Wall clock time and date at job start Mon Mar 30 2020 03:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00003 * 2 1 4 4 C 1.53007 * 109.47126 * 66.04068 * 3 2 1 5 5 C 1.52999 * 109.46949 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47001 * 180.02562 * 5 4 3 7 7 H 1.07996 * 119.99717 * 359.72437 * 6 5 4 8 8 C 1.37881 * 119.99729 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99954 * 359.72418 * 8 6 5 10 10 Si 1.86803 * 119.99408 * 179.72778 * 8 6 5 11 11 H 1.48495 * 109.47522 * 59.99849 * 10 8 6 12 12 H 1.48501 * 109.46773 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46845 * 299.99274 * 10 8 6 14 14 C 1.46893 * 111.00336 * 236.04514 * 2 1 3 15 15 H 1.09003 * 112.85328 * 62.78003 * 14 2 1 16 16 C 1.53780 * 113.61599 * 193.98142 * 14 2 1 17 17 C 1.53958 * 87.01968 * 139.95320 * 16 14 2 18 18 C 1.53779 * 87.11160 * 334.63490 * 17 16 14 19 19 C 1.53001 * 113.62002 * 270.81751 * 18 17 16 20 20 C 1.53002 * 113.61305 * 139.90981 * 18 17 16 21 21 H 1.09008 * 109.47038 * 54.08497 * 1 2 3 22 22 H 1.09000 * 109.46996 * 174.08293 * 1 2 3 23 23 H 1.08997 * 109.47324 * 294.08476 * 1 2 3 24 24 H 1.09004 * 109.47039 * 306.04516 * 3 2 1 25 25 H 1.08997 * 109.47556 * 186.04581 * 3 2 1 26 26 H 1.09004 * 109.46795 * 60.00299 * 4 3 2 27 27 H 1.08993 * 109.47162 * 299.99920 * 4 3 2 28 28 H 1.09004 * 109.47081 * 60.00532 * 5 4 3 29 29 H 1.08997 * 109.47692 * 300.00488 * 5 4 3 30 30 H 0.97009 * 119.99513 * 180.02562 * 9 8 6 31 31 H 1.08996 * 113.61578 * 254.52833 * 16 14 2 32 32 H 1.09000 * 113.61168 * 25.43249 * 16 14 2 33 33 H 1.09007 * 113.66673 * 220.06937 * 17 16 14 34 34 H 1.08997 * 113.61456 * 89.20305 * 17 16 14 35 35 H 1.08992 * 109.47506 * 163.37350 * 19 18 17 36 36 H 1.09005 * 109.46447 * 283.37485 * 19 18 17 37 37 H 1.09000 * 109.47164 * 43.36714 * 19 18 17 38 38 H 1.08995 * 109.46946 * 322.50439 * 20 18 17 39 39 H 1.09000 * 109.47237 * 82.50644 * 20 18 17 40 40 H 1.09003 * 109.46905 * 202.50446 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1802 3.4856 1.3185 6 6 1.8221 4.1612 2.6171 7 1 1.2555 3.6269 3.3654 8 6 2.2125 5.4634 2.8474 9 7 2.9020 6.1140 1.9359 10 14 1.7621 6.3032 4.4540 11 1 2.3484 5.5468 5.5894 12 1 2.2959 7.6889 4.4548 13 1 0.2843 6.3415 4.5951 14 6 1.9955 -0.7659 -1.1375 15 1 1.7183 -0.3377 -2.1008 16 6 3.4927 -1.0958 -1.0179 17 6 3.1511 -2.4822 -1.5938 18 6 1.7323 -2.2778 -1.0369 19 6 1.5600 -2.7755 0.3996 20 6 0.6288 -2.7715 -1.9746 21 1 -0.3633 0.6029 -0.8324 22 1 -0.3633 -1.0222 -0.1059 23 1 -0.3634 0.4194 0.9382 24 1 1.5611 1.9273 -0.8310 25 1 3.0797 1.3445 -0.1082 26 1 2.0657 1.5016 2.1492 27 1 0.5471 2.0845 1.4264 28 1 1.7462 4.0418 0.4875 29 1 3.2645 3.4583 1.2105 30 1 3.1770 7.0301 2.0981 31 1 4.1258 -0.4949 -1.6707 32 1 3.8522 -1.1268 0.0107 33 1 3.6933 -3.2994 -1.1180 34 1 3.1910 -2.5248 -2.6822 35 1 0.6540 -2.3459 0.8268 36 1 1.4820 -3.8628 0.4004 37 1 2.4214 -2.4726 0.9949 38 1 0.9065 -2.5577 -3.0067 39 1 0.4988 -3.8464 -1.8486 40 1 -0.3051 -2.2622 -1.7366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703770033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:15 Heat of formation + Delta-G solvation = -0.432201 kcal Electronic energy + Delta-G solvation = -16014.477212 eV Core-core repulsion = 13636.033837 eV Total energy + Delta-G solvation = -2378.443375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.05083 -35.99926 -33.32717 -31.05510 -30.80311 -27.40531 -26.83566 -25.99550 -23.65613 -22.54590 -21.23005 -19.75349 -18.02329 -16.28975 -15.76817 -15.05110 -14.80913 -14.62999 -14.37894 -13.47068 -13.27596 -13.14253 -12.75440 -12.23477 -12.14239 -11.98923 -11.72317 -11.61861 -11.43967 -11.16934 -10.95191 -10.76804 -10.64576 -10.51910 -10.48014 -10.00164 -9.90761 -9.53836 -9.23316 -8.98745 -8.29608 -7.96547 -5.95136 -3.96973 3.36604 3.40489 3.43396 4.25272 4.50449 4.51335 4.58654 4.88690 4.91709 5.24349 5.40506 5.43813 5.51728 5.58001 5.67330 5.70522 5.73526 5.79752 5.89031 5.90556 5.99464 6.02797 6.07361 6.13766 6.21909 6.30772 6.40804 6.54387 6.57243 6.77822 6.88279 7.20148 7.48368 7.53314 7.73975 7.90058 8.05859 8.49520 9.10131 9.66648 11.16336 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.053263 B = 0.004844 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.567826 B = 5779.343687 C = 5944.317385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.526 5.526 3 C 0.056 3.944 4 C -0.103 4.103 5 C 0.022 3.978 6 C -0.518 4.518 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.061 3.939 15 H 0.057 0.943 16 C -0.128 4.128 17 C -0.134 4.134 18 C -0.076 4.076 19 C -0.114 4.114 20 C -0.138 4.138 21 H 0.019 0.981 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.025 0.975 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.012 0.988 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.044 0.956 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 -17.174 -7.398 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.250 5.250 3 C -0.071 4.071 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.556 4.556 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 C -0.048 4.048 15 H 0.075 0.925 16 C -0.165 4.165 17 C -0.172 4.172 18 C -0.077 4.077 19 C -0.171 4.171 20 C -0.196 4.196 21 H 0.038 0.962 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.117 -17.223 -7.005 18.713 hybrid contribution -0.511 1.100 0.011 1.213 sum -2.628 -16.123 -6.994 17.770 Atomic orbital electron populations 1.22432 0.88271 1.00742 1.01140 1.62293 1.07285 1.14789 1.40640 1.22272 0.99614 0.86359 0.98840 1.21622 0.99934 0.98068 0.94488 1.19069 0.96203 0.89459 0.96844 1.21225 1.34569 0.97635 1.02167 0.92775 1.25024 0.95274 0.97499 0.96692 1.69961 1.38255 1.11362 1.34101 0.86666 0.78742 0.78492 0.84145 1.20233 1.21332 1.20296 1.23205 0.95929 0.93032 0.92590 0.92515 1.22946 0.95531 0.96120 1.01944 1.22957 0.96470 0.97783 1.00008 1.21878 0.94544 0.94870 0.96361 1.21428 1.03074 0.98739 0.93877 1.21810 0.98368 1.00762 0.98623 0.96239 0.91850 0.91020 0.95691 0.91349 0.92725 0.93591 0.96961 0.96662 0.93034 0.91869 0.89091 0.91356 0.90581 0.91838 0.93722 0.91961 0.92910 0.92729 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.62 60.07 0.52 0.83 16 2 N -0.53 -8.06 3.94 -233.90 -0.92 -8.98 16 3 C 0.06 1.02 4.89 -3.82 -0.02 1.00 16 4 C -0.10 -2.22 5.07 -26.73 -0.14 -2.35 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 6 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 7 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 9 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 10 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.06 0.80 2.62 -66.90 -0.18 0.63 16 15 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 16 C -0.13 -1.56 6.69 -25.83 -0.17 -1.74 16 17 C -0.13 -1.38 7.22 -25.83 -0.19 -1.56 16 18 C -0.08 -0.83 0.76 -153.69 -0.12 -0.95 16 19 C -0.11 -1.28 8.29 37.16 0.31 -0.97 16 20 C -0.14 -1.33 9.12 37.16 0.34 -0.99 16 21 H 0.02 0.28 8.06 -51.92 -0.42 -0.14 16 22 H 0.06 0.78 4.76 -51.93 -0.25 0.53 16 23 H 0.07 1.07 6.76 -51.93 -0.35 0.72 16 24 H 0.02 0.47 8.06 -51.93 -0.42 0.05 16 25 H 0.07 1.25 7.40 -51.93 -0.38 0.87 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.97 6.68 -51.93 -0.35 0.63 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.20 7.62 -51.93 -0.40 0.81 16 33 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 35 H 0.06 0.75 6.14 -51.93 -0.32 0.43 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 38 H 0.05 0.48 7.94 -51.93 -0.41 0.07 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.55 6.93 -51.93 -0.36 0.19 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -29.87 307.66 -8.13 -38.00 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -7.37 Total: -4.46 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -0.19 Total: -19.47 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.18 Total: -35.74 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.87 -8.13 -38.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703770033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.569 kcal (2) G-P(sol) polarization free energy of solvation -29.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds