Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47370 * 2 1 4 4 C 1.52999 * 112.85042 * 291.18094 * 3 2 1 5 5 N 1.46901 * 109.46766 * 304.44983 * 4 3 2 6 6 C 1.46905 * 110.99784 * 180.02562 * 5 4 3 7 7 H 1.08999 * 109.47447 * 324.99743 * 6 5 4 8 8 C 1.53001 * 109.47296 * 85.00091 * 6 5 4 9 9 C 1.53004 * 109.46869 * 204.99944 * 6 5 4 10 10 C 1.50698 * 109.47023 * 64.99926 * 9 6 5 11 11 H 1.07992 * 120.00384 * 359.97438 * 10 9 6 12 12 C 1.37882 * 120.00003 * 179.97438 * 10 9 6 13 13 N 1.31517 * 119.99535 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00094 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47291 * 60.00264 * 14 12 10 16 16 H 1.48502 * 109.46889 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47085 * 299.99820 * 14 12 10 18 18 C 1.53774 * 113.61787 * 159.87030 * 3 2 1 19 19 C 1.53778 * 87.08705 * 220.01770 * 18 3 2 20 20 C 1.53787 * 113.61447 * 62.37117 * 3 2 1 21 21 H 1.08994 * 109.46829 * 176.98921 * 1 2 3 22 22 H 1.08994 * 109.47083 * 296.99582 * 1 2 3 23 23 H 1.09007 * 109.46625 * 56.99018 * 1 2 3 24 24 H 1.09009 * 109.46749 * 119.99761 * 2 1 3 25 25 H 1.08996 * 109.47380 * 239.99484 * 2 1 3 26 26 H 1.08999 * 109.47175 * 64.44478 * 4 3 2 27 27 H 1.08997 * 109.47560 * 184.45207 * 4 3 2 28 28 H 1.00898 * 111.00401 * 303.94740 * 5 4 3 29 29 H 1.08995 * 109.46961 * 179.97438 * 8 6 5 30 30 H 1.08995 * 109.46825 * 300.00016 * 8 6 5 31 31 H 1.09005 * 109.47185 * 59.99917 * 8 6 5 32 32 H 1.09004 * 109.46811 * 184.99885 * 9 6 5 33 33 H 1.09002 * 109.47447 * 305.00012 * 9 6 5 34 34 H 0.97008 * 119.99704 * 179.97438 * 13 12 10 35 35 H 1.09005 * 113.61659 * 334.57039 * 18 3 2 36 36 H 1.09001 * 113.61622 * 105.46862 * 18 3 2 37 37 H 1.08998 * 113.61826 * 270.88970 * 19 18 3 38 38 H 1.09000 * 113.69072 * 139.98869 * 19 18 3 39 39 H 1.08990 * 113.61739 * 254.53036 * 20 3 2 40 40 H 1.08998 * 113.61134 * 25.35387 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.7579 2.1724 -1.3147 5 7 2.3273 1.4069 -2.4317 6 6 2.0756 2.0796 -3.7132 7 1 1.1017 2.5680 -3.6822 8 6 3.1634 3.1263 -3.9621 9 6 2.0928 1.0477 -4.8428 10 6 0.9448 0.0880 -4.6640 11 1 0.2706 0.2023 -3.8282 12 6 0.7551 -0.9360 -5.5676 13 7 1.5765 -1.0755 -6.5853 14 14 -0.6684 -2.1252 -5.3464 15 1 -1.9497 -1.3753 -5.3800 16 1 -0.6516 -3.1267 -6.4427 17 1 -0.5351 -2.8193 -4.0404 18 6 3.4927 1.5823 0.4849 19 6 3.0406 2.8520 1.2253 20 6 1.6294 2.2411 1.2484 21 1 -0.3633 -1.0262 -0.0540 22 1 -0.3633 0.4665 0.9156 23 1 -0.3633 0.5599 -0.8619 24 1 1.8933 -0.5138 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 0.6810 2.2695 -1.4524 27 1 2.2112 3.1632 -1.2848 28 1 3.3142 1.2477 -2.2951 29 1 2.9769 3.6251 -4.9131 30 1 3.1511 3.8614 -3.1574 31 1 4.1374 2.6379 -3.9932 32 1 1.9948 1.5569 -5.8016 33 1 3.0335 0.4975 -4.8181 34 1 1.4433 -1.7962 -7.2208 35 1 3.8104 0.7789 1.1496 36 1 4.2044 1.7750 -0.3179 37 1 3.1143 3.7579 0.6237 38 1 3.4843 2.9635 2.2146 39 1 0.8369 2.9657 1.0620 40 1 1.4363 1.6177 2.1215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695860900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = -23.021469 kcal Electronic energy + Delta-G solvation = -16425.746650 eV Core-core repulsion = 14046.323731 eV Total energy + Delta-G solvation = -2379.422919 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74653 -37.73415 -34.71772 -33.42787 -31.74261 -29.11396 -26.98712 -26.62842 -25.23145 -24.47289 -22.22347 -21.37550 -18.94980 -18.31484 -16.78307 -16.54549 -16.15339 -15.95432 -15.23437 -14.99177 -14.45296 -14.20531 -14.01851 -13.54216 -13.41762 -13.29705 -13.15714 -12.89221 -12.68183 -12.59680 -12.44702 -12.30654 -11.94851 -11.85825 -11.68295 -11.34310 -11.10373 -10.99560 -10.80807 -10.65960 -10.46391 -8.89418 -8.07841 -6.11872 1.40706 1.43777 1.51010 2.48165 3.23388 3.38200 3.74716 3.85717 3.99191 4.07855 4.24185 4.28224 4.46405 4.51781 4.57984 4.71944 4.74103 4.77175 4.88917 4.92822 4.98148 4.98852 5.11702 5.15799 5.21472 5.22566 5.28174 5.29793 5.39189 5.50653 5.58300 5.67914 5.68848 5.76582 5.92417 6.37979 6.55611 6.79679 7.02013 7.53217 9.04289 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.008042 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.431772 B = 3480.778179 C = 4242.130309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.078 4.078 4 C 0.091 3.909 5 N -0.673 5.673 6 C 0.099 3.901 7 H 0.055 0.945 8 C -0.168 4.168 9 C 0.039 3.961 10 C -0.493 4.493 11 H 0.055 0.945 12 C -0.007 4.007 13 N -0.942 5.942 14 Si 0.953 3.047 15 H -0.271 1.271 16 H -0.287 1.287 17 H -0.272 1.272 18 C -0.133 4.133 19 C -0.134 4.134 20 C -0.124 4.124 21 H 0.042 0.958 22 H 0.064 0.936 23 H 0.037 0.963 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.031 0.969 28 H 0.333 0.667 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.051 0.949 32 H -0.010 1.010 33 H -0.011 1.011 34 H 0.258 0.742 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 7.342 16.309 17.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.136 4.136 3 C -0.079 4.079 4 C -0.038 4.038 5 N -0.303 5.303 6 C -0.010 4.010 7 H 0.073 0.927 8 C -0.227 4.227 9 C 0.002 3.998 10 C -0.532 4.532 11 H 0.074 0.926 12 C -0.202 4.202 13 N -0.584 5.584 14 Si 0.779 3.221 15 H -0.196 1.196 16 H -0.213 1.213 17 H -0.197 1.197 18 C -0.170 4.170 19 C -0.171 4.171 20 C -0.161 4.161 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.151 0.849 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.008 0.992 33 H 0.008 0.992 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.229 6.821 16.109 17.536 hybrid contribution -0.003 -0.146 -0.589 0.607 sum 1.226 6.676 15.519 16.939 Atomic orbital electron populations 1.21645 0.96395 1.00721 1.01154 1.21294 0.95602 0.95664 1.01050 1.21817 0.96986 0.95307 0.93763 1.21644 0.98881 0.93837 0.89457 1.60324 1.19845 1.49459 1.00666 1.21436 0.96861 0.92752 0.89988 0.92716 1.22403 0.99307 0.99284 1.01749 1.18983 0.95397 0.93383 0.92080 1.21433 1.11762 1.11576 1.08413 0.92631 1.25846 0.99101 0.99893 0.95406 1.70094 1.39572 1.33412 1.15360 0.85677 0.80067 0.78805 0.77511 1.19587 1.21273 1.19736 1.23003 0.95493 0.98747 0.99800 1.22778 0.96532 0.96925 1.00858 1.22938 0.97185 0.98905 0.97110 0.93895 0.91666 0.94406 0.91785 0.93186 0.92726 0.95121 0.84870 0.92677 0.91832 0.92950 0.99219 0.99235 0.93357 0.89524 0.92511 0.90569 0.90365 0.91692 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 9.60 71.98 0.69 -3.35 16 2 C -0.10 -2.80 5.29 30.59 0.16 -2.64 16 3 C -0.08 -1.97 0.65 -51.66 -0.03 -2.00 16 4 C 0.09 2.72 4.51 86.30 0.39 3.11 16 5 N -0.67 -24.76 5.14 -491.56 -2.53 -27.29 16 6 C 0.10 4.06 2.53 44.92 0.11 4.17 16 7 H 0.05 2.30 7.80 -2.39 -0.02 2.28 16 8 C -0.17 -5.58 9.16 71.98 0.66 -4.92 16 9 C 0.04 2.08 4.65 29.85 0.14 2.21 16 10 C -0.49 -28.58 8.84 25.60 0.23 -28.36 16 11 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 12 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 13 N -0.94 -59.03 13.29 21.45 0.28 -58.75 16 14 Si 0.95 46.42 29.54 68.60 2.03 48.45 16 15 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 17 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 18 C -0.13 -2.88 7.08 31.12 0.22 -2.66 16 19 C -0.13 -2.44 7.73 31.12 0.24 -2.20 16 20 C -0.12 -2.45 6.44 31.13 0.20 -2.25 16 21 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.06 1.52 7.62 -2.39 -0.02 1.50 16 23 H 0.04 1.23 6.97 -2.38 -0.02 1.21 16 24 H 0.06 1.57 7.99 -2.38 -0.02 1.56 16 25 H 0.05 1.77 7.48 -2.39 -0.02 1.76 16 26 H 0.05 1.79 7.06 -2.39 -0.02 1.77 16 27 H 0.03 0.84 6.61 -2.39 -0.02 0.82 16 28 H 0.33 11.68 7.76 -89.70 -0.70 10.98 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.77 7.45 -2.39 -0.02 1.75 16 31 H 0.05 1.71 8.13 -2.38 -0.02 1.69 16 32 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 35 H 0.09 1.74 8.00 -2.38 -0.02 1.72 16 36 H 0.06 1.31 7.53 -2.39 -0.02 1.29 16 37 H 0.08 1.40 7.61 -2.39 -0.02 1.39 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 40 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 Total: -1.00 -63.91 312.20 3.53 -60.37 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.28 Total: 16.05 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 3.47 Total: -38.83 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -2.24 Total: -86.04 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -63.91 3.53 -60.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.350 kcal (2) G-P(sol) polarization free energy of solvation -63.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds