Wall clock time and date at job start Mon Mar 30 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47296 * 2 1 4 4 C 1.52999 * 109.47323 * 239.99809 * 2 1 3 5 5 C 1.50702 * 109.47522 * 175.00325 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46904 * 109.47024 * 119.99953 * 2 1 3 14 14 C 1.46895 * 110.99693 * 275.00073 * 13 2 1 15 15 C 1.53003 * 109.47193 * 275.00046 * 14 13 2 16 16 C 1.53005 * 109.47218 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.47171 * 59.99700 * 16 15 14 18 18 C 1.53001 * 109.47146 * 59.99911 * 17 16 15 19 19 C 1.53000 * 109.46990 * 300.00072 * 17 16 15 20 20 C 1.52997 * 109.47198 * 60.00430 * 19 17 16 21 21 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 22 22 H 1.08994 * 109.47531 * 300.00535 * 1 2 3 23 23 H 1.09007 * 109.46949 * 60.00137 * 1 2 3 24 24 H 1.09000 * 109.47527 * 54.99924 * 4 2 1 25 25 H 1.09001 * 109.47054 * 295.00014 * 4 2 1 26 26 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 27 27 H 1.00894 * 110.99680 * 38.95122 * 13 2 1 28 28 H 1.09000 * 109.47676 * 34.99627 * 14 13 2 29 29 H 1.09000 * 109.46824 * 299.99916 * 15 14 13 30 30 H 1.08998 * 109.47395 * 60.00076 * 15 14 13 31 31 H 1.09000 * 109.46897 * 299.99556 * 16 15 14 32 32 H 1.08997 * 109.46982 * 179.97438 * 16 15 14 33 33 H 1.09001 * 109.46996 * 179.97438 * 17 16 15 34 34 H 1.09006 * 109.47488 * 300.00216 * 18 17 16 35 35 H 1.09001 * 109.46753 * 59.99714 * 18 17 16 36 36 H 1.08997 * 109.47573 * 179.97438 * 18 17 16 37 37 H 1.08994 * 109.47443 * 299.99906 * 19 17 16 38 38 H 1.09010 * 109.46691 * 180.02562 * 19 17 16 39 39 H 1.09004 * 109.47323 * 180.02562 * 20 19 17 40 40 H 1.08993 * 109.47860 * 59.99545 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6150 -1.3127 6 1 4.0789 -0.0856 -0.5395 7 6 4.2304 -1.1928 -2.3582 8 7 5.5406 -1.0953 -2.4165 9 14 3.3015 -2.1079 -3.6958 10 1 3.1767 -3.5394 -3.3210 11 1 1.9480 -1.5171 -3.8514 12 1 4.0414 -1.9947 -4.9784 13 7 2.0197 -0.6925 1.1995 14 6 2.0824 0.2226 2.3468 15 6 3.4110 0.9810 2.3223 16 6 3.4767 1.9337 3.5178 17 6 3.3714 1.1310 4.8160 18 6 4.5292 0.1338 4.8944 19 6 2.0427 0.3727 4.8405 20 6 1.9772 -0.5800 3.6452 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.6055 -0.2619 -2.1370 25 1 1.7517 -1.7715 -1.2055 26 1 6.0246 -1.4984 -3.1541 27 1 1.4495 -1.4978 1.4100 28 1 1.2576 0.9330 2.2906 29 1 4.2359 0.2706 2.3786 30 1 3.4862 1.5525 1.3973 31 1 2.6518 2.6441 3.4619 32 1 4.4234 2.4736 3.5005 33 1 3.4186 1.8097 5.6677 34 1 4.4825 -0.5450 4.0428 35 1 5.4757 0.6741 4.8769 36 1 4.4545 -0.4378 5.8195 37 1 1.2179 1.0830 4.7847 38 1 1.9676 -0.1988 5.7657 39 1 1.0304 -1.1199 3.6623 40 1 2.8020 -1.2904 3.7009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695857969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:29 Heat of formation + Delta-G solvation = -51.669846 kcal Electronic energy + Delta-G solvation = -16458.807344 eV Core-core repulsion = 14078.142138 eV Total energy + Delta-G solvation = -2380.665206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32298 -37.66037 -34.75239 -33.07103 -31.65249 -30.11603 -29.09143 -26.85974 -24.68254 -23.60622 -22.23613 -21.11478 -19.39295 -18.75178 -17.01014 -16.38380 -16.26090 -15.61059 -15.35910 -15.07147 -14.60159 -14.33009 -14.04737 -13.70547 -13.48374 -13.36163 -13.21751 -12.97583 -12.75638 -12.51522 -12.40265 -12.10272 -11.85293 -11.77885 -11.66894 -11.43535 -11.15510 -11.07476 -10.95612 -10.81101 -10.65518 -8.94412 -8.15563 -6.13903 1.37494 1.39082 1.50234 2.43504 3.16879 3.38361 3.81855 3.90244 4.10073 4.19718 4.30338 4.36999 4.46237 4.48315 4.54637 4.58485 4.66656 4.73192 4.87263 4.92421 4.98577 5.03532 5.09633 5.14781 5.17557 5.20658 5.23491 5.30372 5.36120 5.45042 5.46192 5.54425 5.58683 5.70670 5.78908 6.41993 6.57515 6.83544 6.94800 7.46361 9.02039 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032723 B = 0.007194 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.458411 B = 3891.360654 C = 4393.218850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 H 0.049 0.951 4 C -0.003 4.003 5 C -0.487 4.487 6 H 0.034 0.966 7 C -0.007 4.007 8 N -0.961 5.961 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.248 1.248 12 H -0.290 1.290 13 N -0.685 5.685 14 C 0.097 3.903 15 C -0.104 4.104 16 C -0.109 4.109 17 C -0.087 4.087 18 C -0.152 4.152 19 C -0.104 4.104 20 C -0.116 4.116 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.015 0.985 26 H 0.260 0.740 27 H 0.338 0.662 28 H 0.039 0.961 29 H 0.045 0.955 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.044 0.956 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.615 3.094 14.443 18.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.007 4.007 3 H 0.067 0.933 4 C -0.040 4.040 5 C -0.525 4.525 6 H 0.052 0.948 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.171 1.171 12 H -0.216 1.216 13 N -0.316 5.316 14 C -0.012 4.012 15 C -0.142 4.142 16 C -0.147 4.147 17 C -0.105 4.105 18 C -0.209 4.209 19 C -0.142 4.142 20 C -0.154 4.154 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.035 0.965 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.157 0.843 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.823 3.126 14.175 17.527 hybrid contribution -0.424 -0.331 -0.925 1.070 sum -10.247 2.795 13.250 16.981 Atomic orbital electron populations 1.22430 0.96073 1.02270 1.02115 1.21325 0.92228 0.96530 0.90586 0.93277 1.19578 0.94510 0.95817 0.94138 1.21332 0.92153 1.32121 1.06897 0.94769 1.25980 0.95539 0.97767 1.00869 1.70094 1.08516 1.48329 1.33443 0.85708 0.79638 0.79283 0.78194 1.19783 1.17147 1.21580 1.60353 1.58293 1.09613 1.03328 1.21441 0.95859 0.93823 0.90100 1.21484 0.97940 0.97816 0.97003 1.21552 1.01638 0.97346 0.94128 1.21095 0.95263 0.97007 0.97156 1.21937 0.97918 0.99376 1.01661 1.21504 0.97024 0.98106 0.97576 1.21703 1.01979 0.98271 0.93472 0.92000 0.91999 0.92058 0.96464 0.96715 0.93172 0.84320 0.94285 0.93608 0.95495 0.91491 0.92367 0.89683 0.93686 0.93261 0.91634 0.91313 0.90353 0.91221 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.03 9.15 71.98 0.66 -4.37 16 2 C 0.10 4.04 2.34 44.91 0.11 4.15 16 3 H 0.05 2.10 7.11 -2.39 -0.02 2.08 16 4 C 0.00 -0.13 3.72 29.85 0.11 -0.02 16 5 C -0.49 -28.91 9.39 25.60 0.24 -28.67 16 6 H 0.03 2.27 7.99 -2.91 -0.02 2.25 16 7 C -0.01 -0.44 5.47 84.65 0.46 0.02 16 8 N -0.96 -62.93 13.96 21.45 0.30 -62.63 16 9 Si 0.95 46.23 27.47 68.60 1.88 48.12 16 10 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 N -0.68 -25.39 5.77 -469.46 -2.71 -28.10 16 14 C 0.10 3.00 2.31 44.92 0.10 3.10 16 15 C -0.10 -3.60 5.14 30.60 0.16 -3.44 16 16 C -0.11 -2.81 5.45 30.60 0.17 -2.65 16 17 C -0.09 -1.84 3.19 -10.79 -0.03 -1.88 16 18 C -0.15 -3.52 8.50 71.98 0.61 -2.91 16 19 C -0.10 -2.03 5.45 30.59 0.17 -1.86 16 20 C -0.12 -2.85 4.92 30.59 0.15 -2.70 16 21 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 22 H 0.06 1.58 7.43 -2.39 -0.02 1.56 16 23 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 24 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 25 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 26 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 27 H 0.34 11.17 8.08 -89.70 -0.73 10.44 16 28 H 0.04 1.15 7.11 -2.39 -0.02 1.13 16 29 H 0.05 1.81 6.43 -2.39 -0.02 1.80 16 30 H 0.03 1.09 7.43 -2.39 -0.02 1.07 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.27 4.81 -2.38 -0.01 1.26 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.07 1.50 8.12 -2.38 -0.02 1.48 16 40 H 0.06 1.67 6.43 -2.39 -0.02 1.66 16 Total: -1.00 -68.23 300.25 2.58 -65.65 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.20 Total: 18.19 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 2.90 Total: -41.23 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -2.41 Total: -90.73 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.12 kcal Total: -68.23 2.58 -65.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695857969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.980 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds