Wall clock time and date at job start Mon Mar 30 2020 03:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 111.00005 * 2 1 4 4 C 1.52997 * 109.47114 * 293.95636 * 3 2 1 5 5 C 1.53006 * 109.47127 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47184 * 180.02562 * 5 4 3 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99809 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99912 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47123 * 90.00333 * 10 8 6 12 12 H 1.48506 * 109.46940 * 210.00455 * 10 8 6 13 13 H 1.48493 * 109.47121 * 329.99876 * 10 8 6 14 14 C 1.46896 * 110.99663 * 123.95412 * 2 1 3 15 15 C 1.52994 * 110.02193 * 295.34036 * 14 2 1 16 16 C 1.54274 * 110.02794 * 173.95119 * 14 2 1 17 17 C 1.54967 * 104.15877 * 217.13512 * 16 14 2 18 18 C 1.54886 * 102.77681 * 37.89257 * 17 16 14 19 19 C 1.53874 * 110.03395 * 56.73622 * 14 2 1 20 20 H 1.08997 * 109.47401 * 59.99501 * 1 2 3 21 21 H 1.09000 * 109.47175 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46714 * 299.99906 * 1 2 3 23 23 H 1.08996 * 109.47194 * 173.95804 * 3 2 1 24 24 H 1.09001 * 109.47271 * 53.95368 * 3 2 1 25 25 H 1.09001 * 109.47502 * 60.00479 * 4 3 2 26 26 H 1.09001 * 109.47289 * 300.00275 * 4 3 2 27 27 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 29 29 H 0.97004 * 119.99097 * 179.97438 * 9 8 6 30 30 H 1.09008 * 109.46868 * 60.70264 * 15 14 2 31 31 H 1.08998 * 109.47463 * 180.70029 * 15 14 2 32 32 H 1.08998 * 109.47466 * 300.70661 * 15 14 2 33 33 H 1.08995 * 110.48670 * 335.78498 * 16 14 2 34 34 H 1.08994 * 110.48600 * 98.42936 * 16 14 2 35 35 H 1.08993 * 110.72014 * 279.57454 * 17 16 14 36 36 H 1.09004 * 110.91750 * 156.29435 * 17 16 14 37 37 H 1.09000 * 110.48725 * 203.40666 * 18 17 16 38 38 H 1.08998 * 110.49178 * 80.75697 * 18 17 16 39 39 H 1.08998 * 110.03335 * 238.56092 * 19 14 2 40 40 H 1.08997 * 110.03640 * 359.94960 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1803 3.4856 -1.3185 6 6 1.8212 4.1616 -2.6166 7 1 1.2582 3.6259 -3.3667 8 6 2.2123 5.4634 -2.8472 9 7 1.8993 6.0531 -3.9804 10 14 3.1867 6.3896 -1.5503 11 1 4.6388 6.1756 -1.7755 12 1 2.8798 7.8397 -1.6423 13 1 2.8159 5.8899 -0.2020 14 6 1.9954 -0.7660 1.1376 15 6 1.6087 -0.0846 2.4517 16 6 3.5304 -0.8797 1.0330 17 6 3.8407 -2.3077 1.5489 18 6 2.6630 -3.1397 0.9832 19 6 1.4440 -2.2022 1.1063 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 3.0797 1.3444 0.1082 24 1 1.5611 1.9273 0.8309 25 1 0.5471 2.0845 -1.4264 26 1 2.0657 1.5015 -2.1492 27 1 1.7463 4.0418 -0.4875 28 1 3.2645 3.4582 -1.2105 29 1 2.1742 6.9692 -4.1424 30 1 0.5225 -0.0424 2.5332 31 1 2.0140 -0.6531 3.2888 32 1 2.0139 0.9271 2.4694 33 1 3.8513 -0.7703 -0.0028 34 1 4.0121 -0.1325 1.6636 35 1 3.8426 -2.3321 2.6385 36 1 4.7914 -2.6660 1.1541 37 1 2.5126 -4.0409 1.5775 38 1 2.8435 -3.3956 -0.0608 39 1 0.9017 -2.4141 2.0278 40 1 0.7851 -2.3307 0.2476 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618779818.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:02 Heat of formation + Delta-G solvation = -18.945237 kcal Electronic energy + Delta-G solvation = -16181.299623 eV Core-core repulsion = 13802.053462 eV Total energy + Delta-G solvation = -2379.246161 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69989 -35.80479 -33.47873 -31.58406 -29.82317 -29.07773 -26.99026 -25.88903 -24.42692 -21.88810 -20.60310 -19.82940 -18.32536 -16.63231 -16.35666 -15.31759 -14.89141 -14.38710 -14.01675 -13.88461 -13.68766 -13.30577 -12.69050 -12.57242 -12.06969 -11.95142 -11.79650 -11.50504 -11.20906 -11.10607 -10.94352 -10.90002 -10.75630 -10.59294 -10.53772 -10.42734 -9.84478 -9.60389 -9.49350 -9.11888 -8.49473 -7.98457 -6.00083 -3.97334 3.33186 3.40157 3.44240 4.13701 4.48422 4.48854 4.63999 4.90602 5.22002 5.28493 5.33886 5.36073 5.43090 5.48648 5.54234 5.63648 5.76175 5.78810 5.82171 5.86556 5.90184 5.96167 5.99645 6.05498 6.13798 6.24779 6.28691 6.32009 6.37094 6.62645 6.68372 6.98662 7.36478 7.38492 7.48673 7.53885 7.85491 8.60000 9.05861 9.62919 11.13615 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043208 B = 0.005536 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.879851 B = 5056.649763 C = 5244.044683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.528 5.528 3 C 0.051 3.949 4 C -0.097 4.097 5 C -0.013 4.013 6 C -0.517 4.517 7 H 0.071 0.929 8 C 0.065 3.935 9 N -0.906 5.906 10 Si 0.880 3.120 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.267 1.267 14 C 0.103 3.897 15 C -0.176 4.176 16 C -0.113 4.113 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.116 4.116 20 H 0.074 0.926 21 H 0.064 0.936 22 H 0.023 0.977 23 H 0.069 0.931 24 H 0.029 0.971 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.012 0.988 28 H 0.010 0.990 29 H 0.262 0.738 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.834 -16.375 13.256 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.251 5.251 3 C -0.076 4.076 4 C -0.135 4.135 5 C -0.051 4.051 6 C -0.555 4.555 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.545 5.545 10 Si 0.708 3.292 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.191 1.191 14 C 0.014 3.986 15 C -0.235 4.235 16 C -0.150 4.150 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.153 4.153 20 H 0.093 0.907 21 H 0.082 0.918 22 H 0.041 0.959 23 H 0.088 0.912 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.996 -16.431 12.721 20.803 hybrid contribution 0.186 1.126 1.358 1.774 sum 1.182 -15.305 14.079 20.829 Atomic orbital electron populations 1.22488 0.88214 1.01328 1.01094 1.62410 1.07446 1.14641 1.40624 1.22339 0.99672 0.86869 0.98736 1.21472 1.00448 0.96762 0.94827 1.19551 0.95641 0.92345 0.97572 1.21160 1.35331 0.97814 1.01162 0.91055 1.25039 0.95741 0.97540 0.95266 1.69928 1.47201 1.13255 1.24105 0.86774 0.80688 0.78881 0.82902 1.20304 1.21454 1.19127 1.21724 0.94922 0.93312 0.88693 1.22500 1.01480 1.01286 0.98241 1.22475 0.93985 0.96388 1.02191 1.22468 0.98171 0.95458 0.99983 1.22297 0.94913 0.97485 1.01082 1.22313 0.97957 0.93284 1.01787 0.90726 0.91764 0.95876 0.91248 0.95327 0.92918 0.92131 0.96977 0.97161 0.92827 0.92636 0.92418 0.92260 0.90160 0.91952 0.91966 0.91679 0.92191 0.91436 0.92156 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.62 60.07 0.52 0.75 16 2 N -0.53 -7.81 4.50 -225.87 -1.02 -8.82 16 3 C 0.05 0.87 4.10 -3.83 -0.02 0.85 16 4 C -0.10 -2.00 5.08 -26.73 -0.14 -2.14 16 5 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 6 C -0.52 -15.12 9.66 -34.44 -0.33 -15.46 16 7 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 8 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 9 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16 10 Si 0.88 22.18 27.47 -169.99 -4.67 17.52 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 14 C 0.10 1.28 0.55 -130.49 -0.07 1.20 16 15 C -0.18 -2.07 7.45 37.15 0.28 -1.79 16 16 C -0.11 -1.34 4.64 -25.03 -0.12 -1.46 16 17 C -0.12 -1.20 6.91 -24.70 -0.17 -1.37 16 18 C -0.12 -1.16 6.83 -25.07 -0.17 -1.33 16 19 C -0.12 -1.24 5.56 -25.61 -0.14 -1.38 16 20 H 0.07 1.10 6.47 -51.93 -0.34 0.76 16 21 H 0.06 0.76 6.01 -51.93 -0.31 0.45 16 22 H 0.02 0.31 6.68 -51.93 -0.35 -0.04 16 23 H 0.07 1.17 6.79 -51.93 -0.35 0.81 16 24 H 0.03 0.49 6.88 -51.93 -0.36 0.13 16 25 H 0.05 1.09 6.55 -51.93 -0.34 0.75 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 28 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 29 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 30 H 0.05 0.64 6.69 -51.92 -0.35 0.30 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.75 6.64 -51.93 -0.34 0.41 16 33 H 0.08 1.08 7.92 -51.93 -0.41 0.66 16 34 H 0.06 0.73 7.84 -51.93 -0.41 0.33 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 40 H 0.08 0.86 6.15 -51.93 -0.32 0.54 16 LS Contribution 297.80 15.07 4.49 4.49 Total: -1.00 -30.50 297.80 -8.16 -38.66 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -7.16 Total: -3.41 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: -0.57 Total: -20.72 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.24 Total: -36.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.50 -8.16 -38.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618779818.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.711 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds