 15 N -0.92 -54.48 12.47 21.45 0.27 -54.21 16 16 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 C 0.06 2.57 6.45 86.64 0.56 3.13 16 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 23 H 0.05 1.05 6.43 -2.39 -0.02 1.04 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 1.02 6.43 -2.39 -0.02 1.00 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.05 1.44 7.49 -2.39 -0.02 1.43 16 31 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.07 2.19 6.32 -2.39 -0.02 2.18 16 33 H 0.03 0.84 6.13 -2.39 -0.01 0.82 16 34 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 35 H 0.04 1.38 7.62 -2.39 -0.02 1.36 16 36 H 0.04 2.37 7.75 -2.38 -0.02 2.35 16 37 H 0.04 2.11 8.04 -2.39 -0.02 2.10 16 38 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.06 2.74 7.63 -2.39 -0.02 2.73 16 40 H 0.04 1.66 7.55 -2.39 -0.02 1.64 16 Total: -1.00 -60.20 305.62 2.78 -57.42 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.96 Total: 9.67 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 4.09 Total: -34.10 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -4.30 Total: -79.26 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -60.20 2.78 -57.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397616395.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.835 kcal (2) G-P(sol) polarization free energy of solvation -60.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds