Wall clock time and date at job start Mon Mar 30 2020 03:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 120.00168 * 2 1 4 4 H 1.08005 * 120.00033 * 157.34188 * 3 2 1 5 5 C 1.38806 * 120.00063 * 337.33971 * 3 2 1 6 6 N 1.31622 * 120.00197 * 328.41272 * 5 3 2 7 7 Si 1.86800 * 120.00245 * 148.41036 * 5 3 2 8 8 H 1.48497 * 109.47380 * 180.02562 * 7 5 3 9 9 H 1.48501 * 109.46827 * 300.00029 * 7 5 3 10 10 H 1.48500 * 109.46954 * 59.99996 * 7 5 3 11 11 C 1.46502 * 119.99988 * 179.97438 * 2 1 3 12 12 H 1.09002 * 108.87379 * 180.02562 * 11 2 1 13 13 C 1.54247 * 108.89362 * 61.39595 * 11 2 1 14 14 C 1.50554 * 108.48104 * 159.17849 * 13 11 2 15 15 C 1.54074 * 112.41524 * 94.26855 * 14 13 11 16 16 C 1.54066 * 112.81259 * 318.27693 * 15 14 13 17 17 C 1.52995 * 108.87495 * 197.50555 * 16 15 14 18 18 C 1.53001 * 108.87780 * 79.06403 * 16 15 14 19 19 C 1.50466 * 112.49781 * 318.28408 * 16 15 14 20 20 C 1.45543 * 108.89779 * 298.60836 * 11 2 1 21 21 H 1.09001 * 109.46795 * 95.32166 * 1 2 3 22 22 H 1.09001 * 109.46841 * 215.32591 * 1 2 3 23 23 H 1.09002 * 109.46726 * 335.32845 * 1 2 3 24 24 H 0.97003 * 119.99503 * 358.53700 * 6 5 3 25 25 H 1.08998 * 109.62969 * 278.97366 * 13 11 2 26 26 H 1.09003 * 109.62846 * 39.55293 * 13 11 2 27 27 H 1.09002 * 108.92750 * 333.51262 * 14 13 11 28 28 H 1.08999 * 108.91305 * 215.01808 * 14 13 11 29 29 H 1.09001 * 108.81149 * 197.41890 * 15 14 13 30 30 H 1.08994 * 108.81043 * 79.13522 * 15 14 13 31 31 H 1.08998 * 109.47210 * 182.97384 * 17 16 15 32 32 H 1.09006 * 109.47537 * 302.97683 * 17 16 15 33 33 H 1.09005 * 109.47256 * 62.97679 * 17 16 15 34 34 H 1.09007 * 109.46959 * 284.95573 * 18 16 15 35 35 H 1.09004 * 109.47284 * 44.95169 * 18 16 15 36 36 H 1.09001 * 109.47158 * 164.95367 * 18 16 15 37 37 H 1.09002 * 109.62988 * 334.44291 * 19 16 15 38 38 H 1.09000 * 109.78950 * 213.96028 * 19 16 15 39 39 H 1.08997 * 108.89109 * 303.44022 * 20 11 2 40 40 H 1.08996 * 108.89528 * 61.92662 * 20 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1673 1.2220 0.3603 5 6 1.5361 2.3416 -0.4631 6 7 0.6359 2.2704 -1.4207 7 14 1.9878 3.9981 0.2727 8 1 1.1969 5.0663 -0.3897 9 1 1.6891 3.9916 1.7273 10 1 3.4360 4.2533 0.0658 11 6 2.1975 -1.2687 0.0006 12 1 3.2671 -1.0584 0.0009 13 6 1.8422 -2.0512 -1.2803 14 6 2.9287 -3.0605 -1.5399 15 6 2.5986 -4.4444 -0.9483 16 6 1.9709 -4.3593 0.4561 17 6 2.0817 -5.7277 1.1315 18 6 0.4908 -3.9980 0.3158 19 6 2.6427 -3.3314 1.3257 20 6 1.8622 -2.0061 1.2098 21 1 -0.3633 -0.0953 -1.0233 22 1 -0.3633 -0.8385 0.5942 23 1 -0.3633 0.9339 0.4290 24 1 0.4168 1.4128 -1.8175 25 1 0.8896 -2.5631 -1.1443 26 1 1.7742 -1.3629 -2.1228 27 1 3.8582 -2.7009 -1.0984 28 1 3.0676 -3.1612 -2.6163 29 1 3.5166 -5.0290 -0.8883 30 1 1.9024 -4.9542 -1.6142 31 1 1.5935 -5.6928 2.1053 32 1 1.5977 -6.4804 0.5091 33 1 3.1331 -5.9848 1.2612 34 1 0.3970 -2.9417 0.0636 35 1 0.0428 -4.6013 -0.4738 36 1 -0.0218 -4.1936 1.2577 37 1 3.6691 -3.1825 0.9904 38 1 2.6414 -3.6675 2.3626 39 1 2.0900 -1.3853 2.0762 40 1 0.7944 -2.2245 1.2054 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606268470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:18 Heat of formation + Delta-G solvation = 9.660244 kcal Electronic energy + Delta-G solvation = -17150.000011 eV Core-core repulsion = 14771.994277 eV Total energy + Delta-G solvation = -2378.005734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.35674 -37.65627 -34.61287 -33.44164 -31.58950 -28.88406 -28.28270 -27.64216 -25.86033 -24.08326 -22.79057 -20.56048 -19.44979 -18.92724 -16.93368 -16.93072 -15.87206 -15.57585 -15.39985 -15.35265 -14.70580 -14.15498 -13.93541 -13.63447 -13.43312 -13.22505 -12.96907 -12.80187 -12.70444 -12.50509 -12.35893 -11.99821 -11.91745 -11.79246 -11.64973 -11.48603 -11.22251 -11.10676 -10.92929 -10.45351 -10.35234 -8.91285 -8.31948 -5.30406 1.55935 1.63877 1.83108 2.64920 3.19893 3.49202 3.75681 3.84745 3.98104 4.11096 4.22662 4.36446 4.42955 4.49233 4.57330 4.68876 4.79772 4.80674 4.85368 4.86840 4.91597 5.00496 5.02748 5.10547 5.11995 5.14862 5.24001 5.26737 5.30927 5.42616 5.46124 5.57429 5.58191 5.71109 5.77102 5.85731 6.39749 7.10334 7.84341 8.23775 8.99091 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048503 B = 0.007329 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.143961 B = 3819.760980 C = 3872.667136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.149 3.851 2 N -0.620 5.620 3 C -0.365 4.365 4 H 0.046 0.954 5 C -0.075 4.075 6 N -0.938 5.938 7 Si 1.111 2.889 8 H -0.291 1.291 9 H -0.282 1.282 10 H -0.277 1.277 11 C 0.181 3.819 12 H 0.031 0.969 13 C -0.139 4.139 14 C -0.109 4.109 15 C -0.097 4.097 16 C -0.059 4.059 17 C -0.135 4.135 18 C -0.173 4.173 19 C -0.095 4.095 20 C -0.137 4.137 21 H -0.009 1.009 22 H 0.046 0.954 23 H 0.022 0.978 24 H 0.255 0.745 25 H 0.089 0.911 26 H 0.019 0.981 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.035 0.965 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.354 -15.668 4.443 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.344 5.344 3 C -0.495 4.495 4 H 0.064 0.936 5 C -0.272 4.272 6 N -0.580 5.580 7 Si 0.936 3.064 8 H -0.217 1.217 9 H -0.208 1.208 10 H -0.203 1.203 11 C 0.076 3.924 12 H 0.050 0.950 13 C -0.178 4.178 14 C -0.148 4.148 15 C -0.135 4.135 16 C -0.059 4.059 17 C -0.193 4.193 18 C -0.229 4.229 19 C -0.133 4.133 20 C -0.175 4.175 21 H 0.009 0.991 22 H 0.065 0.935 23 H 0.041 0.959 24 H 0.065 0.935 25 H 0.107 0.893 26 H 0.038 0.962 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.054 -14.041 4.397 14.856 hybrid contribution 0.309 -1.101 -0.339 1.193 sum 2.363 -15.143 4.058 15.854 Atomic orbital electron populations 1.20708 0.84075 0.98364 0.96477 1.44388 1.01257 1.02009 1.86734 1.20157 0.99979 0.88390 1.40941 0.93639 1.27068 0.99346 1.05217 0.95535 1.70933 1.38717 1.27284 1.21076 0.82892 0.75925 0.72029 0.75515 1.21674 1.20815 1.20312 1.19436 0.94176 0.84897 0.93900 0.95048 1.22165 1.01045 0.97224 0.97383 1.21238 0.97857 0.95471 1.00187 1.21971 1.00997 0.95333 0.95176 1.20212 0.95186 0.95764 0.94788 1.21939 1.02037 0.95105 1.00181 1.22779 0.95864 1.02608 1.01639 1.21297 0.98787 0.93314 0.99911 1.21148 1.02580 0.96484 0.97275 0.99102 0.93542 0.95893 0.93509 0.89340 0.96209 0.93260 0.92534 0.91017 0.91622 0.92364 0.92111 0.92132 0.90790 0.92504 0.92412 0.92391 0.90770 0.94653 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 7.38 8.37 127.77 1.07 8.45 16 2 N -0.62 -32.17 2.61 -713.26 -1.86 -34.03 16 3 C -0.37 -21.38 9.38 84.03 0.79 -20.59 16 4 H 0.05 2.70 7.94 -2.91 -0.02 2.68 16 5 C -0.07 -4.41 4.53 84.86 0.38 -4.02 16 6 N -0.94 -59.01 12.80 21.65 0.28 -58.74 16 7 Si 1.11 52.78 30.02 68.60 2.06 54.84 16 8 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 11 C 0.18 7.65 2.04 43.14 0.09 7.74 16 12 H 0.03 1.44 7.15 -2.39 -0.02 1.42 16 13 C -0.14 -5.24 4.66 30.22 0.14 -5.10 16 14 C -0.11 -3.27 5.32 30.17 0.16 -3.11 16 15 C -0.10 -2.25 4.83 31.32 0.15 -2.10 16 16 C -0.06 -1.36 0.72 -52.64 -0.04 -1.40 16 17 C -0.14 -2.40 7.98 71.98 0.57 -1.83 16 18 C -0.17 -4.24 6.32 71.98 0.45 -3.79 16 19 C -0.09 -2.53 5.01 30.19 0.15 -2.38 16 20 C -0.14 -4.77 4.34 28.74 0.12 -4.65 16 21 H -0.01 -0.47 7.00 -2.39 -0.02 -0.48 16 22 H 0.05 1.94 6.23 -2.39 -0.01 1.93 16 23 H 0.02 1.22 7.11 -2.39 -0.02 1.20 16 24 H 0.25 16.33 6.36 -92.71 -0.59 15.74 16 25 H 0.09 3.08 4.24 -2.39 -0.01 3.07 16 26 H 0.02 0.87 8.13 -2.39 -0.02 0.85 16 27 H 0.05 1.54 6.63 -2.39 -0.02 1.52 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.43 7.98 -2.39 -0.02 1.41 16 30 H 0.07 1.40 7.73 -2.39 -0.02 1.38 16 31 H 0.06 0.99 8.06 -2.39 -0.02 0.97 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 2.24 2.45 -2.38 -0.01 2.23 16 35 H 0.06 1.27 7.77 -2.38 -0.02 1.25 16 36 H 0.06 1.30 8.04 -2.39 -0.02 1.28 16 37 H 0.06 1.59 6.98 -2.39 -0.02 1.57 16 38 H 0.07 1.74 7.68 -2.39 -0.02 1.72 16 39 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 40 H 0.08 2.78 3.35 -2.39 -0.01 2.77 16 Total: -1.00 -65.82 283.63 5.70 -60.12 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: 1.18 Total: 10.58 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 4.05 Total: -32.77 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -1.58 Total: -92.76 kcal Atomic # 14 Polarization: 52.78 SS G_CDS: 2.06 Total: 54.84 kcal Total: -65.82 5.70 -60.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606268470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.776 kcal (2) G-P(sol) polarization free energy of solvation -65.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds