Wall clock time and date at job start Mon Mar 30 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 115.55855 * 2 1 4 4 C 1.53067 * 117.51926 * 214.29695 * 2 1 3 5 5 C 1.52996 * 59.98570 * 252.52092 * 4 2 1 6 6 C 1.52999 * 117.49923 * 252.49727 * 5 4 2 7 7 N 1.46906 * 117.49885 * 107.49759 * 5 4 2 8 8 C 1.46901 * 110.99793 * 111.25645 * 7 5 4 9 9 C 1.53000 * 109.46769 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08009 * 120.00339 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00310 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99776 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00473 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47245 * 89.99913 * 16 14 12 18 18 H 1.48508 * 109.47285 * 210.00131 * 16 14 12 19 19 H 1.48499 * 109.47170 * 330.00074 * 16 14 12 20 20 H 1.08995 * 109.47302 * 274.31189 * 1 2 3 21 21 H 1.08998 * 109.47338 * 34.31575 * 1 2 3 22 22 H 1.09001 * 109.46912 * 154.31183 * 1 2 3 23 23 H 1.09000 * 109.47419 * 205.68843 * 3 2 1 24 24 H 1.09003 * 109.47434 * 325.68845 * 3 2 1 25 25 H 1.09007 * 109.47550 * 85.68702 * 3 2 1 26 26 H 1.08999 * 117.49675 * 145.03268 * 4 2 1 27 27 H 1.09006 * 117.52973 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.47016 * 248.74304 * 6 5 4 29 29 H 1.08995 * 109.46915 * 8.74243 * 6 5 4 30 30 H 1.09003 * 109.47207 * 128.74397 * 6 5 4 31 31 H 1.00899 * 110.99995 * 347.30043 * 7 5 4 32 32 H 1.09002 * 109.47401 * 59.99808 * 8 7 5 33 33 H 1.09001 * 109.46874 * 299.99821 * 8 7 5 34 34 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 35 35 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 36 36 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 37 37 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 38 38 H 1.08992 * 109.47098 * 299.99158 * 11 10 9 39 39 H 1.09001 * 109.47583 * 60.00267 * 11 10 9 40 40 H 0.96998 * 120.00187 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 6 2.2372 -1.1215 -0.7649 5 6 2.2365 -1.1209 0.7650 6 6 3.5487 -0.7756 1.4720 7 7 1.3938 -2.1149 1.4433 8 6 2.2153 -3.1219 2.1282 9 6 1.3046 -4.1378 2.8206 10 6 2.1601 -5.1863 3.5345 11 6 1.2493 -6.2025 4.2264 12 6 2.0920 -7.2356 4.9290 13 1 3.1695 -7.1734 4.8866 14 6 1.4877 -8.2597 5.6268 15 7 0.1757 -8.3346 5.6797 16 14 2.5322 -9.5399 6.4983 17 1 2.8096 -9.0910 7.8864 18 1 1.8035 -10.8334 6.5326 19 1 3.8139 -9.7131 5.7687 20 1 -0.3634 0.0773 1.0247 21 1 -0.3634 0.8488 -0.5793 22 1 -0.3633 -0.9261 -0.4455 23 1 3.1823 1.3085 -0.4455 24 1 1.5811 2.0743 -0.5793 25 1 2.2771 1.7415 1.0248 26 1 3.1724 -0.8755 -1.2679 27 1 1.6127 -1.8598 -1.2680 28 1 3.9372 -1.6635 1.9707 29 1 4.2746 -0.4237 0.7390 30 1 3.3691 0.0063 2.2099 31 1 0.7545 -2.5497 0.7950 32 1 2.8456 -2.6328 2.8709 33 1 2.8434 -3.6349 1.3998 34 1 0.6761 -3.6251 3.5490 35 1 0.6747 -4.6268 2.0777 36 1 2.7888 -5.6990 2.8065 37 1 2.7897 -4.6969 4.2776 38 1 0.6204 -5.6901 4.9543 39 1 0.6201 -6.6919 3.4830 40 1 -0.2495 -9.0553 6.1703 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702004833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:52 Heat of formation + Delta-G solvation = -25.559854 kcal Electronic energy + Delta-G solvation = -15352.589548 eV Core-core repulsion = 12973.056556 eV Total energy + Delta-G solvation = -2379.532992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36413 -37.13974 -35.29452 -33.51926 -30.89005 -29.73474 -28.64703 -27.68079 -26.06739 -23.13935 -21.78304 -21.37311 -19.05606 -18.41748 -16.96011 -16.56176 -16.39011 -16.04371 -15.01376 -14.75457 -14.52621 -14.40688 -13.98894 -13.77067 -13.52767 -13.21008 -13.09259 -13.00304 -12.89721 -12.73730 -12.60603 -12.35760 -12.27017 -11.97310 -11.90337 -11.45759 -11.30206 -11.13432 -11.04332 -10.55542 -10.37541 -9.05538 -8.19944 -6.31612 1.39547 1.41446 1.52566 2.40908 2.71003 3.12703 3.16159 3.73702 3.85738 3.88462 4.13721 4.23187 4.25632 4.41840 4.58779 4.66578 4.73757 4.81875 4.84373 4.87429 4.90461 4.92619 4.95554 5.07121 5.09838 5.17632 5.21016 5.25195 5.28837 5.34545 5.36819 5.50930 5.54813 5.77447 5.86587 6.15455 6.25582 6.42246 6.85940 7.37755 8.92026 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.064205 B = 0.003839 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.999620 B = 7292.458126 C = 7538.254709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.117 4.117 3 C -0.110 4.110 4 C -0.206 4.206 5 C 0.046 3.954 6 C -0.119 4.119 7 N -0.658 5.658 8 C 0.071 3.929 9 C -0.106 4.106 10 C -0.096 4.096 11 C 0.023 3.977 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.262 1.262 20 H 0.054 0.946 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.342 0.658 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.052 0.948 38 H -0.011 1.011 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.123 17.669 -12.564 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C -0.167 4.167 4 C -0.246 4.246 5 C -0.047 4.047 6 C -0.176 4.176 7 N -0.287 5.287 8 C -0.057 4.057 9 C -0.144 4.144 10 C -0.134 4.134 11 C -0.015 4.015 12 C -0.583 4.583 13 H 0.079 0.921 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.207 1.207 19 H -0.186 1.186 20 H 0.073 0.927 21 H 0.086 0.914 22 H 0.070 0.930 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.120 0.880 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.161 0.839 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.896 17.942 -11.912 22.086 hybrid contribution 0.235 -1.515 -0.193 1.546 sum 5.131 16.426 -12.105 21.040 Atomic orbital electron populations 1.21234 0.91918 1.01710 1.01748 1.21924 0.95268 0.91798 1.02785 1.21331 1.00190 0.93144 1.02079 1.24027 1.03023 1.02166 0.95349 1.21872 0.95326 0.97194 0.90271 1.21476 0.93450 1.02086 1.00615 1.60221 1.18753 1.16488 1.33202 1.21916 0.94981 0.91576 0.97238 1.21473 0.98124 0.95685 0.99105 1.21388 0.97887 0.95780 0.98356 1.19024 0.94707 0.93577 0.94148 1.21750 0.93680 1.10792 1.32084 0.92147 1.26036 0.96259 1.00446 0.97357 1.70109 1.10362 1.33723 1.43328 0.85418 0.78752 0.77808 0.78893 1.19688 1.20685 1.18642 0.92689 0.91443 0.93050 0.91825 0.91331 0.92218 0.87976 0.89330 0.91933 0.90602 0.91651 0.83851 0.90397 0.95020 0.92675 0.93034 0.93133 0.92970 0.99271 0.99258 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.16 71.98 0.66 -1.34 16 2 C -0.12 -2.15 2.70 -52.16 -0.14 -2.29 16 3 C -0.11 -1.62 8.88 71.98 0.64 -0.98 16 4 C -0.21 -3.82 9.17 30.62 0.28 -3.54 16 5 C 0.05 0.97 2.89 3.52 0.01 0.98 16 6 C -0.12 -2.30 8.51 71.98 0.61 -1.69 16 7 N -0.66 -16.70 6.24 -470.17 -2.93 -19.64 16 8 C 0.07 2.01 4.70 86.30 0.41 2.42 16 9 C -0.11 -3.70 5.47 30.59 0.17 -3.53 16 10 C -0.10 -4.05 5.15 30.59 0.16 -3.89 16 11 C 0.02 1.23 4.97 29.85 0.15 1.38 16 12 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 13 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 15 N -0.93 -58.31 13.29 21.45 0.28 -58.03 16 16 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 20 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 21 H 0.07 1.03 7.92 -2.39 -0.02 1.01 16 22 H 0.05 0.95 7.69 -2.39 -0.02 0.93 16 23 H 0.06 0.83 7.77 -2.39 -0.02 0.81 16 24 H 0.07 0.87 7.92 -2.39 -0.02 0.85 16 25 H 0.06 0.90 8.02 -2.38 -0.02 0.88 16 26 H 0.10 1.67 7.96 -2.39 -0.02 1.65 16 27 H 0.09 1.67 8.00 -2.38 -0.02 1.65 16 28 H 0.06 1.31 5.61 -2.39 -0.01 1.29 16 29 H 0.08 1.19 7.77 -2.39 -0.02 1.17 16 30 H 0.06 1.24 8.02 -2.39 -0.02 1.22 16 31 H 0.34 8.40 8.08 -89.69 -0.72 7.68 16 32 H 0.08 2.17 6.35 -2.39 -0.02 2.15 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -64.44 318.86 3.26 -61.18 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.25 Total: 13.40 kcal Atomic # 6 Polarization: -47.59 SS G_CDS: 3.64 Total: -43.95 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.65 Total: -77.66 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.44 3.26 -61.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702004833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.620 kcal (2) G-P(sol) polarization free energy of solvation -64.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds