Wall clock time and date at job start Mon Mar 30 2020 03:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 115.56228 * 2 1 4 4 C 1.53000 * 117.49642 * 214.30968 * 2 1 3 5 5 C 1.52997 * 60.00171 * 252.51315 * 4 2 1 6 6 C 1.52990 * 117.52113 * 107.48163 * 5 4 2 7 7 N 1.46903 * 117.49948 * 252.51598 * 5 4 2 8 8 C 1.46898 * 110.99673 * 248.62121 * 7 5 4 9 9 C 1.53006 * 109.47006 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47131 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47188 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00218 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00046 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99944 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00270 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46778 * 60.00425 * 16 14 12 18 18 H 1.48496 * 109.47592 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47134 * 300.00732 * 16 14 12 20 20 H 1.08999 * 109.46915 * 274.31285 * 1 2 3 21 21 H 1.08999 * 109.47200 * 34.30680 * 1 2 3 22 22 H 1.09000 * 109.47220 * 154.30894 * 1 2 3 23 23 H 1.08994 * 109.47234 * 205.69109 * 3 2 1 24 24 H 1.09004 * 109.47036 * 325.69098 * 3 2 1 25 25 H 1.08995 * 109.47262 * 85.68912 * 3 2 1 26 26 H 1.09003 * 117.49450 * 145.01833 * 4 2 1 27 27 H 1.09004 * 117.49772 * 0.02562 * 4 2 1 28 28 H 1.09001 * 109.47605 * 231.28746 * 6 5 4 29 29 H 1.08999 * 109.47224 * 351.28361 * 6 5 4 30 30 H 1.09003 * 109.47495 * 111.28259 * 6 5 4 31 31 H 1.00895 * 111.00497 * 124.66043 * 7 5 4 32 32 H 1.09001 * 109.47062 * 59.99745 * 8 7 5 33 33 H 1.08993 * 109.47084 * 299.99192 * 8 7 5 34 34 H 1.09001 * 109.46801 * 300.00064 * 9 8 7 35 35 H 1.09001 * 109.46998 * 59.99660 * 9 8 7 36 36 H 1.08996 * 109.46952 * 300.00302 * 10 9 8 37 37 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 38 38 H 1.09000 * 109.47380 * 300.00763 * 11 10 9 39 39 H 1.09001 * 109.46997 * 60.00426 * 11 10 9 40 40 H 0.97007 * 119.99867 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7650 5 6 2.2364 -1.1211 0.7650 6 6 1.3589 -2.1558 1.4719 7 7 3.4967 -0.7897 1.4433 8 6 4.0497 -1.9648 2.1298 9 6 5.3591 -1.5815 2.8223 10 6 5.9348 -2.8052 3.5378 11 6 7.2445 -2.4221 4.2297 12 6 7.8112 -3.6273 4.9350 13 1 7.2897 -4.5721 4.8935 14 6 8.9961 -3.5240 5.6324 15 7 9.6315 -2.3735 5.6826 16 14 9.6990 -5.0180 6.5061 17 1 9.9583 -6.0939 5.5159 18 1 10.9701 -4.6462 7.1778 19 1 8.7272 -5.5016 7.5195 20 1 -0.3633 0.0773 1.0248 21 1 -0.3633 0.8489 -0.5792 22 1 -0.3633 -0.9261 -0.4455 23 1 3.1824 1.3084 -0.4455 24 1 1.5812 2.0742 -0.5793 25 1 2.2773 1.7413 1.0247 26 1 3.1715 -0.8752 -1.2683 27 1 1.6111 -1.8583 -1.2686 28 1 0.7309 -1.6565 2.2098 29 1 0.7281 -2.6588 0.7389 30 1 1.9922 -2.8896 1.9706 31 1 3.3707 -0.0218 2.0855 32 1 4.2411 -2.7538 1.4024 33 1 3.3361 -2.3208 2.8727 34 1 6.0726 -1.2257 2.0790 35 1 5.1681 -0.7923 3.5495 36 1 5.2212 -3.1606 4.2810 37 1 6.1258 -3.5946 2.8108 38 1 7.9579 -2.0669 3.4862 39 1 7.0539 -1.6326 4.9566 40 1 10.4649 -2.3008 6.1736 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702004829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:50 Heat of formation + Delta-G solvation = -8.413921 kcal Electronic energy + Delta-G solvation = -15350.763881 eV Core-core repulsion = 12971.974392 eV Total energy + Delta-G solvation = -2378.789489 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41019 -35.71477 -33.53751 -31.80873 -29.84218 -28.41437 -27.54362 -26.81167 -24.31462 -21.65138 -20.25535 -20.04180 -18.31368 -16.22473 -15.68490 -15.38256 -14.92746 -14.43725 -14.18056 -13.74317 -13.30947 -13.11801 -12.87197 -12.41537 -12.29297 -12.27226 -12.03893 -11.74286 -11.58640 -11.30287 -11.25398 -10.94470 -10.54365 -10.51651 -10.38527 -9.99473 -9.60071 -9.49730 -9.20831 -8.97192 -8.30853 -8.27839 -5.95272 -3.97528 3.35819 3.39899 3.42534 3.57394 4.03962 4.49688 4.58409 4.65700 4.94056 4.96529 5.27311 5.38718 5.40349 5.46887 5.56922 5.60246 5.62543 5.70860 5.75164 5.79128 5.84046 5.89709 5.95885 6.02479 6.09951 6.22262 6.28109 6.35152 6.55293 6.86413 7.00574 7.13061 7.29437 7.46393 7.73613 7.90068 8.05969 8.48764 9.09832 9.66111 11.16063 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.064241 B = 0.003838 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.753847 B = 7292.982133 C = 7537.724827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.155 4.155 5 C 0.044 3.956 6 C -0.146 4.146 7 N -0.652 5.652 8 C 0.059 3.941 9 C -0.116 4.116 10 C -0.108 4.108 11 C 0.021 3.979 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.340 0.660 32 H 0.069 0.931 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.726 4.671 -10.941 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.125 4.125 3 C -0.165 4.165 4 C -0.193 4.193 5 C -0.049 4.049 6 C -0.204 4.204 7 N -0.282 5.282 8 C -0.069 4.069 9 C -0.154 4.154 10 C -0.146 4.146 11 C -0.016 4.016 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.116 0.884 27 H 0.107 0.893 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.163 4.675 -11.418 21.138 hybrid contribution -0.074 -0.907 1.290 1.579 sum -17.238 3.768 -10.127 20.344 Atomic orbital electron populations 1.21347 0.92384 1.01721 1.01625 1.21759 0.94144 0.91827 1.04779 1.21210 1.00362 0.93335 1.01633 1.23417 1.01973 1.00222 0.93667 1.21614 0.91359 0.98644 0.93241 1.21829 0.99331 0.98651 1.00639 1.60392 1.23804 1.08965 1.35035 1.22140 0.96010 0.92462 0.96293 1.21648 0.95264 0.99483 0.98989 1.21581 0.99286 0.95535 0.98245 1.19086 0.90794 0.96586 0.95112 1.21260 1.06617 0.96431 1.31597 0.92831 1.25035 0.97020 0.95851 0.96624 1.69964 1.16990 1.24134 1.42507 0.86669 0.78303 0.83218 0.79861 1.20253 1.21303 1.20291 0.92448 0.92242 0.92561 0.91685 0.92733 0.92555 0.88354 0.89263 0.92431 0.92114 0.91034 0.84111 0.91250 0.94949 0.91727 0.92818 0.93707 0.93462 0.96616 0.96756 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 8.88 37.16 0.33 -0.60 16 2 C -0.12 -1.23 2.70 -154.51 -0.42 -1.65 16 3 C -0.11 -1.03 9.16 37.15 0.34 -0.69 16 4 C -0.15 -1.66 9.39 -26.73 -0.25 -1.91 16 5 C 0.04 0.50 2.77 -131.61 -0.36 0.13 16 6 C -0.15 -1.53 8.50 37.15 0.32 -1.22 16 7 N -0.65 -8.55 6.17 -99.97 -0.62 -9.17 16 8 C 0.06 0.87 4.70 -3.82 -0.02 0.85 16 9 C -0.12 -2.03 5.47 -26.73 -0.15 -2.18 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 16 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H 0.06 0.46 8.02 -51.93 -0.42 0.05 16 21 H 0.06 0.43 7.92 -51.93 -0.41 0.02 16 22 H 0.06 0.43 7.77 -51.93 -0.40 0.03 16 23 H 0.06 0.68 7.90 -51.93 -0.41 0.27 16 24 H 0.05 0.45 7.92 -51.93 -0.41 0.04 16 25 H 0.06 0.53 7.93 -51.93 -0.41 0.12 16 26 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 27 H 0.09 0.85 7.96 -51.93 -0.41 0.44 16 28 H 0.06 0.57 8.02 -51.93 -0.42 0.15 16 29 H 0.06 0.57 7.77 -51.93 -0.40 0.16 16 30 H 0.07 0.82 5.61 -51.93 -0.29 0.53 16 31 H 0.34 4.27 8.38 -39.29 -0.33 3.94 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.46 6.35 -51.93 -0.33 0.13 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -30.18 319.25 -8.56 -38.74 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.57 Total: -1.37 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -0.90 Total: -23.22 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.12 Total: -35.99 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.18 -8.56 -38.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702004829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.323 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds