Wall clock time and date at job start Mon Mar 30 2020 03:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46907 * 2 1 4 4 C 1.53002 * 109.47123 * 176.22181 * 3 2 1 5 5 N 1.46901 * 109.47415 * 296.22189 * 3 2 1 6 6 C 1.46900 * 110.99850 * 298.85143 * 5 3 2 7 7 H 1.09003 * 109.46865 * 336.56967 * 6 5 3 8 8 C 1.52991 * 109.47463 * 96.57351 * 6 5 3 9 9 C 1.53002 * 109.46946 * 216.57751 * 6 5 3 10 10 C 1.50697 * 109.47717 * 64.99710 * 9 6 5 11 11 H 1.08001 * 119.99729 * 359.97438 * 10 9 6 12 12 C 1.37871 * 120.00457 * 179.72474 * 10 9 6 13 13 N 1.31516 * 119.99666 * 0.27912 * 12 10 9 14 14 Si 1.86796 * 120.00230 * 180.27505 * 12 10 9 15 15 H 1.48498 * 109.47156 * 60.00268 * 14 12 10 16 16 H 1.48501 * 109.47322 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47180 * 300.00129 * 14 12 10 18 18 C 1.53004 * 109.47346 * 56.22373 * 3 2 1 19 19 C 1.52997 * 117.49959 * 123.74602 * 18 3 2 20 20 C 1.52994 * 117.49965 * 55.08272 * 18 3 2 21 21 H 1.09003 * 109.47602 * 300.00165 * 1 2 3 22 22 H 1.09001 * 109.47105 * 59.99871 * 1 2 3 23 23 H 1.09001 * 109.47341 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46997 * 240.00169 * 2 1 3 25 25 H 1.09000 * 109.46801 * 119.99674 * 2 1 3 26 26 H 1.09002 * 109.47263 * 172.72318 * 4 3 2 27 27 H 1.09003 * 109.47129 * 292.72818 * 4 3 2 28 28 H 1.09001 * 109.47188 * 52.72537 * 4 3 2 29 29 H 1.00901 * 111.00341 * 174.89309 * 5 3 2 30 30 H 1.09002 * 109.47306 * 292.74057 * 8 6 5 31 31 H 1.09002 * 109.47433 * 52.74155 * 8 6 5 32 32 H 1.09002 * 109.47367 * 172.74322 * 8 6 5 33 33 H 1.09005 * 109.46746 * 304.99523 * 9 6 5 34 34 H 1.09001 * 109.47252 * 185.00070 * 9 6 5 35 35 H 0.97002 * 119.99647 * 180.02562 * 13 12 10 36 36 H 1.09003 * 115.54881 * 269.41498 * 18 3 2 37 37 H 1.08997 * 117.50292 * 359.97438 * 19 18 3 38 38 H 1.08999 * 117.49769 * 145.02098 * 19 18 3 39 39 H 1.08999 * 117.49938 * 214.98036 * 20 18 3 40 40 H 1.08997 * 117.49821 * 0.02562 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5670 1.4436 0.0951 5 7 1.6262 2.1082 -1.2424 6 6 2.1941 1.4318 -2.4163 7 1 3.0879 0.8818 -2.1217 8 6 1.1635 0.4591 -2.9927 9 6 2.5619 2.4723 -3.4761 10 6 3.6652 3.3549 -2.9520 11 1 4.0639 3.1905 -1.9619 12 6 4.1691 4.3691 -3.7384 13 7 3.6831 4.5696 -4.9440 14 14 5.5420 5.4582 -3.0917 15 1 6.7296 4.6238 -2.7779 16 1 5.9022 6.4651 -4.1221 17 1 5.0852 6.1521 -1.8608 18 6 1.4539 2.1907 1.1990 19 6 2.4362 2.8470 2.1711 20 6 1.6755 1.5853 2.5865 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.9384 2.4601 -0.0346 27 1 3.8705 1.0677 1.0722 28 1 3.9801 0.8036 -0.6847 29 1 1.8786 3.0850 -1.2307 30 1 0.9976 -0.3549 -2.2869 31 1 0.2250 0.9853 -3.1675 32 1 1.5334 0.0535 -3.9344 33 1 1.6876 3.0813 -3.7060 34 1 2.9000 1.9661 -4.3803 35 1 4.0379 5.2829 -5.4974 36 1 0.5080 2.7013 1.0179 37 1 3.5001 2.7455 1.9568 38 1 2.1365 3.7893 2.6299 39 1 0.8757 1.6981 3.3184 40 1 2.2392 0.6543 2.6452 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691537518.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:11 Heat of formation + Delta-G solvation = -6.369394 kcal Electronic energy + Delta-G solvation = -16833.089159 eV Core-core repulsion = 14454.388328 eV Total energy + Delta-G solvation = -2378.700831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62720 -37.37264 -34.99813 -33.42228 -31.73788 -29.34376 -28.87333 -25.23483 -24.77941 -23.82428 -22.85350 -20.87356 -19.14635 -18.48716 -17.57948 -16.61680 -16.16899 -15.79094 -15.30320 -14.54739 -14.53139 -14.20568 -13.94856 -13.53014 -13.29705 -13.15919 -12.94992 -12.70700 -12.60928 -12.49908 -12.30192 -12.23287 -12.06717 -11.74887 -11.50323 -11.27116 -11.19276 -11.03033 -10.82063 -10.62992 -10.54891 -9.01110 -8.17641 -6.26845 1.37961 1.39525 1.47016 2.39919 3.00092 3.14549 3.45111 3.87006 4.08653 4.21596 4.23692 4.36439 4.44396 4.52580 4.60390 4.69335 4.73327 4.75773 4.85318 4.93489 5.00694 5.04750 5.09129 5.15387 5.24589 5.28564 5.34848 5.37407 5.40167 5.49016 5.54369 5.60107 5.63440 5.74014 5.89534 6.26234 6.59326 6.77045 6.89369 7.41608 8.94006 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026776 B = 0.009076 C = 0.007270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.466790 B = 3084.470299 C = 3850.535823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C 0.144 3.856 4 C -0.175 4.175 5 N -0.667 5.667 6 C 0.096 3.904 7 H 0.038 0.962 8 C -0.136 4.136 9 C 0.024 3.976 10 C -0.527 4.527 11 H 0.063 0.937 12 C 0.003 3.997 13 N -0.932 5.932 14 Si 0.955 3.045 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.267 1.267 18 C -0.142 4.142 19 C -0.197 4.197 20 C -0.155 4.155 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.339 0.661 30 H 0.073 0.927 31 H 0.047 0.953 32 H 0.040 0.960 33 H -0.007 1.007 34 H -0.011 1.011 35 H 0.261 0.739 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.787 -7.715 13.879 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.053 3.947 4 C -0.233 4.233 5 N -0.298 5.298 6 C -0.014 4.014 7 H 0.056 0.944 8 C -0.193 4.193 9 C -0.014 4.014 10 C -0.565 4.565 11 H 0.082 0.918 12 C -0.195 4.195 13 N -0.573 5.573 14 Si 0.780 3.220 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.192 1.192 18 C -0.161 4.161 19 C -0.234 4.234 20 C -0.192 4.192 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.157 0.843 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.011 0.989 34 H 0.007 0.993 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.381 -7.940 13.679 16.412 hybrid contribution 1.759 1.251 -0.407 2.197 sum -2.622 -6.688 13.272 15.092 Atomic orbital electron populations 1.21645 0.94818 1.00768 1.02196 1.21651 0.97300 0.94084 1.01394 1.20460 0.91117 0.94415 0.88724 1.22619 0.98149 1.01068 1.01487 1.60786 1.61755 1.06536 1.00716 1.21414 0.94622 0.94619 0.90702 0.94393 1.22018 0.98825 0.98778 0.99699 1.19235 0.94859 0.93497 0.93791 1.21577 1.19105 1.14501 1.01306 0.91846 1.25870 0.99382 0.99135 0.95102 1.70099 1.44029 1.32813 1.10343 0.85658 0.79638 0.78545 0.78157 1.19614 1.21222 1.19171 1.22147 1.00229 1.03587 0.90139 1.23216 0.98317 0.97605 1.04222 1.22966 1.02953 0.96917 0.96406 0.92511 0.92909 0.92823 0.92529 0.91116 0.93959 0.91049 0.93610 0.84257 0.90819 0.93393 0.94054 0.98865 0.99280 0.93019 0.88174 0.88989 0.88752 0.87606 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.76 71.98 0.63 -2.71 16 2 C -0.11 -2.78 4.13 30.59 0.13 -2.66 16 3 C 0.14 4.31 0.50 3.53 0.00 4.31 16 4 C -0.17 -5.49 6.48 71.98 0.47 -5.02 16 5 N -0.67 -24.75 5.37 -448.30 -2.41 -27.16 16 6 C 0.10 3.94 1.81 44.91 0.08 4.02 16 7 H 0.04 1.59 5.22 -2.39 -0.01 1.58 16 8 C -0.14 -4.82 8.12 71.98 0.58 -4.24 16 9 C 0.02 1.24 4.48 29.85 0.13 1.37 16 10 C -0.53 -29.02 8.11 25.60 0.21 -28.81 16 11 H 0.06 3.33 6.22 -2.91 -0.02 3.31 16 12 C 0.00 0.16 5.46 84.65 0.46 0.63 16 13 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 14 Si 0.95 44.33 29.54 68.60 2.03 46.35 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 16 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 C -0.14 -3.74 4.00 -10.80 -0.04 -3.78 16 19 C -0.20 -4.74 9.53 30.62 0.29 -4.45 16 20 C -0.16 -3.16 9.34 30.62 0.29 -2.88 16 21 H 0.06 1.30 7.06 -2.39 -0.02 1.28 16 22 H 0.05 1.49 6.44 -2.39 -0.02 1.48 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.60 5.15 -2.39 -0.01 1.59 16 25 H 0.07 1.59 7.14 -2.39 -0.02 1.57 16 26 H 0.04 1.50 6.55 -2.39 -0.02 1.48 16 27 H 0.07 1.87 6.62 -2.39 -0.02 1.85 16 28 H 0.04 1.55 6.24 -2.39 -0.01 1.54 16 29 H 0.34 14.36 7.29 -89.69 -0.65 13.71 16 30 H 0.07 2.24 4.62 -2.39 -0.01 2.23 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 1.46 8.13 -2.39 -0.02 1.44 16 33 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.10 2.79 8.14 -2.39 -0.02 2.78 16 37 H 0.09 2.34 5.84 -2.39 -0.01 2.33 16 38 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.10 1.87 7.10 -2.39 -0.02 1.86 16 Total: -1.00 -60.25 295.16 3.50 -56.76 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.36 Total: 24.88 kcal Atomic # 6 Polarization: -47.46 SS G_CDS: 3.23 Total: -44.23 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -2.12 Total: -83.77 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -60.25 3.50 -56.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691537518.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.388 kcal (2) G-P(sol) polarization free energy of solvation -60.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds