Wall clock time and date at job start Mon Mar 30 2020 03:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00003 * 2 1 4 4 C 1.53007 * 109.47126 * 66.04068 * 3 2 1 5 5 C 1.52999 * 109.46949 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47001 * 180.02562 * 5 4 3 7 7 H 1.07996 * 119.99717 * 359.72437 * 6 5 4 8 8 C 1.37881 * 119.99729 * 180.02562 * 6 5 4 9 9 N 1.31508 * 119.99954 * 359.72418 * 8 6 5 10 10 Si 1.86803 * 119.99408 * 179.72778 * 8 6 5 11 11 H 1.48495 * 109.47522 * 59.99849 * 10 8 6 12 12 H 1.48501 * 109.46773 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46845 * 299.99274 * 10 8 6 14 14 C 1.46893 * 111.00336 * 236.04514 * 2 1 3 15 15 H 1.09003 * 112.85328 * 62.78003 * 14 2 1 16 16 C 1.53780 * 113.61599 * 193.98142 * 14 2 1 17 17 C 1.53958 * 87.01968 * 139.95320 * 16 14 2 18 18 C 1.53779 * 87.11160 * 334.63490 * 17 16 14 19 19 C 1.53001 * 113.62002 * 270.81751 * 18 17 16 20 20 C 1.53002 * 113.61305 * 139.90981 * 18 17 16 21 21 H 1.09008 * 109.47038 * 54.08497 * 1 2 3 22 22 H 1.09000 * 109.46996 * 174.08293 * 1 2 3 23 23 H 1.08997 * 109.47324 * 294.08476 * 1 2 3 24 24 H 1.09004 * 109.47039 * 306.04516 * 3 2 1 25 25 H 1.08997 * 109.47556 * 186.04581 * 3 2 1 26 26 H 1.09004 * 109.46795 * 60.00299 * 4 3 2 27 27 H 1.08993 * 109.47162 * 299.99920 * 4 3 2 28 28 H 1.09004 * 109.47081 * 60.00532 * 5 4 3 29 29 H 1.08997 * 109.47692 * 300.00488 * 5 4 3 30 30 H 0.97009 * 119.99513 * 180.02562 * 9 8 6 31 31 H 1.08996 * 113.61578 * 254.52833 * 16 14 2 32 32 H 1.09000 * 113.61168 * 25.43249 * 16 14 2 33 33 H 1.09007 * 113.66673 * 220.06937 * 17 16 14 34 34 H 1.08997 * 113.61456 * 89.20305 * 17 16 14 35 35 H 1.08992 * 109.47506 * 163.37350 * 19 18 17 36 36 H 1.09005 * 109.46447 * 283.37485 * 19 18 17 37 37 H 1.09000 * 109.47164 * 43.36714 * 19 18 17 38 38 H 1.08995 * 109.46946 * 322.50439 * 20 18 17 39 39 H 1.09000 * 109.47237 * 82.50644 * 20 18 17 40 40 H 1.09003 * 109.46905 * 202.50446 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6313 2.0575 1.3183 5 6 2.1802 3.4856 1.3185 6 6 1.8221 4.1612 2.6171 7 1 1.2555 3.6269 3.3654 8 6 2.2125 5.4634 2.8474 9 7 2.9020 6.1140 1.9359 10 14 1.7621 6.3032 4.4540 11 1 2.3484 5.5468 5.5894 12 1 2.2959 7.6889 4.4548 13 1 0.2843 6.3415 4.5951 14 6 1.9955 -0.7659 -1.1375 15 1 1.7183 -0.3377 -2.1008 16 6 3.4927 -1.0958 -1.0179 17 6 3.1511 -2.4822 -1.5938 18 6 1.7323 -2.2778 -1.0369 19 6 1.5600 -2.7755 0.3996 20 6 0.6288 -2.7715 -1.9746 21 1 -0.3633 0.6029 -0.8324 22 1 -0.3633 -1.0222 -0.1059 23 1 -0.3634 0.4194 0.9382 24 1 1.5611 1.9273 -0.8310 25 1 3.0797 1.3445 -0.1082 26 1 2.0657 1.5016 2.1492 27 1 0.5471 2.0845 1.4264 28 1 1.7462 4.0418 0.4875 29 1 3.2645 3.4583 1.2105 30 1 3.1770 7.0301 2.0981 31 1 4.1258 -0.4949 -1.6707 32 1 3.8522 -1.1268 0.0107 33 1 3.6933 -3.2994 -1.1180 34 1 3.1910 -2.5248 -2.6822 35 1 0.6540 -2.3459 0.8268 36 1 1.4820 -3.8628 0.4004 37 1 2.4214 -2.4726 0.9949 38 1 0.9065 -2.5577 -3.0067 39 1 0.4988 -3.8464 -1.8486 40 1 -0.3051 -2.2622 -1.7366 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703770033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:14 Heat of formation + Delta-G solvation = -17.118452 kcal Electronic energy + Delta-G solvation = -16015.200782 eV Core-core repulsion = 13636.033837 eV Total energy + Delta-G solvation = -2379.166945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.04914 -37.41403 -35.34123 -32.96062 -31.70621 -28.66837 -28.19863 -27.19663 -25.31915 -23.56349 -22.74719 -21.42148 -18.98244 -18.46929 -17.02678 -16.52187 -16.08668 -15.92667 -15.89511 -14.82202 -14.51828 -14.22520 -13.98822 -13.90360 -13.54072 -13.22924 -13.01769 -12.81798 -12.66364 -12.59531 -12.45011 -12.34436 -12.27801 -11.86231 -11.58537 -11.42369 -11.37782 -11.27867 -10.82226 -10.70174 -10.54777 -9.22676 -8.20039 -6.31392 1.39619 1.43220 1.51149 2.41031 3.05075 3.12841 3.58360 3.66960 3.94017 3.97223 4.18260 4.28575 4.41266 4.54210 4.60512 4.64067 4.72662 4.74018 4.85253 4.89351 4.93226 4.97488 5.01597 5.07467 5.09187 5.12049 5.22569 5.24875 5.31814 5.39301 5.51841 5.63426 5.67276 5.74251 5.85384 6.12919 6.26293 6.33235 6.85018 7.37786 8.91817 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.053263 B = 0.004844 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.567826 B = 5779.343687 C = 5944.317385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.528 5.528 3 C 0.069 3.931 4 C -0.086 4.086 5 C 0.026 3.974 6 C -0.544 4.544 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.267 1.267 14 C 0.051 3.949 15 H 0.055 0.945 16 C -0.134 4.134 17 C -0.122 4.122 18 C -0.070 4.070 19 C -0.113 4.113 20 C -0.136 4.136 21 H 0.017 0.983 22 H 0.086 0.914 23 H 0.061 0.939 24 H 0.017 0.983 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.048 0.952 28 H -0.013 1.013 29 H -0.010 1.010 30 H 0.264 0.736 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 -18.634 -7.105 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.252 5.252 3 C -0.059 4.059 4 C -0.124 4.124 5 C -0.011 4.011 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.191 1.191 14 C -0.058 4.058 15 H 0.072 0.928 16 C -0.171 4.171 17 C -0.159 4.159 18 C -0.070 4.070 19 C -0.170 4.170 20 C -0.193 4.193 21 H 0.035 0.965 22 H 0.104 0.896 23 H 0.079 0.921 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.006 0.994 29 H 0.009 0.991 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.841 -18.706 -6.717 20.077 hybrid contribution -0.269 1.543 -0.115 1.571 sum -3.110 -17.163 -6.832 18.733 Atomic orbital electron populations 1.22456 0.87468 1.02066 1.00461 1.62253 1.08044 1.12720 1.42150 1.21972 0.99402 0.87998 0.96504 1.21357 0.99616 0.95173 0.96290 1.18967 0.94587 0.92261 0.95324 1.21653 1.34946 0.98443 1.03103 0.92311 1.25999 0.94894 0.98241 1.00693 1.70098 1.39151 1.11837 1.36366 0.85486 0.78923 0.77307 0.79247 1.19134 1.20694 1.19140 1.23394 0.96639 0.94228 0.91505 0.92753 1.22959 0.94925 0.97829 1.01426 1.22925 0.95658 0.96561 1.00787 1.21865 0.95722 0.92699 0.96738 1.21411 1.01994 0.99907 0.93672 1.21793 0.97485 1.01582 0.98466 0.96462 0.89581 0.92071 0.96479 0.91810 0.93067 0.93309 0.99422 0.99111 0.92755 0.92020 0.90370 0.90263 0.89219 0.92630 0.91864 0.93377 0.92312 0.91284 0.92939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 8.62 127.69 1.10 1.74 16 2 N -0.53 -15.94 3.94 -893.93 -3.52 -19.46 16 3 C 0.07 2.55 4.89 86.31 0.42 2.98 16 4 C -0.09 -3.78 5.07 30.60 0.16 -3.63 16 5 C 0.03 1.45 4.97 29.85 0.15 1.59 16 6 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 7 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 9 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 10 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.05 1.28 2.62 45.44 0.12 1.39 16 15 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 16 C -0.13 -3.16 6.69 31.18 0.21 -2.95 16 17 C -0.12 -2.21 7.22 31.18 0.23 -1.98 16 18 C -0.07 -1.38 0.76 -51.65 -0.04 -1.41 16 19 C -0.11 -2.29 8.29 71.98 0.60 -1.70 16 20 C -0.14 -2.22 9.12 71.98 0.66 -1.57 16 21 H 0.02 0.47 8.06 -2.38 -0.02 0.45 16 22 H 0.09 1.96 4.76 -2.39 -0.01 1.95 16 23 H 0.06 1.80 6.76 -2.39 -0.02 1.78 16 24 H 0.02 0.65 8.06 -2.39 -0.02 0.63 16 25 H 0.06 2.40 7.40 -2.39 -0.02 2.38 16 26 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 2.09 6.68 -2.39 -0.02 2.07 16 28 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 2.05 7.62 -2.39 -0.02 2.04 16 33 H 0.08 1.30 8.10 -2.38 -0.02 1.28 16 34 H 0.09 1.41 7.96 -2.39 -0.02 1.39 16 35 H 0.05 1.21 6.14 -2.39 -0.01 1.20 16 36 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.05 1.11 7.32 -2.39 -0.02 1.09 16 38 H 0.06 0.90 7.94 -2.39 -0.02 0.88 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 0.89 6.93 -2.39 -0.02 0.88 16 Total: -1.00 -64.07 307.66 4.05 -60.03 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.97 Total: 7.07 kcal Atomic # 6 Polarization: -41.20 SS G_CDS: 4.29 Total: -36.91 kcal Atomic # 7 Polarization: -74.13 SS G_CDS: -3.24 Total: -77.37 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.07 4.05 -60.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703770033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.908 kcal (2) G-P(sol) polarization free energy of solvation -64.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds