Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.52999 * 112.85042 * 291.18094 * 3 2 1 5 5 N 1.46901 * 109.46766 * 304.44983 * 4 3 2 6 6 C 1.46905 * 110.99784 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47447 * 324.99743 * 6 5 4 8 8 C 1.53001 * 109.47296 * 85.00091 * 6 5 4 9 9 C 1.53004 * 109.46869 * 204.99944 * 6 5 4 10 10 C 1.50698 * 109.47023 * 64.99926 * 9 6 5 11 11 H 1.07992 * 120.00384 * 359.97438 * 10 9 6 12 12 C 1.37882 * 120.00003 * 179.97438 * 10 9 6 13 13 N 1.31517 * 119.99535 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00094 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47291 * 60.00264 * 14 12 10 16 16 H 1.48502 * 109.46889 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47085 * 299.99820 * 14 12 10 18 18 C 1.53774 * 113.61787 * 159.87030 * 3 2 1 19 19 C 1.53778 * 87.08705 * 220.01770 * 18 3 2 20 20 C 1.53787 * 113.61447 * 62.37117 * 3 2 1 21 21 H 1.08994 * 109.46829 * 176.98921 * 1 2 3 22 22 H 1.08994 * 109.47083 * 296.99582 * 1 2 3 23 23 H 1.09007 * 109.46625 * 56.99018 * 1 2 3 24 24 H 1.09009 * 109.46749 * 119.99761 * 2 1 3 25 25 H 1.08996 * 109.47380 * 239.99484 * 2 1 3 26 26 H 1.08999 * 109.47175 * 64.44478 * 4 3 2 27 27 H 1.08997 * 109.47560 * 184.45207 * 4 3 2 28 28 H 1.00898 * 111.00401 * 303.94740 * 5 4 3 29 29 H 1.08995 * 109.46961 * 179.97438 * 8 6 5 30 30 H 1.08995 * 109.46825 * 300.00016 * 8 6 5 31 31 H 1.09005 * 109.47185 * 59.99917 * 8 6 5 32 32 H 1.09004 * 109.46811 * 184.99885 * 9 6 5 33 33 H 1.09002 * 109.47447 * 305.00012 * 9 6 5 34 34 H 0.97008 * 119.99704 * 179.97438 * 13 12 10 35 35 H 1.09005 * 113.61659 * 334.57039 * 18 3 2 36 36 H 1.09001 * 113.61622 * 105.46862 * 18 3 2 37 37 H 1.08998 * 113.61826 * 270.88970 * 19 18 3 38 38 H 1.09000 * 113.69072 * 139.98869 * 19 18 3 39 39 H 1.08990 * 113.61739 * 254.53036 * 20 3 2 40 40 H 1.08998 * 113.61134 * 25.35387 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.7579 2.1724 -1.3147 5 7 2.3273 1.4069 -2.4317 6 6 2.0756 2.0796 -3.7132 7 1 1.1017 2.5680 -3.6822 8 6 3.1634 3.1263 -3.9621 9 6 2.0928 1.0477 -4.8428 10 6 0.9448 0.0880 -4.6640 11 1 0.2706 0.2023 -3.8282 12 6 0.7551 -0.9360 -5.5676 13 7 1.5765 -1.0755 -6.5853 14 14 -0.6684 -2.1252 -5.3464 15 1 -1.9497 -1.3753 -5.3800 16 1 -0.6516 -3.1267 -6.4427 17 1 -0.5351 -2.8193 -4.0404 18 6 3.4927 1.5823 0.4849 19 6 3.0406 2.8520 1.2253 20 6 1.6294 2.2411 1.2484 21 1 -0.3633 -1.0262 -0.0540 22 1 -0.3633 0.4665 0.9156 23 1 -0.3633 0.5599 -0.8619 24 1 1.8933 -0.5138 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 0.6810 2.2695 -1.4524 27 1 2.2112 3.1632 -1.2848 28 1 3.3142 1.2477 -2.2951 29 1 2.9769 3.6251 -4.9131 30 1 3.1511 3.8614 -3.1574 31 1 4.1374 2.6379 -3.9932 32 1 1.9948 1.5569 -5.8016 33 1 3.0335 0.4975 -4.8181 34 1 1.4433 -1.7962 -7.2208 35 1 3.8104 0.7789 1.1496 36 1 4.2044 1.7750 -0.3179 37 1 3.1143 3.7579 0.6237 38 1 3.4843 2.9635 2.2146 39 1 0.8369 2.9657 1.0620 40 1 1.4363 1.6177 2.1215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695860900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -6.402658 kcal Electronic energy + Delta-G solvation = -16425.026005 eV Core-core repulsion = 14046.323731 eV Total energy + Delta-G solvation = -2378.702274 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.68793 -36.16327 -32.67235 -32.19420 -30.14996 -27.19810 -25.79173 -25.66817 -23.74727 -22.70821 -21.20334 -19.66853 -17.83369 -16.14944 -15.59063 -15.10623 -14.56689 -14.36846 -13.93575 -13.75093 -13.01626 -12.78153 -12.46113 -12.31982 -12.01169 -11.74074 -11.61204 -11.47019 -11.36887 -10.96332 -10.93018 -10.68198 -10.54668 -10.42355 -10.06414 -9.96948 -9.81755 -9.64561 -9.18070 -8.91929 -8.19619 -7.43483 -5.82210 -3.79158 3.44212 3.47805 3.51423 4.57824 4.61450 4.74692 4.82457 4.95170 5.23766 5.40687 5.55328 5.58706 5.70708 5.78436 5.81179 5.83612 5.91531 5.94325 5.96314 5.97868 6.08810 6.11988 6.22261 6.25782 6.39238 6.44621 6.53681 6.59530 6.68880 6.81416 6.92422 7.09942 7.64812 7.76653 8.11035 8.14120 8.26576 8.67157 9.26038 9.81618 11.30046 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.008042 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.431772 B = 3480.778179 C = 4242.130309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.072 4.072 4 C 0.085 3.915 5 N -0.658 5.658 6 C 0.089 3.911 7 H 0.062 0.938 8 C -0.179 4.179 9 C 0.034 3.966 10 C -0.484 4.484 11 H 0.058 0.942 12 C 0.049 3.951 13 N -0.906 5.906 14 Si 0.888 3.112 15 H -0.280 1.280 16 H -0.291 1.291 17 H -0.278 1.278 18 C -0.133 4.133 19 C -0.143 4.143 20 C -0.131 4.131 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.017 0.983 28 H 0.329 0.671 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.015 0.985 33 H 0.016 0.984 34 H 0.257 0.743 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 6.706 14.087 15.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.072 4.072 4 C -0.045 4.045 5 N -0.288 5.288 6 C -0.020 4.020 7 H 0.080 0.920 8 C -0.239 4.239 9 C -0.003 4.003 10 C -0.523 4.523 11 H 0.076 0.924 12 C -0.150 4.150 13 N -0.547 5.547 14 Si 0.717 3.283 15 H -0.206 1.206 16 H -0.217 1.217 17 H -0.204 1.204 18 C -0.171 4.171 19 C -0.180 4.180 20 C -0.169 4.169 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.035 0.965 28 H 0.147 0.853 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.520 6.172 13.870 15.257 hybrid contribution -0.104 0.060 0.102 0.157 sum 1.416 6.232 13.971 15.364 Atomic orbital electron populations 1.21673 0.96299 1.01171 1.01052 1.21340 0.95686 0.94796 1.01987 1.21828 0.95345 0.96155 0.93883 1.21682 0.99979 0.93268 0.89549 1.60499 1.19326 1.48418 1.00525 1.21782 0.95859 0.93642 0.90729 0.91978 1.22555 1.00693 0.99843 1.00760 1.19100 0.97575 0.92750 0.90923 1.21109 1.11269 1.11116 1.08797 0.92391 1.25001 0.96398 0.97940 0.95642 1.69961 1.37706 1.32582 1.14435 0.86727 0.83134 0.81045 0.77433 1.20624 1.21714 1.20362 1.22981 0.96833 0.97576 0.99701 1.22819 0.97333 0.97732 1.00141 1.22954 0.96579 0.99191 0.98206 0.93418 0.94028 0.92075 0.93541 0.89625 0.91261 0.96504 0.85349 0.92610 0.94536 0.93128 0.96648 0.96586 0.93376 0.90385 0.91842 0.90611 0.92114 0.91902 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.60 37.16 0.36 -1.77 16 2 C -0.10 -1.48 5.29 -26.73 -0.14 -1.63 16 3 C -0.07 -0.96 0.65 -153.70 -0.10 -1.07 16 4 C 0.08 1.32 4.51 -3.82 -0.02 1.30 16 5 N -0.66 -12.12 5.14 -106.72 -0.55 -12.67 16 6 C 0.09 1.81 2.53 -67.71 -0.17 1.64 16 7 H 0.06 1.30 7.80 -51.93 -0.41 0.89 16 8 C -0.18 -3.07 9.16 37.16 0.34 -2.73 16 9 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 10 C -0.48 -13.71 8.84 -34.44 -0.30 -14.02 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 13 N -0.91 -27.75 13.29 55.43 0.74 -27.02 16 14 Si 0.89 22.38 29.54 -169.99 -5.02 17.36 16 15 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C -0.13 -1.61 7.08 -25.92 -0.18 -1.80 16 19 C -0.14 -1.55 7.73 -25.92 -0.20 -1.75 16 20 C -0.13 -1.51 6.44 -25.91 -0.17 -1.68 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.04 0.53 7.62 -51.93 -0.40 0.13 16 23 H 0.06 1.00 6.97 -51.92 -0.36 0.64 16 24 H 0.05 0.62 7.99 -51.92 -0.42 0.20 16 25 H 0.09 1.51 7.48 -51.93 -0.39 1.12 16 26 H 0.07 1.15 7.06 -51.93 -0.37 0.79 16 27 H 0.02 0.25 6.61 -51.93 -0.34 -0.09 16 28 H 0.33 5.79 7.76 -39.29 -0.30 5.49 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 31 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.08 0.89 8.00 -51.93 -0.42 0.48 16 36 H 0.06 0.79 7.53 -51.93 -0.39 0.40 16 37 H 0.08 0.83 7.61 -51.93 -0.40 0.43 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -29.42 312.20 -8.43 -37.85 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.49 Total: 1.20 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -0.82 Total: -21.42 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.19 Total: -39.69 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.42 -8.43 -37.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.451 kcal (2) G-P(sol) polarization free energy of solvation -29.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds