Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.53003 * 109.47193 * 275.00046 * 14 13 2 16 16 C 1.53005 * 109.47218 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47171 * 59.99700 * 16 15 14 18 18 C 1.53001 * 109.47146 * 59.99911 * 17 16 15 19 19 C 1.53000 * 109.46990 * 300.00072 * 17 16 15 20 20 C 1.52997 * 109.47198 * 60.00430 * 19 17 16 21 21 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 23 23 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 24 24 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 25 25 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 26 26 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 27 27 H 1.00894 * 110.99680 * 38.95122 * 13 2 1 28 28 H 1.09000 * 109.47676 * 34.99627 * 14 13 2 29 29 H 1.09000 * 109.46824 * 299.99916 * 15 14 13 30 30 H 1.08998 * 109.47395 * 60.00076 * 15 14 13 31 31 H 1.09000 * 109.46897 * 299.99556 * 16 15 14 32 32 H 1.08997 * 109.46982 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.46996 * 179.97438 * 17 16 15 34 34 H 1.09006 * 109.47488 * 300.00216 * 18 17 16 35 35 H 1.09001 * 109.46753 * 59.99714 * 18 17 16 36 36 H 1.08997 * 109.47573 * 179.97438 * 18 17 16 37 37 H 1.08994 * 109.47443 * 299.99906 * 19 17 16 38 38 H 1.09010 * 109.46691 * 180.02562 * 19 17 16 39 39 H 1.09004 * 109.47323 * 180.02562 * 20 19 17 40 40 H 1.08993 * 109.47860 * 59.99545 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 3.4110 0.9810 2.3223 16 6 3.4767 1.9337 3.5178 17 6 3.3714 1.1310 4.8160 18 6 4.5292 0.1338 4.8944 19 6 2.0427 0.3727 4.8405 20 6 1.9772 -0.5800 3.6452 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6055 -0.2619 -2.1370 25 1 1.7517 -1.7715 -1.2055 26 1 6.0246 -1.4984 -3.1541 27 1 1.4495 -1.4978 1.4100 28 1 1.2576 0.9330 2.2906 29 1 4.2359 0.2706 2.3786 30 1 3.4862 1.5525 1.3973 31 1 2.6518 2.6441 3.4619 32 1 4.4234 2.4736 3.5005 33 1 3.4186 1.8097 5.6677 34 1 4.4825 -0.5450 4.0428 35 1 5.4757 0.6741 4.8769 36 1 4.4545 -0.4378 5.8195 37 1 1.2179 1.0830 4.7847 38 1 1.9676 -0.1988 5.7657 39 1 1.0304 -1.1199 3.6623 40 1 2.8020 -1.2904 3.7009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695857969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = -32.670197 kcal Electronic energy + Delta-G solvation = -16457.983458 eV Core-core repulsion = 14078.142138 eV Total energy + Delta-G solvation = -2379.841320 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.14726 -36.21430 -32.73904 -31.49873 -30.53634 -28.47795 -27.60162 -25.74734 -22.82563 -22.38838 -20.95386 -19.48162 -18.30415 -16.52276 -15.75872 -15.04546 -14.53387 -14.35764 -13.85844 -13.75967 -13.07636 -12.89317 -12.47620 -12.29026 -12.15643 -11.94917 -11.79052 -11.63657 -11.39156 -11.21718 -10.86605 -10.74790 -10.67738 -10.23042 -10.00568 -9.96667 -9.67871 -9.61129 -9.47757 -8.96618 -8.36396 -7.51447 -5.85039 -3.78093 3.40187 3.47215 3.50059 4.59572 4.63714 4.86936 4.94584 5.16416 5.38829 5.48397 5.50877 5.53670 5.63410 5.71353 5.76318 5.78984 5.83394 5.89411 5.93307 6.02059 6.08856 6.12556 6.18378 6.29766 6.34717 6.47299 6.51062 6.53279 6.60250 6.74094 6.86153 7.00147 7.24305 7.40211 7.91705 8.00579 8.20735 8.79532 9.27413 9.78592 11.29121 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032723 B = 0.007194 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.458411 B = 3891.360654 C = 4393.218850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.099 3.901 3 H 0.069 0.931 4 C -0.004 4.004 5 C -0.485 4.485 6 H 0.078 0.922 7 C 0.059 3.941 8 N -0.910 5.910 9 Si 0.874 3.126 10 H -0.280 1.280 11 H -0.269 1.269 12 H -0.291 1.291 13 N -0.661 5.661 14 C 0.093 3.907 15 C -0.107 4.107 16 C -0.114 4.114 17 C -0.090 4.090 18 C -0.153 4.153 19 C -0.109 4.109 20 C -0.122 4.122 21 H 0.049 0.951 22 H 0.040 0.960 23 H 0.055 0.945 24 H 0.014 0.986 25 H 0.010 0.990 26 H 0.258 0.742 27 H 0.329 0.671 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 3.400 13.304 15.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.011 4.011 3 H 0.088 0.912 4 C -0.042 4.042 5 C -0.524 4.524 6 H 0.096 0.904 7 C -0.140 4.140 8 N -0.551 5.551 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.218 1.218 13 N -0.290 5.290 14 C -0.017 4.017 15 C -0.145 4.145 16 C -0.152 4.152 17 C -0.109 4.109 18 C -0.210 4.210 19 C -0.147 4.147 20 C -0.160 4.160 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.147 0.853 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.070 3.426 13.018 15.205 hybrid contribution -1.378 -0.472 -0.613 1.580 sum -8.448 2.953 12.405 15.296 Atomic orbital electron populations 1.22599 0.99698 1.01090 1.00770 1.21571 0.89481 0.98323 0.91731 0.91247 1.19609 0.97890 0.95040 0.91657 1.21065 0.89513 1.33438 1.08340 0.90370 1.25014 0.94669 0.96428 0.97875 1.69916 1.06434 1.46561 1.32210 0.86880 0.80345 0.80620 0.81917 1.20660 1.19410 1.21771 1.60499 1.57514 1.08482 1.02550 1.21437 0.96639 0.93884 0.89758 1.21549 0.97971 0.98012 0.97002 1.21590 1.01164 0.97775 0.94689 1.21080 0.95117 0.96982 0.97673 1.21957 0.97583 0.99486 1.01932 1.21508 0.97149 0.98222 0.97839 1.21751 1.01717 0.98323 0.94212 0.93148 0.94101 0.92612 0.96748 0.97157 0.93191 0.85326 0.95148 0.90699 0.91738 0.92730 0.92189 0.92045 0.91130 0.93018 0.93405 0.92514 0.92394 0.92830 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.95 9.15 37.16 0.34 -2.61 16 2 C 0.10 1.95 2.34 -67.71 -0.16 1.79 16 3 H 0.07 1.44 7.11 -51.93 -0.37 1.07 16 4 C 0.00 -0.10 3.72 -27.88 -0.10 -0.21 16 5 C -0.49 -13.93 9.39 -34.44 -0.32 -14.25 16 6 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 7 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 8 N -0.91 -28.74 13.96 55.43 0.77 -27.97 16 9 Si 0.87 22.32 27.47 -169.99 -4.67 17.65 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 N -0.66 -12.22 5.77 -99.74 -0.58 -12.80 16 14 C 0.09 1.45 2.31 -67.71 -0.16 1.29 16 15 C -0.11 -1.77 5.14 -26.73 -0.14 -1.90 16 16 C -0.11 -1.50 5.45 -26.73 -0.15 -1.65 16 17 C -0.09 -1.05 3.19 -90.62 -0.29 -1.34 16 18 C -0.15 -1.83 8.50 37.16 0.32 -1.51 16 19 C -0.11 -1.24 5.45 -26.73 -0.15 -1.38 16 20 C -0.12 -1.60 4.92 -26.73 -0.13 -1.74 16 21 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 22 H 0.04 0.59 7.43 -51.93 -0.39 0.20 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 25 H 0.01 0.25 7.57 -51.93 -0.39 -0.15 16 26 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 27 H 0.33 5.61 8.08 -39.29 -0.32 5.30 16 28 H 0.03 0.48 7.11 -51.93 -0.37 0.11 16 29 H 0.07 1.37 6.43 -51.93 -0.33 1.03 16 30 H 0.06 1.21 7.43 -51.93 -0.39 0.82 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.97 4.81 -51.93 -0.25 0.72 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 40 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -30.39 300.25 -8.30 -38.70 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.32 Total: 1.74 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -1.03 Total: -21.84 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.20 Total: -40.76 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.39 -8.30 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.026 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds