Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47148 * 2 1 4 4 C 1.50699 * 109.46986 * 239.99751 * 2 1 3 5 5 H 1.08001 * 119.99917 * 245.45986 * 4 2 1 6 6 C 1.37881 * 120.00112 * 65.45909 * 4 2 1 7 7 N 1.31511 * 119.99648 * 9.61655 * 6 4 2 8 8 Si 1.86797 * 119.99893 * 189.62015 * 6 4 2 9 9 H 1.48495 * 109.47592 * 84.99599 * 8 6 4 10 10 H 1.48501 * 109.46860 * 204.99235 * 8 6 4 11 11 H 1.48500 * 109.47355 * 324.98874 * 8 6 4 12 12 N 1.46506 * 109.47193 * 120.00141 * 2 1 3 13 13 C 1.46502 * 120.00073 * 59.99537 * 12 2 1 14 14 C 1.37480 * 119.99826 * 240.00235 * 12 2 1 15 15 N 1.29585 * 119.84400 * 359.97178 * 14 12 2 16 16 C 1.47497 * 119.87149 * 184.43576 * 15 14 12 17 17 C 1.52433 * 109.77533 * 288.99490 * 16 15 14 18 18 C 1.52707 * 110.81823 * 85.45823 * 17 16 15 19 19 C 1.51460 * 112.34423 * 293.09292 * 18 17 16 20 20 N 1.37391 * 119.84436 * 179.97438 * 14 12 2 21 21 H 1.09002 * 109.47338 * 183.29041 * 1 2 3 22 22 H 1.08998 * 109.46937 * 303.28585 * 1 2 3 23 23 H 1.09003 * 109.47377 * 63.28784 * 1 2 3 24 24 H 0.96999 * 119.99830 * 180.02562 * 7 6 4 25 25 H 1.09004 * 109.47100 * 270.00308 * 13 12 2 26 26 H 1.08997 * 109.47056 * 30.00287 * 13 12 2 27 27 H 1.08996 * 109.47197 * 150.00554 * 13 12 2 28 28 H 1.08996 * 109.42154 * 168.89890 * 16 15 14 29 29 H 1.09001 * 109.42026 * 49.08658 * 16 15 14 30 30 H 1.09001 * 109.20989 * 325.11259 * 17 16 15 31 31 H 1.09005 * 109.20743 * 205.80073 * 17 16 15 32 32 H 1.09001 * 108.90492 * 172.35750 * 18 17 16 33 33 H 1.09000 * 108.83629 * 53.78271 * 18 17 16 34 34 H 1.09003 * 109.37741 * 302.01975 * 19 18 17 35 35 H 1.08999 * 109.37831 * 182.36941 * 19 18 17 36 36 H 0.97005 * 120.89293 * 69.27874 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5785 -1.6371 -1.1337 6 6 1.7945 -0.1775 -2.4796 7 7 1.3003 1.0359 -2.5936 8 14 2.1742 -1.1789 -4.0100 9 1 1.0213 -2.0608 -4.3233 10 1 2.4213 -0.2628 -5.1524 11 1 3.3821 -2.0092 -3.7713 12 7 2.0184 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.8087 -0.0225 2.1012 15 7 3.1203 1.2180 1.8928 16 6 4.0470 1.9068 2.8106 17 6 3.3609 2.1494 4.1500 18 6 3.4935 0.9280 5.0569 19 6 2.7270 -0.2670 4.5292 20 7 3.2645 -0.6731 3.2221 21 1 -0.3634 -1.0260 0.0590 22 1 -0.3633 0.5640 0.8591 23 1 -0.3634 0.4619 -0.9180 24 1 1.1326 1.4107 -3.4724 25 1 0.7375 -2.1444 1.9994 26 1 1.5294 -2.5969 0.4709 27 1 2.4628 -2.5819 1.9864 28 1 4.3435 2.8618 2.3770 29 1 4.9318 1.2888 2.9634 30 1 2.3044 2.3565 3.9795 31 1 3.8200 3.0096 4.6375 32 1 3.1153 1.1809 6.0475 33 1 4.5477 0.6633 5.1388 34 1 1.6750 -0.0028 4.4212 35 1 2.8198 -1.0952 5.2317 36 1 3.9263 -1.3790 3.1538 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697734279.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = 21.629761 kcal Electronic energy + Delta-G solvation = -16357.780745 eV Core-core repulsion = 13876.753705 eV Total energy + Delta-G solvation = -2481.027040 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 225.154 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22555 -37.68444 -34.99766 -34.03555 -33.29988 -30.85392 -28.38797 -27.16250 -26.74581 -24.79737 -22.44440 -21.51827 -19.57655 -18.45244 -18.11485 -17.28338 -16.52982 -16.04349 -15.36079 -15.16351 -14.74301 -14.51924 -14.21369 -13.87645 -13.56739 -13.22631 -12.97601 -12.83053 -12.74237 -12.65239 -12.47869 -12.19399 -11.97726 -11.75133 -11.52582 -11.32083 -10.82550 -10.44507 -9.95016 -9.12393 -8.38141 -7.99852 -6.18292 1.43482 1.43930 1.53218 1.92659 2.29170 2.51082 3.16859 3.21025 3.89917 4.15919 4.29247 4.36262 4.53988 4.70856 4.76876 4.80943 4.82420 4.87656 4.96765 4.99492 5.06535 5.10848 5.16010 5.19853 5.31538 5.43962 5.61158 5.65540 5.91570 6.20654 6.28974 6.47495 6.83626 6.96339 7.27949 7.49677 7.98095 8.98774 Molecular weight = 225.15amu Principal moments of inertia in cm(-1) A = 0.040379 B = 0.007616 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.256730 B = 3675.438412 C = 3888.509816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.281 3.719 3 H 0.034 0.966 4 C -0.535 4.535 5 H 0.054 0.946 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.288 1.288 11 H -0.272 1.272 12 N -0.605 5.605 13 C 0.110 3.890 14 C 0.616 3.384 15 N -0.675 5.675 16 C 0.081 3.919 17 C -0.124 4.124 18 C -0.135 4.135 19 C 0.144 3.856 20 N -0.801 5.801 21 H 0.042 0.958 22 H 0.019 0.981 23 H 0.046 0.954 24 H 0.261 0.739 25 H 0.043 0.957 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.041 0.959 35 H 0.105 0.895 36 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -4.979 14.407 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.177 3.823 3 H 0.052 0.948 4 C -0.574 4.574 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.326 5.326 13 C -0.034 4.034 14 C 0.253 3.747 15 N -0.413 5.413 16 C -0.050 4.050 17 C -0.163 4.163 18 C -0.174 4.174 19 C 0.019 3.981 20 N -0.456 5.456 21 H 0.061 0.939 22 H 0.038 0.962 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.123 0.877 36 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.513 -4.094 13.727 14.543 hybrid contribution 0.575 -0.713 -0.633 1.113 sum 3.088 -4.807 13.095 14.287 Atomic orbital electron populations 1.21818 0.98651 0.99051 0.98839 1.18390 0.90045 0.93168 0.80655 0.94775 1.21657 1.35729 1.08220 0.91798 0.92758 1.25674 0.95387 0.95459 1.01795 1.70118 1.46020 1.15215 1.24348 0.85610 0.78670 0.78586 0.78955 1.19478 1.21342 1.19699 1.46911 1.51499 1.11565 1.22597 1.21355 0.99624 0.81434 1.00970 1.18858 0.86549 0.86852 0.82445 1.72672 1.25885 1.09780 1.32979 1.21699 0.94064 0.97440 0.91752 1.21643 0.99865 0.99303 0.95466 1.21735 1.01734 0.94871 0.99030 1.21003 0.95959 0.97529 0.83594 1.44687 1.51087 1.46658 1.03177 0.93887 0.96236 0.93473 0.92955 0.93818 0.92270 0.90843 0.92744 0.94249 0.94319 0.90423 0.89363 0.91246 0.94076 0.87708 0.76211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.17 9.12 71.98 0.66 -5.51 16 2 C 0.28 14.84 2.52 44.24 0.11 14.95 16 3 H 0.03 2.13 6.74 -2.39 -0.02 2.11 16 4 C -0.54 -29.88 8.01 25.60 0.20 -29.68 16 5 H 0.05 2.98 7.16 -2.91 -0.02 2.95 16 6 C 0.02 0.92 5.17 84.66 0.44 1.35 16 7 N -0.92 -54.87 12.16 21.45 0.26 -54.61 16 8 Si 0.96 44.20 29.55 68.60 2.03 46.23 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 N -0.61 -26.35 2.83 -714.68 -2.02 -28.37 16 13 C 0.11 3.79 9.37 127.77 1.20 4.99 16 14 C 0.62 24.96 7.40 260.91 1.93 26.89 16 15 N -0.68 -30.59 9.12 -348.74 -3.18 -33.77 16 16 C 0.08 2.92 6.38 86.00 0.55 3.47 16 17 C -0.12 -3.49 5.74 30.31 0.17 -3.32 16 18 C -0.13 -2.84 5.64 29.99 0.17 -2.67 16 19 C 0.14 3.26 6.57 85.77 0.56 3.82 16 20 N -0.80 -23.13 3.85 -351.36 -1.35 -24.49 16 21 H 0.04 1.93 7.56 -2.39 -0.02 1.91 16 22 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.05 2.55 6.84 -2.39 -0.02 2.53 16 24 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.06 2.19 6.92 -2.39 -0.02 2.17 16 27 H 0.07 2.07 7.14 -2.39 -0.02 2.06 16 28 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.34 7.69 -2.39 -0.02 1.32 16 30 H 0.04 1.26 8.08 -2.39 -0.02 1.24 16 31 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.36 8.01 -2.39 -0.02 1.34 16 34 H 0.04 1.09 8.05 -2.39 -0.02 1.07 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.40 10.03 8.66 -92.70 -0.80 9.22 16 Total: -1.00 -66.94 284.76 1.98 -64.96 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.25 Total: 15.75 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 5.99 Total: 14.29 kcal Atomic # 7 Polarization: -134.95 SS G_CDS: -6.29 Total: -141.24 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -66.94 1.98 -64.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697734279.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.595 kcal (2) G-P(sol) polarization free energy of solvation -66.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds